Wall clock time and date at job start Tue Mar 31 2020 14:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.50666 * 2 1 4 4 C 1.53057 * 109.48537 * 120.04943 * 2 1 3 5 5 N 1.46956 * 109.36255 * 178.36634 * 4 2 1 6 6 C 1.46897 * 110.99768 * 176.81272 * 5 4 2 7 7 C 1.53004 * 109.47193 * 189.84660 * 6 5 4 8 8 C 1.52998 * 109.47351 * 179.97438 * 7 6 5 9 9 S 1.80996 * 109.47263 * 180.02562 * 8 7 6 10 10 C 1.76199 * 100.00375 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99570 * 359.97438 * 10 9 8 12 12 C 1.38788 * 120.00305 * 180.02562 * 10 9 8 13 13 N 1.31630 * 120.00333 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 120.00194 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46721 * 90.00393 * 14 12 10 16 16 H 1.48495 * 109.47399 * 210.00734 * 14 12 10 17 17 H 1.48501 * 109.47029 * 330.00948 * 14 12 10 18 18 C 1.46955 * 110.88380 * 300.68630 * 5 4 2 19 19 C 1.53045 * 109.36491 * 59.31675 * 18 5 4 20 20 N 1.46948 * 109.49092 * 239.94056 * 2 1 3 21 21 C 1.46907 * 110.99936 * 56.84761 * 20 2 1 22 22 C 1.52996 * 109.47217 * 200.06510 * 21 20 2 23 23 F 1.39902 * 109.47303 * 53.95161 * 22 21 20 24 24 F 1.39899 * 109.47342 * 173.95110 * 22 21 20 25 25 F 1.39897 * 109.47022 * 293.95499 * 22 21 20 26 26 H 1.08997 * 109.47367 * 288.92569 * 1 2 3 27 27 H 1.09004 * 109.46893 * 48.91975 * 1 2 3 28 28 H 1.09000 * 109.47238 * 168.92157 * 1 2 3 29 29 H 1.09005 * 109.48769 * 58.40283 * 4 2 1 30 30 H 1.09001 * 109.49179 * 298.33676 * 4 2 1 31 31 H 1.08998 * 109.47636 * 309.84555 * 6 5 4 32 32 H 1.09001 * 109.47373 * 69.85139 * 6 5 4 33 33 H 1.09004 * 109.47119 * 300.00639 * 7 6 5 34 34 H 1.09001 * 109.46570 * 59.99987 * 7 6 5 35 35 H 1.09003 * 109.47063 * 300.00438 * 8 7 6 36 36 H 1.08997 * 109.46769 * 60.00352 * 8 7 6 37 37 H 0.97002 * 120.00287 * 179.97438 * 13 12 10 38 38 H 1.09008 * 109.48380 * 299.35329 * 18 5 4 39 39 H 1.08997 * 109.49279 * 179.28884 * 18 5 4 40 40 H 1.08997 * 109.49098 * 61.57293 * 19 18 5 41 41 H 1.09001 * 109.48745 * 181.63430 * 19 18 5 42 42 H 1.08994 * 109.46714 * 320.06778 * 21 20 2 43 43 H 1.08998 * 109.46956 * 80.06153 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7225 1.2490 5 7 3.5096 -0.7553 1.2266 6 6 4.0410 -1.3751 2.4478 7 6 5.5565 -1.1730 2.5045 8 6 6.1099 -1.8180 3.7767 9 16 7.9027 -1.5782 3.8441 10 6 8.2639 -2.3955 5.3627 11 1 7.4676 -2.8479 5.9351 12 6 9.5715 -2.4570 5.8239 13 7 9.8413 -3.0671 6.9586 14 14 10.9487 -1.6738 4.8342 15 1 11.1264 -0.2633 5.2634 16 1 12.2102 -2.4233 5.0621 17 1 10.6042 -1.7121 3.3902 18 6 4.0000 -1.4491 0.0275 19 6 3.4894 -0.7265 -1.2213 20 7 2.0204 -0.6939 -1.1990 21 6 1.4890 -0.0740 -2.4202 22 6 1.5863 -1.0670 -3.5801 23 9 0.9590 -2.2652 -3.2221 24 9 0.9565 -0.5299 -4.7080 25 9 2.9322 -1.3141 -3.8708 26 1 -0.3634 0.3333 0.9721 27 1 -0.3633 0.6753 -0.7747 28 1 -0.3634 -1.0085 -0.1975 29 1 1.6543 -1.7418 1.2629 30 1 1.7021 -0.1928 2.1395 31 1 3.5799 -0.9124 3.3204 32 1 3.8168 -2.4418 2.4411 33 1 6.0177 -1.6356 1.6319 34 1 5.7808 -0.1063 2.5112 35 1 5.6487 -1.3549 4.6491 36 1 5.8856 -2.8846 3.7704 37 1 10.7553 -3.1103 7.2807 38 1 3.6359 -2.4766 0.0276 39 1 5.0899 -1.4491 0.0276 40 1 3.8757 0.2926 -1.2352 41 1 3.8279 -1.2562 -2.1118 42 1 0.4459 0.2009 -2.2638 43 1 2.0684 0.8185 -2.6564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128205098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:03 Heat of formation + Delta-G solvation = -153.716255 kcal Electronic energy + Delta-G solvation = -25904.607551 eV Core-core repulsion = 21695.580311 eV Total energy + Delta-G solvation = -4209.027240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.38762 -47.96622 -47.79599 -39.97629 -36.72392 -33.27168 -32.75174 -32.43454 -30.23510 -27.55506 -26.69974 -25.65180 -24.13939 -23.19698 -22.48404 -20.64448 -20.13434 -18.84538 -18.73767 -17.82114 -17.48115 -16.42498 -15.96228 -15.57074 -15.16817 -15.02022 -14.90687 -14.85234 -14.58019 -14.54101 -14.20741 -14.04747 -13.99131 -13.91448 -13.84216 -13.53086 -12.85967 -12.58544 -12.50745 -12.33722 -12.23201 -12.05860 -11.84121 -11.59923 -11.41739 -11.21258 -11.05276 -10.99618 -10.89177 -10.36677 -10.11100 -9.77127 -9.01877 -9.00375 -8.56167 -8.45892 -6.94006 -6.28205 -4.00432 2.35068 3.00108 3.06339 3.30251 3.45503 3.47942 3.52895 3.66215 3.78225 4.05672 4.31820 4.36618 4.51461 4.57967 4.70019 4.79921 4.85156 4.97400 5.03812 5.10382 5.11030 5.20472 5.22889 5.31481 5.42859 5.48757 5.57701 5.61036 5.67416 5.70323 5.79968 5.86435 5.95180 6.22426 6.29799 6.43557 6.47231 6.62944 6.92626 6.95538 7.95576 8.44439 9.17757 10.81291 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.002196 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.222278 B =12746.148727 C =13445.411258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.087 3.913 3 H 0.058 0.942 4 C 0.063 3.937 5 N -0.541 5.541 6 C 0.061 3.939 7 C -0.097 4.097 8 C -0.082 4.082 9 S -0.215 6.215 10 C -0.502 4.502 11 H 0.088 0.912 12 C 0.091 3.909 13 N -0.882 5.882 14 Si 0.862 3.138 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.238 1.238 18 C 0.054 3.946 19 C 0.040 3.960 20 N -0.530 5.530 21 C 0.003 3.997 22 C 0.458 3.542 23 F -0.173 7.173 24 F -0.186 7.186 25 F -0.183 7.183 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.270 0.730 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 7.401 -20.536 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 H 0.076 0.924 4 C -0.066 4.066 5 N -0.265 5.265 6 C -0.068 4.068 7 C -0.136 4.136 8 C -0.231 4.231 9 S 0.012 5.988 10 C -0.649 4.649 11 H 0.106 0.894 12 C -0.117 4.117 13 N -0.519 5.519 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.162 1.162 18 C -0.074 4.074 19 C -0.087 4.087 20 N -0.256 5.256 21 C -0.127 4.127 22 C 0.403 3.597 23 F -0.154 7.154 24 F -0.168 7.168 25 F -0.164 7.164 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.140 0.860 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.474 7.836 -21.120 30.441 hybrid contribution -0.012 -0.589 0.510 0.779 sum -20.486 7.247 -20.610 29.949 Atomic orbital electron populations 1.21956 0.93768 1.02914 1.02400 1.21715 0.95164 0.96437 0.88740 0.92422 1.22180 0.87885 0.99766 0.96755 1.62165 1.07597 1.54141 1.02620 1.22148 0.96083 0.97021 0.91521 1.21338 0.92962 1.01960 0.97303 1.23009 0.98261 1.02432 0.99390 1.84152 1.04007 1.76461 1.34147 1.22123 0.97630 1.40458 1.04715 0.89439 1.24801 0.98178 0.94169 0.94569 1.69938 1.20729 1.41555 1.19698 0.86663 0.81739 0.79982 0.82918 1.19377 1.20135 1.16164 1.22208 1.00809 0.95810 0.88538 1.22615 0.85482 1.00954 0.99668 1.62047 1.09929 1.53106 1.00477 1.23295 1.05663 0.94312 0.89445 1.20528 0.73520 0.82034 0.83641 1.93206 1.82209 1.48383 1.91608 1.93184 1.82562 1.86034 1.55012 1.93123 1.34186 1.94986 1.94109 0.91197 0.92438 0.91188 0.93745 0.89878 0.90598 0.94572 0.91567 0.90719 0.91432 0.91582 0.91986 0.93765 0.89130 0.93109 0.88754 0.85993 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.60 37.16 0.32 -0.53 16 2 C 0.09 0.66 2.56 -67.65 -0.17 0.48 16 3 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 4 C 0.06 0.57 4.87 -3.76 -0.02 0.55 16 5 N -0.54 -5.96 4.71 -234.46 -1.10 -7.06 16 6 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 7 C -0.10 -1.46 5.15 -26.73 -0.14 -1.59 16 8 C -0.08 -1.56 5.67 37.16 0.21 -1.35 16 9 S -0.22 -5.24 19.41 -107.50 -2.09 -7.33 16 10 C -0.50 -14.58 10.04 30.94 0.31 -14.27 16 11 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 12 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 13 N -0.88 -26.84 13.97 55.49 0.78 -26.06 16 14 Si 0.86 21.60 27.74 -169.99 -4.72 16.88 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 18 C 0.05 0.58 5.41 -3.77 -0.02 0.56 16 19 C 0.04 0.37 5.34 -3.77 -0.02 0.35 16 20 N -0.53 -4.34 4.27 -226.50 -0.97 -5.31 16 21 C 0.00 0.02 4.96 -3.82 -0.02 0.00 16 22 C 0.46 3.71 3.27 37.16 0.12 3.83 16 23 F -0.17 -1.69 17.13 2.25 0.04 -1.65 16 24 F -0.19 -1.53 17.32 2.25 0.04 -1.49 16 25 F -0.18 -1.69 14.68 2.25 0.03 -1.66 16 26 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 27 H 0.06 0.25 6.59 -51.93 -0.34 -0.10 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.08 0.90 8.03 -51.93 -0.42 0.49 16 32 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 1.00 6.49 -51.93 -0.34 0.66 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.29 8.14 -51.91 -0.42 0.87 16 36 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 37 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.09 1.01 6.33 -51.93 -0.33 0.68 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.86 5.56 -51.93 -0.29 0.57 16 42 H 0.12 0.57 5.61 -51.93 -0.29 0.28 16 43 H 0.08 0.44 7.99 -51.93 -0.41 0.02 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -31.13 358.87 -8.76 -39.89 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.64 Total: -2.96 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 0.46 Total: -8.66 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -1.30 Total: -38.43 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.80 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.72 Total: 16.88 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.09 Total: -7.33 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.13 -8.76 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128205098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.824 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds