Wall clock time and date at job start Tue Mar 31 2020 14:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.50666 * 2 1 4 4 C 1.53057 * 109.48537 * 120.04943 * 2 1 3 5 5 N 1.46956 * 109.36255 * 178.36634 * 4 2 1 6 6 C 1.46897 * 110.99768 * 176.81272 * 5 4 2 7 7 C 1.53004 * 109.47193 * 189.84660 * 6 5 4 8 8 C 1.52998 * 109.47351 * 179.97438 * 7 6 5 9 9 S 1.80996 * 109.47263 * 180.02562 * 8 7 6 10 10 C 1.76199 * 100.00375 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99570 * 359.97438 * 10 9 8 12 12 C 1.38788 * 120.00305 * 180.02562 * 10 9 8 13 13 N 1.31630 * 120.00333 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 120.00194 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46721 * 90.00393 * 14 12 10 16 16 H 1.48495 * 109.47399 * 210.00734 * 14 12 10 17 17 H 1.48501 * 109.47029 * 330.00948 * 14 12 10 18 18 C 1.46955 * 110.88380 * 300.68630 * 5 4 2 19 19 C 1.53045 * 109.36491 * 59.31675 * 18 5 4 20 20 N 1.46948 * 109.49092 * 239.94056 * 2 1 3 21 21 C 1.46907 * 110.99936 * 56.84761 * 20 2 1 22 22 C 1.52996 * 109.47217 * 200.06510 * 21 20 2 23 23 F 1.39902 * 109.47303 * 53.95161 * 22 21 20 24 24 F 1.39899 * 109.47342 * 173.95110 * 22 21 20 25 25 F 1.39897 * 109.47022 * 293.95499 * 22 21 20 26 26 H 1.08997 * 109.47367 * 288.92569 * 1 2 3 27 27 H 1.09004 * 109.46893 * 48.91975 * 1 2 3 28 28 H 1.09000 * 109.47238 * 168.92157 * 1 2 3 29 29 H 1.09005 * 109.48769 * 58.40283 * 4 2 1 30 30 H 1.09001 * 109.49179 * 298.33676 * 4 2 1 31 31 H 1.08998 * 109.47636 * 309.84555 * 6 5 4 32 32 H 1.09001 * 109.47373 * 69.85139 * 6 5 4 33 33 H 1.09004 * 109.47119 * 300.00639 * 7 6 5 34 34 H 1.09001 * 109.46570 * 59.99987 * 7 6 5 35 35 H 1.09003 * 109.47063 * 300.00438 * 8 7 6 36 36 H 1.08997 * 109.46769 * 60.00352 * 8 7 6 37 37 H 0.97002 * 120.00287 * 179.97438 * 13 12 10 38 38 H 1.09008 * 109.48380 * 299.35329 * 18 5 4 39 39 H 1.08997 * 109.49279 * 179.28884 * 18 5 4 40 40 H 1.08997 * 109.49098 * 61.57293 * 19 18 5 41 41 H 1.09001 * 109.48745 * 181.63430 * 19 18 5 42 42 H 1.08994 * 109.46714 * 320.06778 * 21 20 2 43 43 H 1.08998 * 109.46956 * 80.06153 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7225 1.2490 5 7 3.5096 -0.7553 1.2266 6 6 4.0410 -1.3751 2.4478 7 6 5.5565 -1.1730 2.5045 8 6 6.1099 -1.8180 3.7767 9 16 7.9027 -1.5782 3.8441 10 6 8.2639 -2.3955 5.3627 11 1 7.4676 -2.8479 5.9351 12 6 9.5715 -2.4570 5.8239 13 7 9.8413 -3.0671 6.9586 14 14 10.9487 -1.6738 4.8342 15 1 11.1264 -0.2633 5.2634 16 1 12.2102 -2.4233 5.0621 17 1 10.6042 -1.7121 3.3902 18 6 4.0000 -1.4491 0.0275 19 6 3.4894 -0.7265 -1.2213 20 7 2.0204 -0.6939 -1.1990 21 6 1.4890 -0.0740 -2.4202 22 6 1.5863 -1.0670 -3.5801 23 9 0.9590 -2.2652 -3.2221 24 9 0.9565 -0.5299 -4.7080 25 9 2.9322 -1.3141 -3.8708 26 1 -0.3634 0.3333 0.9721 27 1 -0.3633 0.6753 -0.7747 28 1 -0.3634 -1.0085 -0.1975 29 1 1.6543 -1.7418 1.2629 30 1 1.7021 -0.1928 2.1395 31 1 3.5799 -0.9124 3.3204 32 1 3.8168 -2.4418 2.4411 33 1 6.0177 -1.6356 1.6319 34 1 5.7808 -0.1063 2.5112 35 1 5.6487 -1.3549 4.6491 36 1 5.8856 -2.8846 3.7704 37 1 10.7553 -3.1103 7.2807 38 1 3.6359 -2.4766 0.0276 39 1 5.0899 -1.4491 0.0276 40 1 3.8757 0.2926 -1.2352 41 1 3.8279 -1.2562 -2.1118 42 1 0.4459 0.2009 -2.2638 43 1 2.0684 0.8185 -2.6564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128205098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:02 Heat of formation + Delta-G solvation = -173.975460 kcal Electronic energy + Delta-G solvation = -25905.486056 eV Core-core repulsion = 21695.580311 eV Total energy + Delta-G solvation = -4209.905746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.04257 -48.61770 -48.48042 -40.68412 -37.57615 -34.69058 -34.27915 -33.48947 -30.99426 -28.16749 -28.07550 -27.49784 -25.04753 -23.88909 -23.34039 -21.70254 -20.81983 -19.62694 -19.49589 -19.37185 -18.44323 -17.24420 -17.07534 -16.76864 -16.43155 -16.17636 -15.93252 -15.67795 -15.47540 -15.21352 -15.07305 -14.95789 -14.89234 -14.85497 -14.69037 -14.58053 -14.16329 -13.74212 -13.54669 -13.41767 -13.03590 -13.00273 -12.84626 -12.81164 -12.69786 -12.54331 -12.22257 -12.02284 -11.91019 -11.77214 -11.53513 -11.31959 -11.15965 -10.55870 -9.63327 -9.32928 -8.98940 -8.52076 -6.23250 1.12704 1.32083 1.47856 1.74441 1.76160 2.24774 2.45938 2.68210 2.84798 2.85963 2.92840 3.09017 3.44055 3.73973 3.86810 3.93998 4.02414 4.16720 4.21069 4.25850 4.31008 4.33993 4.38634 4.48389 4.51658 4.67001 4.70808 4.79836 4.80506 4.85827 4.92414 5.01064 5.05158 5.16591 5.28374 5.34920 5.69045 5.69746 5.80957 6.04819 6.09919 6.10850 6.92055 8.61024 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.002196 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.222278 B =12746.148727 C =13445.411258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 H 0.060 0.940 4 C 0.061 3.939 5 N -0.544 5.544 6 C 0.070 3.930 7 C -0.083 4.083 8 C -0.069 4.069 9 S -0.220 6.220 10 C -0.522 4.522 11 H 0.050 0.950 12 C 0.036 3.964 13 N -0.923 5.923 14 Si 0.926 3.074 15 H -0.261 1.261 16 H -0.264 1.264 17 H -0.229 1.229 18 C 0.054 3.946 19 C 0.046 3.954 20 N -0.541 5.541 21 C 0.008 3.992 22 C 0.455 3.545 23 F -0.185 7.185 24 F -0.187 7.187 25 F -0.191 7.191 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.277 0.723 38 H 0.033 0.967 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.142 0.858 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.243 9.060 -22.240 32.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 H 0.078 0.922 4 C -0.067 4.067 5 N -0.268 5.268 6 C -0.059 4.059 7 C -0.122 4.122 8 C -0.218 4.218 9 S 0.008 5.992 10 C -0.669 4.669 11 H 0.068 0.932 12 C -0.168 4.168 13 N -0.561 5.561 14 Si 0.747 3.253 15 H -0.186 1.186 16 H -0.188 1.188 17 H -0.152 1.152 18 C -0.074 4.074 19 C -0.081 4.081 20 N -0.267 5.267 21 C -0.121 4.121 22 C 0.400 3.600 23 F -0.166 7.166 24 F -0.168 7.168 25 F -0.173 7.173 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.160 0.840 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.406 9.495 -22.828 32.703 hybrid contribution 0.138 -1.152 1.048 1.564 sum -21.268 8.342 -21.780 31.565 Atomic orbital electron populations 1.21930 0.92054 1.02933 1.03606 1.21719 0.96402 0.95955 0.87607 0.92249 1.22283 0.86401 0.99768 0.98278 1.62157 1.08975 1.53716 1.01956 1.21970 0.94019 0.97166 0.92759 1.21207 0.94814 1.01276 0.94912 1.23070 0.94304 1.02757 1.01657 1.83845 1.08716 1.75670 1.31006 1.22346 0.97087 1.40781 1.06728 0.93169 1.25797 1.00796 0.94593 0.95639 1.70040 1.21790 1.42863 1.21413 0.85700 0.78605 0.79293 0.81660 1.18554 1.18806 1.15216 1.22194 1.00412 0.95523 0.89263 1.22500 0.86345 1.00695 0.98592 1.61990 1.09223 1.54005 1.01478 1.23368 1.07076 0.93875 0.87808 1.20842 0.72965 0.81964 0.84198 1.93182 1.82406 1.49341 1.91714 1.93181 1.82519 1.85929 1.55208 1.93106 1.34887 1.95074 1.94231 0.90311 0.90713 0.91985 0.94543 0.88856 0.89821 0.94823 0.91448 0.90793 0.91465 0.91910 0.91410 0.94835 0.89891 0.92917 0.88949 0.83979 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.60 71.98 0.62 -0.60 16 2 C 0.09 1.14 2.56 44.93 0.12 1.26 16 3 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.06 0.99 4.87 86.31 0.42 1.41 16 5 N -0.54 -11.09 4.71 -895.70 -4.22 -15.31 16 6 C 0.07 1.63 4.96 86.31 0.43 2.06 16 7 C -0.08 -2.39 5.15 30.59 0.16 -2.24 16 8 C -0.07 -2.60 5.67 71.98 0.41 -2.19 16 9 S -0.22 -10.62 19.41 -56.49 -1.10 -11.72 16 10 C -0.52 -30.96 10.04 67.95 0.68 -30.28 16 11 H 0.05 3.24 8.03 -2.91 -0.02 3.21 16 12 C 0.04 2.15 5.50 84.85 0.47 2.61 16 13 N -0.92 -57.16 13.97 21.65 0.30 -56.86 16 14 Si 0.93 44.33 27.74 68.60 1.90 46.24 16 15 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.23 -10.54 6.74 99.48 0.67 -9.87 16 18 C 0.05 1.10 5.41 86.31 0.47 1.57 16 19 C 0.05 0.77 5.34 86.31 0.46 1.24 16 20 N -0.54 -7.77 4.27 -870.50 -3.72 -11.49 16 21 C 0.01 0.08 4.96 86.30 0.43 0.51 16 22 C 0.46 6.68 3.27 71.98 0.24 6.92 16 23 F -0.18 -3.42 17.13 44.97 0.77 -2.65 16 24 F -0.19 -2.76 17.32 44.97 0.78 -1.98 16 25 F -0.19 -3.34 14.68 44.97 0.66 -2.68 16 26 H 0.08 0.53 8.10 -2.39 -0.02 0.51 16 27 H 0.07 0.37 6.59 -2.39 -0.02 0.36 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.09 1.32 8.07 -2.39 -0.02 1.30 16 31 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 32 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 33 H 0.07 1.94 6.49 -2.38 -0.02 1.93 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 37 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.03 0.74 8.14 -2.38 -0.02 0.73 16 39 H 0.08 1.77 6.33 -2.39 -0.02 1.76 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.58 5.56 -2.39 -0.01 1.57 16 42 H 0.14 0.87 5.61 -2.39 -0.01 0.86 16 43 H 0.10 0.75 7.99 -2.39 -0.02 0.73 16 Total: -1.00 -67.45 358.87 1.23 -66.22 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.97 Total: 7.96 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.89 Total: -17.73 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -7.64 Total: -83.66 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 2.21 Total: -7.31 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.24 kcal Atomic # 16 Polarization: -10.62 SS G_CDS: -1.10 Total: -11.72 kcal Total: -67.45 1.23 -66.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128205098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.760 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds