Wall clock time and date at job start Tue Mar 31 2020 15:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99947 * 2 1 4 4 C 1.53001 * 109.46988 * 180.02562 * 3 2 1 5 5 O 1.42893 * 109.47137 * 64.99869 * 4 3 2 6 6 C 1.36033 * 116.99890 * 179.97438 * 5 4 3 7 7 C 1.38648 * 119.99609 * 0.02562 * 6 5 4 8 8 C 1.38134 * 120.03975 * 180.02562 * 7 6 5 9 9 C 1.38832 * 120.02241 * 359.97438 * 8 7 6 10 10 N 1.40151 * 120.00164 * 179.97438 * 9 8 7 11 11 C 1.34774 * 119.99686 * 146.83422 * 10 9 8 12 12 O 1.21587 * 120.00383 * 354.68226 * 11 10 9 13 13 N 1.34774 * 120.00073 * 174.68606 * 11 10 9 14 14 C 1.46499 * 120.00594 * 179.97438 * 13 11 10 15 15 H 1.09010 * 109.46719 * 35.00227 * 14 13 11 16 16 C 1.52998 * 109.47427 * 275.00331 * 14 13 11 17 17 C 1.50703 * 109.47410 * 154.99456 * 14 13 11 18 18 H 1.08005 * 119.99823 * 0.02562 * 17 14 13 19 19 C 1.37873 * 120.00077 * 180.02562 * 17 14 13 20 20 N 1.31514 * 120.00238 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 119.99981 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47308 * 90.00248 * 21 19 17 23 23 H 1.48506 * 109.47353 * 210.00412 * 21 19 17 24 24 H 1.48507 * 109.47200 * 329.99834 * 21 19 17 25 25 C 1.38815 * 119.99199 * 0.25224 * 9 8 7 26 26 C 1.38288 * 119.95969 * 359.52135 * 25 9 8 27 27 F 1.35100 * 120.01351 * 180.22389 * 26 25 9 28 28 H 1.09004 * 109.46990 * 299.99994 * 1 2 3 29 29 H 1.08997 * 109.47403 * 59.99633 * 1 2 3 30 30 H 1.09000 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46751 * 60.00824 * 3 2 1 32 32 H 1.08991 * 109.47423 * 300.00212 * 3 2 1 33 33 H 1.09007 * 109.47186 * 304.99752 * 4 3 2 34 34 H 1.09005 * 109.47204 * 185.00356 * 4 3 2 35 35 H 1.08003 * 119.97870 * 359.97438 * 7 6 5 36 36 H 1.07994 * 119.98646 * 179.97438 * 8 7 6 37 37 H 0.96993 * 119.99973 * 326.83099 * 10 9 8 38 38 H 0.97008 * 119.99720 * 359.97438 * 13 11 10 39 39 H 1.09002 * 109.47155 * 179.97438 * 16 14 13 40 40 H 1.08997 * 109.46516 * 299.99484 * 16 14 13 41 41 H 1.08990 * 109.47001 * 59.99520 * 16 14 13 42 42 H 0.96994 * 120.00435 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.02319 * 179.72245 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3032 0.3986 -1.3842 7 6 6.1822 0.7950 -0.3879 8 6 7.5415 0.6121 -0.5520 9 6 8.0287 0.0305 -1.7147 10 7 9.4080 -0.1544 -1.8810 11 6 9.8671 -1.2185 -2.5690 12 8 9.0919 -2.0687 -2.9623 13 7 11.1854 -1.3402 -2.8211 14 6 11.6846 -2.4971 -3.5686 15 1 10.9539 -2.7837 -4.3250 16 6 11.9097 -3.6665 -2.6080 17 6 12.9864 -2.1391 -4.2380 18 1 13.4008 -1.1489 -4.1183 19 6 13.6485 -3.0756 -5.0033 20 7 13.1437 -4.2811 -5.1495 21 14 15.2625 -2.6320 -5.8325 22 1 16.3907 -2.9451 -4.9192 23 1 15.4074 -3.4162 -7.0852 24 1 15.2724 -1.1818 -6.1525 25 6 7.1501 -0.3625 -2.7149 26 6 5.7890 -0.1834 -2.5481 27 9 4.9326 -0.5696 -3.5190 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1766 0.0890 35 1 5.8039 1.2479 0.5167 36 1 8.2254 0.9215 0.2244 37 1 10.0321 0.4834 -1.5009 38 1 11.8038 -0.6618 -2.5076 39 1 12.2806 -4.5274 -3.1642 40 1 12.6403 -3.3798 -1.8517 41 1 10.9681 -3.9254 -2.1239 42 1 13.6097 -4.9401 -5.6875 43 1 7.5289 -0.8108 -3.6215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158329799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:23 Heat of formation + Delta-G solvation = -150.411221 kcal Electronic energy + Delta-G solvation = -26881.973100 eV Core-core repulsion = 22648.732741 eV Total energy + Delta-G solvation = -4233.240359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.87068 -41.68708 -40.73552 -39.06208 -38.28674 -36.74833 -35.37925 -34.27331 -31.99449 -31.61428 -30.88075 -29.04624 -27.32938 -27.25138 -25.09113 -23.97092 -23.29684 -22.49890 -21.55174 -19.92120 -19.55412 -18.97071 -18.06198 -17.84558 -17.52919 -17.17200 -16.89645 -16.63238 -16.54610 -16.22722 -16.08758 -15.80489 -15.70255 -15.48451 -15.12901 -14.54386 -14.39609 -14.03892 -13.86069 -13.57307 -13.52551 -13.13333 -12.99058 -12.88443 -12.77772 -12.70194 -12.43281 -12.27100 -12.20440 -12.12901 -11.89661 -11.24575 -11.09887 -10.88299 -10.65900 -10.60238 -9.93332 -9.80604 -8.72802 -8.16683 -6.34158 0.08322 0.17481 1.46029 1.47321 1.57336 1.70741 2.08417 2.12456 2.42579 2.64066 2.82943 3.13857 3.16844 3.46058 3.70185 3.92268 4.07570 4.12227 4.15385 4.36392 4.37952 4.48737 4.52524 4.55998 4.61560 4.74286 4.76973 4.86573 4.92675 4.94802 5.08145 5.09555 5.14380 5.33742 5.41254 5.59838 5.65994 5.76067 5.85520 6.09860 6.19442 6.25873 6.36175 6.73769 7.23764 7.34701 7.67102 8.89851 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032862 B = 0.002062 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.849784 B =13577.997648 C =13863.359934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.057 3.943 4 C 0.047 3.953 5 O -0.327 6.327 6 C 0.076 3.924 7 C -0.145 4.145 8 C -0.098 4.098 9 C 0.154 3.846 10 N -0.670 5.670 11 C 0.690 3.310 12 O -0.628 6.628 13 N -0.711 5.711 14 C 0.287 3.713 15 H -0.003 1.003 16 C -0.134 4.134 17 C -0.544 4.544 18 H 0.076 0.924 19 C 0.012 3.988 20 N -0.918 5.918 21 Si 0.975 3.025 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.264 1.264 25 C -0.143 4.143 26 C 0.056 3.944 27 F -0.151 7.151 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.427 0.573 38 H 0.406 0.594 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.010 0.990 42 H 0.265 0.735 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.634 18.073 16.606 30.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.019 4.019 4 C -0.027 4.027 5 O -0.241 6.241 6 C 0.030 3.970 7 C -0.164 4.164 8 C -0.118 4.118 9 C 0.059 3.941 10 N -0.320 5.320 11 C 0.391 3.609 12 O -0.509 6.509 13 N -0.364 5.364 14 C 0.183 3.817 15 H 0.015 0.985 16 C -0.193 4.193 17 C -0.583 4.583 18 H 0.094 0.906 19 C -0.188 4.188 20 N -0.556 5.556 21 Si 0.800 3.200 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.188 1.188 25 C -0.165 4.165 26 C 0.036 3.964 27 F -0.130 7.130 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.203 0.797 36 H 0.197 0.803 37 H 0.267 0.733 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.274 16.884 15.954 29.556 hybrid contribution 0.902 0.103 -0.898 1.277 sum -17.372 16.987 15.056 28.583 Atomic orbital electron populations 1.22903 0.79437 1.03577 1.01076 1.87940 1.21595 1.28911 1.95674 1.22806 0.91040 0.85144 1.02934 1.23324 0.94516 0.99812 0.85007 1.86185 1.18627 1.77821 1.41505 1.18959 0.84477 0.99605 0.93999 1.21305 0.92120 1.03597 0.99409 1.21119 0.95946 0.99989 0.94760 1.17319 0.82402 1.00524 0.93902 1.42396 1.05461 1.26669 1.57486 1.16300 0.83414 0.81926 0.79296 1.90894 1.56881 1.44226 1.58851 1.45413 1.04817 1.27644 1.58477 1.18272 0.92969 0.81841 0.88589 0.98484 1.21919 0.97432 1.01311 0.98656 1.21520 1.06097 0.99392 1.31247 0.90551 1.25824 1.01598 0.94634 0.96705 1.70062 1.40534 1.05129 1.39896 0.85298 0.78732 0.78452 0.77539 1.19522 1.21484 1.18772 1.20891 0.90979 1.03539 1.01081 1.17010 0.86825 1.05455 0.87101 1.91429 1.69920 1.89623 1.62004 0.91989 0.93574 0.89445 0.87563 0.92259 0.90000 0.86830 0.79742 0.80308 0.73309 0.75869 0.91500 0.93793 0.97106 0.92565 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.11 10.67 -144.34 -1.54 -9.65 16 3 C 0.06 0.70 6.32 71.98 0.45 1.15 16 4 C 0.05 0.62 5.12 71.98 0.37 0.99 16 5 O -0.33 -8.05 9.97 -89.28 -0.89 -8.94 16 6 C 0.08 1.97 6.69 22.53 0.15 2.12 16 7 C -0.15 -2.49 9.03 22.34 0.20 -2.29 16 8 C -0.10 -1.77 9.96 22.39 0.22 -1.55 16 9 C 0.15 4.35 6.28 38.09 0.24 4.59 16 10 N -0.67 -18.89 5.36 -317.09 -1.70 -20.59 16 11 C 0.69 27.99 8.27 179.06 1.48 29.47 16 12 O -0.63 -32.09 13.70 -3.99 -0.05 -32.14 16 13 N -0.71 -28.96 5.07 -461.41 -2.34 -31.30 16 14 C 0.29 14.92 2.56 44.25 0.11 15.03 16 15 H 0.00 -0.17 7.58 -2.38 -0.02 -0.19 16 16 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 17 C -0.54 -28.49 8.73 25.60 0.22 -28.27 16 18 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 19 C 0.01 0.67 5.30 84.65 0.45 1.11 16 20 N -0.92 -52.90 11.32 21.45 0.24 -52.66 16 21 Si 0.98 41.78 29.54 68.60 2.03 43.80 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C -0.14 -5.08 8.63 22.42 0.19 -4.89 16 26 C 0.06 1.90 7.31 22.44 0.16 2.06 16 27 F -0.15 -5.72 17.11 44.97 0.77 -4.95 16 28 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.93 7.66 -2.38 -0.02 0.91 16 34 H 0.11 0.67 7.66 -2.38 -0.02 0.66 16 35 H 0.19 1.43 6.29 -2.91 -0.02 1.41 16 36 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.43 7.91 8.83 -92.71 -0.82 7.09 16 38 H 0.41 13.23 8.56 -92.70 -0.79 12.44 16 39 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 40 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.12 5.07 6.42 -2.91 -0.02 5.05 16 Total: -1.00 -80.10 368.68 2.14 -77.95 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.55 Total: 23.55 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.18 Total: 14.92 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -3.80 Total: -104.55 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -2.48 Total: -50.73 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.77 Total: -4.95 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -80.10 2.14 -77.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158329799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.456 kcal (2) G-P(sol) polarization free energy of solvation -80.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds