Wall clock time and date at job start Tue Mar 31 2020 14:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47113 * 2 1 4 4 C 1.50705 * 109.47033 * 119.99860 * 2 1 3 5 5 H 1.07996 * 119.99861 * 119.99880 * 4 2 1 6 6 C 1.37872 * 120.00182 * 300.00416 * 4 2 1 7 7 N 1.31507 * 120.00147 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00041 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46741 * 90.00211 * 8 6 4 10 10 H 1.48493 * 109.47319 * 209.99989 * 8 6 4 11 11 H 1.48503 * 109.46905 * 330.00520 * 8 6 4 12 12 N 1.46498 * 109.47343 * 239.99827 * 2 1 3 13 13 C 1.46497 * 120.00449 * 300.00393 * 12 2 1 14 14 C 1.34776 * 119.99750 * 120.00137 * 12 2 1 15 15 O 1.21511 * 120.00468 * 2.06951 * 14 12 2 16 16 C 1.48186 * 119.99994 * 182.07128 * 14 12 2 17 17 C 1.39095 * 119.69716 * 183.60288 * 16 14 12 18 18 C 1.39260 * 118.98026 * 179.70943 * 17 16 14 19 19 O 1.35732 * 120.81884 * 180.29907 * 18 17 16 20 20 C 1.35895 * 117.99969 * 355.41449 * 19 18 17 21 21 C 1.38754 * 120.05633 * 255.15979 * 20 19 18 22 22 C 1.38142 * 119.94024 * 179.74340 * 21 20 19 23 23 C 1.38270 * 120.05575 * 0.50842 * 22 21 20 24 24 C 1.38278 * 120.11745 * 359.76471 * 23 22 21 25 25 C 1.38134 * 120.05659 * 359.97438 * 24 23 22 26 26 C 1.39235 * 118.36600 * 0.55134 * 18 17 16 27 27 C 1.38316 * 119.28461 * 359.72931 * 26 18 17 28 28 N 1.31609 * 120.97449 * 359.97438 * 27 26 18 29 29 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47383 * 300.00070 * 1 2 3 31 31 H 1.09002 * 109.47204 * 60.00279 * 1 2 3 32 32 H 0.97003 * 120.00179 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47246 * 263.72445 * 13 12 2 34 34 H 1.08991 * 109.47514 * 143.72115 * 13 12 2 35 35 H 1.09000 * 109.47141 * 23.71599 * 13 12 2 36 36 H 1.07996 * 120.50957 * 359.97438 * 17 16 14 37 37 H 1.07991 * 120.02869 * 359.97438 * 21 20 19 38 38 H 1.07994 * 119.97218 * 180.27885 * 22 21 20 39 39 H 1.08001 * 119.94188 * 179.74486 * 23 22 21 40 40 H 1.07999 * 119.96564 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.02961 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.35913 * 179.75076 * 26 18 17 43 43 H 1.07997 * 119.50964 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1371 -0.8596 3.5565 8 14 0.6257 1.2798 2.6542 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9953 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0832 15 8 3.1179 1.1162 -1.8724 16 6 3.2494 -0.7201 -3.3159 17 6 4.1098 -0.0642 -4.1900 18 6 4.5340 -0.7237 -5.3409 19 8 5.3782 -0.1212 -6.2165 20 6 5.7196 1.1737 -5.9853 21 6 5.1623 2.1868 -6.7523 22 6 5.5070 3.5027 -6.5117 23 6 6.4144 3.8098 -5.5147 24 6 6.9755 2.8015 -4.7526 25 6 6.6302 1.4845 -4.9855 26 6 4.0664 -2.0143 -5.5741 27 6 3.2075 -2.5981 -4.6606 28 7 2.8286 -1.9520 -3.5784 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9030 -0.5280 4.4376 33 1 2.4697 -2.7350 -1.0704 34 1 1.5147 -2.2585 -2.4949 35 1 0.7458 -2.3296 -0.8912 36 1 4.4473 0.9394 -3.9774 37 1 4.4570 1.9471 -7.5341 38 1 5.0702 4.2921 -7.1054 39 1 6.6857 4.8389 -5.3309 40 1 7.6844 3.0441 -3.9748 41 1 7.0690 0.6973 -4.3904 42 1 4.3715 -2.5539 -6.4585 43 1 2.8423 -3.5989 -4.8380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174291546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:31 Heat of formation + Delta-G solvation = 34.918496 kcal Electronic energy + Delta-G solvation = -27148.804666 eV Core-core repulsion = 23354.370031 eV Total energy + Delta-G solvation = -3794.434635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39920 -39.99611 -38.64107 -37.76304 -35.57729 -32.94422 -31.97779 -31.50895 -31.21036 -30.36854 -29.79387 -26.15840 -25.18018 -24.53472 -24.33295 -23.05638 -22.18579 -21.43192 -19.54858 -18.28678 -17.43217 -16.95642 -16.66683 -16.33165 -16.00717 -15.97587 -15.63173 -15.08731 -14.76520 -14.67061 -14.20088 -14.09229 -13.78577 -13.74558 -13.13758 -13.00603 -12.83298 -12.71417 -12.25522 -12.20376 -12.14808 -11.81963 -11.67276 -11.54527 -11.30661 -11.10004 -10.66551 -10.11281 -9.76343 -9.53027 -9.36227 -9.30984 -9.27736 -9.26446 -8.94630 -8.80433 -8.60652 -7.63207 -6.11635 -4.12035 0.67384 0.74822 1.02499 1.11983 2.72780 3.08773 3.25316 3.38268 3.41069 3.49555 3.61569 4.00179 4.28963 4.37449 4.51162 4.57806 4.60755 4.77906 4.83186 4.96572 5.04319 5.06662 5.18547 5.20810 5.37159 5.50512 5.64854 5.68635 5.80783 6.01738 6.04268 6.11076 6.16838 6.21033 6.26440 6.36491 6.42152 6.47598 6.58216 6.83254 6.92110 7.13796 7.18169 7.37980 7.64407 7.75007 8.20731 8.48752 8.81164 8.91952 9.48991 11.01199 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.003494 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.543355 B = 8012.205934 C = 9257.697468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.226 3.774 3 H 0.062 0.938 4 C -0.525 4.525 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.558 5.558 13 C 0.067 3.933 14 C 0.551 3.449 15 O -0.547 6.547 16 C 0.134 3.866 17 C -0.193 4.193 18 C 0.156 3.844 19 O -0.251 6.251 20 C 0.074 3.926 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.114 4.114 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.188 4.188 27 C 0.125 3.875 28 N -0.466 5.466 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.145 0.855 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 1.994 -22.817 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.124 3.876 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.285 5.285 13 C -0.076 4.076 14 C 0.336 3.664 15 O -0.426 6.426 16 C -0.004 4.004 17 C -0.215 4.215 18 C 0.105 3.895 19 O -0.162 6.162 20 C 0.032 3.968 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.132 4.132 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.209 4.209 27 C -0.032 4.032 28 N -0.181 5.181 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.230 2.126 -22.038 22.750 hybrid contribution 0.046 1.040 -0.125 1.049 sum 5.276 3.166 -22.163 23.002 Atomic orbital electron populations 1.22455 0.98827 1.01302 0.99252 1.19394 0.90175 0.95191 0.82859 0.91999 1.21144 1.32632 1.14190 0.88348 0.90277 1.24854 0.95687 0.96578 0.95581 1.69873 1.45294 1.40187 0.97934 0.86924 0.80490 0.83882 0.77454 1.20341 1.22130 1.18816 1.47798 1.46675 1.12666 1.21405 1.22496 1.00214 0.80788 1.04121 1.17810 0.80213 0.85863 0.82499 1.90731 1.57906 1.17146 1.76790 1.21378 0.93577 0.90357 0.95081 1.22255 1.01436 1.03170 0.94653 1.19393 0.89234 0.92481 0.88430 1.84366 1.59756 1.23920 1.48110 1.18669 0.97782 0.82133 0.98233 1.21231 0.99739 0.91996 1.00694 1.21075 0.97695 0.95591 0.98066 1.21322 0.96659 0.99822 0.95390 1.21121 0.99729 0.91845 0.99237 1.21524 0.97869 0.97957 0.97253 1.21620 1.02265 0.93610 1.03435 1.22905 0.92251 0.99634 0.88433 1.68242 1.23029 1.07847 1.18985 0.92286 0.93083 0.94778 0.92458 0.93526 0.87051 0.92002 0.82971 0.85023 0.85035 0.85257 0.84924 0.85020 0.83689 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.66 37.16 0.32 -3.25 16 2 C 0.23 5.66 2.22 -69.08 -0.15 5.51 16 3 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 4 C -0.52 -14.96 8.95 -34.44 -0.31 -15.27 16 5 H 0.08 2.44 7.89 -52.49 -0.41 2.03 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 8 Si 0.88 22.12 24.37 -169.99 -4.14 17.98 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.26 -6.51 6.53 56.52 0.37 -6.15 16 12 N -0.56 -12.39 2.75 -176.26 -0.49 -12.87 16 13 C 0.07 1.25 8.74 59.85 0.52 1.77 16 14 C 0.55 11.98 7.67 -12.17 -0.09 11.88 16 15 O -0.55 -13.38 15.65 5.36 0.08 -13.30 16 16 C 0.13 2.33 6.66 -83.04 -0.55 1.78 16 17 C -0.19 -3.01 8.52 -38.88 -0.33 -3.34 16 18 C 0.16 2.01 6.66 -38.83 -0.26 1.75 16 19 O -0.25 -3.09 10.00 -3.08 -0.03 -3.12 16 20 C 0.07 0.87 4.70 -39.20 -0.18 0.68 16 21 C -0.12 -1.20 9.99 -39.43 -0.39 -1.60 16 22 C -0.11 -0.94 10.04 -39.60 -0.40 -1.33 16 23 C -0.11 -1.01 10.04 -39.55 -0.40 -1.41 16 24 C -0.10 -1.00 10.04 -39.60 -0.40 -1.40 16 25 C -0.13 -1.45 8.52 -39.43 -0.34 -1.78 16 26 C -0.19 -1.98 10.08 -39.18 -0.39 -2.38 16 27 C 0.13 1.37 11.17 -17.62 -0.20 1.17 16 28 N -0.47 -6.92 5.92 -9.87 -0.06 -6.98 16 29 H 0.06 1.23 6.67 -51.93 -0.35 0.88 16 30 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.11 1.81 4.87 -63.08 -0.31 1.50 16 35 H 0.06 1.14 6.44 -51.93 -0.33 0.81 16 36 H 0.15 2.51 5.77 -52.49 -0.30 2.21 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -34.23 353.15 -7.36 -41.59 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.17 Total: 3.08 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.65 Total: -5.12 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.23 Total: -46.43 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.05 Total: -16.42 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.23 -7.36 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174291546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.507 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds