Wall clock time and date at job start Tue Mar 31 2020 14:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47113 * 2 1 4 4 C 1.50705 * 109.47033 * 119.99860 * 2 1 3 5 5 H 1.07996 * 119.99861 * 119.99880 * 4 2 1 6 6 C 1.37872 * 120.00182 * 300.00416 * 4 2 1 7 7 N 1.31507 * 120.00147 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00041 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46741 * 90.00211 * 8 6 4 10 10 H 1.48493 * 109.47319 * 209.99989 * 8 6 4 11 11 H 1.48503 * 109.46905 * 330.00520 * 8 6 4 12 12 N 1.46498 * 109.47343 * 239.99827 * 2 1 3 13 13 C 1.46497 * 120.00449 * 300.00393 * 12 2 1 14 14 C 1.34776 * 119.99750 * 120.00137 * 12 2 1 15 15 O 1.21511 * 120.00468 * 2.06951 * 14 12 2 16 16 C 1.48186 * 119.99994 * 182.07128 * 14 12 2 17 17 C 1.39095 * 119.69716 * 183.60288 * 16 14 12 18 18 C 1.39260 * 118.98026 * 179.70943 * 17 16 14 19 19 O 1.35732 * 120.81884 * 180.29907 * 18 17 16 20 20 C 1.35895 * 117.99969 * 355.41449 * 19 18 17 21 21 C 1.38754 * 120.05633 * 255.15979 * 20 19 18 22 22 C 1.38142 * 119.94024 * 179.74340 * 21 20 19 23 23 C 1.38270 * 120.05575 * 0.50842 * 22 21 20 24 24 C 1.38278 * 120.11745 * 359.76471 * 23 22 21 25 25 C 1.38134 * 120.05659 * 359.97438 * 24 23 22 26 26 C 1.39235 * 118.36600 * 0.55134 * 18 17 16 27 27 C 1.38316 * 119.28461 * 359.72931 * 26 18 17 28 28 N 1.31609 * 120.97449 * 359.97438 * 27 26 18 29 29 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47383 * 300.00070 * 1 2 3 31 31 H 1.09002 * 109.47204 * 60.00279 * 1 2 3 32 32 H 0.97003 * 120.00179 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47246 * 263.72445 * 13 12 2 34 34 H 1.08991 * 109.47514 * 143.72115 * 13 12 2 35 35 H 1.09000 * 109.47141 * 23.71599 * 13 12 2 36 36 H 1.07996 * 120.50957 * 359.97438 * 17 16 14 37 37 H 1.07991 * 120.02869 * 359.97438 * 21 20 19 38 38 H 1.07994 * 119.97218 * 180.27885 * 22 21 20 39 39 H 1.08001 * 119.94188 * 179.74486 * 23 22 21 40 40 H 1.07999 * 119.96564 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.02961 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.35913 * 179.75076 * 26 18 17 43 43 H 1.07997 * 119.50964 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1371 -0.8596 3.5565 8 14 0.6257 1.2798 2.6542 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9953 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0832 15 8 3.1179 1.1162 -1.8724 16 6 3.2494 -0.7201 -3.3159 17 6 4.1098 -0.0642 -4.1900 18 6 4.5340 -0.7237 -5.3409 19 8 5.3782 -0.1212 -6.2165 20 6 5.7196 1.1737 -5.9853 21 6 5.1623 2.1868 -6.7523 22 6 5.5070 3.5027 -6.5117 23 6 6.4144 3.8098 -5.5147 24 6 6.9755 2.8015 -4.7526 25 6 6.6302 1.4845 -4.9855 26 6 4.0664 -2.0143 -5.5741 27 6 3.2075 -2.5981 -4.6606 28 7 2.8286 -1.9520 -3.5784 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9030 -0.5280 4.4376 33 1 2.4697 -2.7350 -1.0704 34 1 1.5147 -2.2585 -2.4949 35 1 0.7458 -2.3296 -0.8912 36 1 4.4473 0.9394 -3.9774 37 1 4.4570 1.9471 -7.5341 38 1 5.0702 4.2921 -7.1054 39 1 6.6857 4.8389 -5.3309 40 1 7.6844 3.0441 -3.9748 41 1 7.0690 0.6973 -4.3904 42 1 4.3715 -2.5539 -6.4585 43 1 2.8423 -3.5989 -4.8380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174291546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:30 Heat of formation + Delta-G solvation = 13.216531 kcal Electronic energy + Delta-G solvation = -27149.745733 eV Core-core repulsion = 23354.370031 eV Total energy + Delta-G solvation = -3795.375703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40024 -41.21748 -39.93716 -38.69327 -37.40128 -34.86556 -33.32845 -32.60564 -32.04219 -31.87459 -30.81159 -27.74376 -27.20007 -25.95359 -25.27546 -23.84746 -23.16868 -22.89138 -20.92968 -19.59679 -18.87642 -18.53677 -17.89185 -17.39603 -17.24176 -17.21078 -16.96227 -16.61893 -16.18507 -15.76231 -15.43592 -15.13260 -14.91640 -14.84859 -14.69566 -14.50376 -14.15043 -13.98490 -13.81104 -13.66330 -13.55450 -13.14258 -13.04591 -12.99044 -12.62507 -12.48807 -12.07829 -12.07336 -11.63051 -11.40278 -11.22495 -10.82270 -10.43911 -10.22229 -10.17051 -10.05147 -9.76314 -9.38405 -8.37023 -6.42610 -0.47647 -0.06360 0.12851 0.26834 1.25193 1.34297 1.43758 1.69112 1.86925 2.08037 2.26306 2.70378 2.76448 2.97553 3.08750 3.44118 3.68584 3.83937 3.84670 3.90801 4.13904 4.21815 4.27344 4.36473 4.41259 4.44169 4.45496 4.56515 4.63578 4.69981 4.71669 4.84749 4.93062 4.97088 5.00332 5.16661 5.24948 5.30508 5.31590 5.42221 5.43134 5.54562 5.70295 5.77491 6.15657 6.27071 6.55338 6.59829 6.72176 7.10556 7.26157 8.79383 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.003494 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.543355 B = 8012.205934 C = 9257.697468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.227 3.773 3 H 0.034 0.966 4 C -0.529 4.529 5 H 0.039 0.961 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.944 3.056 9 H -0.250 1.250 10 H -0.292 1.292 11 H -0.262 1.262 12 N -0.569 5.569 13 C 0.072 3.928 14 C 0.543 3.457 15 O -0.588 6.588 16 C 0.109 3.891 17 C -0.198 4.198 18 C 0.151 3.849 19 O -0.249 6.249 20 C 0.049 3.951 21 C -0.126 4.126 22 C -0.107 4.107 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.147 4.147 26 C -0.163 4.163 27 C 0.134 3.866 28 N -0.480 5.480 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.270 0.730 33 H 0.033 0.967 34 H 0.143 0.857 35 H 0.061 0.939 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.124 0.876 42 H 0.187 0.813 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 1.869 -25.785 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.124 3.876 3 H 0.052 0.948 4 C -0.567 4.567 5 H 0.058 0.942 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.770 3.230 9 H -0.175 1.175 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.296 5.296 13 C -0.069 4.069 14 C 0.331 3.669 15 O -0.470 6.470 16 C -0.027 4.027 17 C -0.220 4.220 18 C 0.100 3.900 19 O -0.159 6.159 20 C 0.008 3.992 21 C -0.144 4.144 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.165 4.165 26 C -0.183 4.183 27 C -0.023 4.023 28 N -0.196 5.196 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.163 0.837 41 H 0.142 0.858 42 H 0.204 0.796 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.054 1.974 -25.032 25.435 hybrid contribution 0.580 1.004 0.669 1.339 sum 4.635 2.979 -24.363 24.978 Atomic orbital electron populations 1.22308 0.96091 1.02490 1.00125 1.19114 0.92227 0.93459 0.82809 0.94846 1.21299 1.32038 1.13104 0.90298 0.94246 1.25668 0.97110 0.99662 0.95070 1.70004 1.47015 1.42164 0.98627 0.85939 0.79934 0.79873 0.77259 1.17498 1.21952 1.18646 1.47873 1.47150 1.13878 1.20712 1.22671 0.99517 0.78655 1.06101 1.18499 0.79173 0.85638 0.83627 1.90679 1.59191 1.19055 1.78084 1.20655 0.96094 0.91825 0.94159 1.22085 1.01617 1.02637 0.95693 1.19608 0.89336 0.93354 0.87701 1.84378 1.59506 1.24393 1.47648 1.18914 0.98710 0.82327 0.99266 1.21506 0.99869 0.92261 1.00779 1.21482 0.97148 0.95822 0.97976 1.21708 0.96018 1.00831 0.94764 1.21402 1.00252 0.91675 0.99899 1.21619 0.98610 0.98607 0.97710 1.22128 0.99984 0.92148 1.04053 1.23695 0.91213 1.00828 0.86583 1.67962 1.23844 1.06765 1.20982 0.90981 0.93512 0.92441 0.92116 0.94796 0.84013 0.92008 0.84908 0.83581 0.82107 0.82656 0.83705 0.85820 0.79586 0.76364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.62 8.66 71.98 0.62 -5.99 16 2 C 0.23 11.64 2.22 44.25 0.10 11.74 16 3 H 0.03 1.90 5.96 -2.39 -0.01 1.89 16 4 C -0.53 -31.32 8.95 25.60 0.23 -31.09 16 5 H 0.04 2.58 7.89 -2.91 -0.02 2.55 16 6 C 0.02 1.41 5.45 84.65 0.46 1.87 16 7 N -0.94 -59.01 13.96 21.44 0.30 -58.71 16 8 Si 0.94 45.95 24.37 68.60 1.67 47.62 16 9 H -0.25 -11.06 6.87 99.48 0.68 -10.38 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.26 -12.61 6.53 99.48 0.65 -11.96 16 12 N -0.57 -25.89 2.75 -829.84 -2.28 -28.18 16 13 C 0.07 2.70 8.74 127.77 1.12 3.81 16 14 C 0.54 24.49 7.67 86.89 0.67 25.15 16 15 O -0.59 -30.37 15.65 -3.75 -0.06 -30.43 16 16 C 0.11 3.82 6.66 41.85 0.28 4.10 16 17 C -0.20 -6.24 8.52 22.72 0.19 -6.04 16 18 C 0.15 3.68 6.66 22.76 0.15 3.83 16 19 O -0.25 -5.85 10.00 -33.93 -0.34 -6.19 16 20 C 0.05 1.15 4.70 22.52 0.11 1.26 16 21 C -0.13 -2.43 9.99 22.37 0.22 -2.20 16 22 C -0.11 -1.70 10.04 22.25 0.22 -1.47 16 23 C -0.12 -1.91 10.04 22.29 0.22 -1.68 16 24 C -0.11 -2.28 10.04 22.25 0.22 -2.06 16 25 C -0.15 -3.46 8.52 22.37 0.19 -3.27 16 26 C -0.16 -2.79 10.08 22.53 0.23 -2.56 16 27 C 0.13 2.39 11.17 84.74 0.95 3.34 16 28 N -0.48 -13.41 5.92 -185.14 -1.10 -14.51 16 29 H 0.07 2.90 6.67 -2.39 -0.02 2.89 16 30 H 0.05 2.05 3.27 -2.39 -0.01 2.05 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 33 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.14 4.40 4.87 -24.40 -0.12 4.28 16 35 H 0.06 2.26 6.44 -2.39 -0.02 2.24 16 36 H 0.13 4.65 5.77 -2.91 -0.02 4.64 16 37 H 0.15 2.27 8.06 -2.92 -0.02 2.24 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -79.49 353.15 5.23 -74.25 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.85 Total: 17.41 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.18 Total: -1.27 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -3.08 Total: -101.39 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.40 Total: -36.62 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -79.49 5.23 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174291546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.471 kcal (2) G-P(sol) polarization free energy of solvation -79.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds