Wall clock time and date at job start Tue Mar 31 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46735 * 2 1 4 4 C 1.50704 * 109.46853 * 119.99423 * 2 1 3 5 5 H 1.07999 * 119.99653 * 120.00196 * 4 2 1 6 6 C 1.37869 * 120.00241 * 300.00618 * 4 2 1 7 7 N 1.31518 * 119.99984 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00057 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47172 * 59.99675 * 8 6 4 10 10 H 1.48504 * 109.47276 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47067 * 299.99571 * 8 6 4 12 12 N 1.46497 * 109.47399 * 239.99708 * 2 1 3 13 13 C 1.46502 * 120.00007 * 300.00022 * 12 2 1 14 14 C 1.34776 * 119.99910 * 119.99816 * 12 2 1 15 15 O 1.21532 * 120.00242 * 355.10912 * 14 12 2 16 16 C 1.48009 * 119.99933 * 175.10497 * 14 12 2 17 17 C 1.39576 * 119.99832 * 327.78914 * 16 14 12 18 18 C 1.37787 * 120.00419 * 179.97438 * 17 16 14 19 19 C 1.39610 * 119.99755 * 359.97438 * 18 17 16 20 20 C 1.48009 * 120.00272 * 180.02562 * 19 18 17 21 21 O 1.21605 * 120.00519 * 27.28624 * 20 19 18 22 22 C 1.47095 * 119.99712 * 207.28555 * 20 19 18 23 23 C 1.46757 * 127.03803 * 7.80001 * 22 20 19 24 24 C 1.34409 * 106.38409 * 180.11982 * 23 22 20 25 25 N 1.36475 * 109.11926 * 359.59942 * 24 23 22 26 26 H 0.96998 * 124.80245 * 180.26443 * 25 24 23 27 27 C 1.34602 * 110.39453 * 0.26897 * 25 24 23 28 28 C 1.39607 * 119.98940 * 0.27580 * 19 18 17 29 29 C 1.37788 * 120.00029 * 359.42430 * 28 19 18 30 30 H 1.08997 * 109.47765 * 300.00421 * 1 2 3 31 31 H 1.09008 * 109.47037 * 60.00757 * 1 2 3 32 32 H 1.08999 * 109.47157 * 179.97438 * 1 2 3 33 33 H 0.97002 * 120.00153 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.46776 * 271.25735 * 13 12 2 35 35 H 1.08999 * 109.47033 * 31.25899 * 13 12 2 36 36 H 1.09000 * 109.46795 * 151.25576 * 13 12 2 37 37 H 1.07995 * 119.99987 * 359.97429 * 17 16 14 38 38 H 1.08004 * 120.00181 * 179.97438 * 18 17 16 39 39 H 1.08001 * 126.80341 * 0.02562 * 23 22 20 40 40 H 1.08001 * 125.43539 * 179.86379 * 24 23 22 41 41 H 1.08000 * 125.91224 * 179.97438 * 27 25 24 42 42 H 1.08012 * 119.99964 * 179.72683 * 28 19 18 43 43 H 1.07994 * 120.00186 * 180.31989 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9433 0.8303 2.6033 8 14 2.3223 -1.1193 4.0080 9 1 3.8073 -1.1187 4.0079 10 1 1.8276 -0.4190 5.2205 11 1 1.8279 -2.5196 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0137 1.1507 -1.9380 16 6 3.3757 -0.7611 -3.2344 17 6 3.7251 -2.1064 -3.1070 18 6 4.2668 -2.7821 -4.1787 19 6 4.4659 -2.1211 -5.3922 20 6 5.0473 -2.8469 -6.5436 21 8 4.9015 -4.0503 -6.6404 22 6 5.8016 -2.1125 -7.5710 23 6 6.2062 -0.7024 -7.5316 24 6 6.8686 -0.4658 -8.6769 25 7 6.9129 -1.6142 -9.4130 26 1 7.3404 -1.7003 -10.2794 27 6 6.2792 -2.6104 -8.7667 28 6 4.1213 -0.7741 -5.5178 29 6 3.5738 -0.1003 -4.4478 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7086 1.1615 3.4843 34 1 2.4038 -2.7378 -0.9524 35 1 0.6807 -2.2945 -1.0041 36 1 1.6458 -2.2909 -2.4996 37 1 3.5707 -2.6179 -2.1684 38 1 4.5375 -3.8230 -4.0800 39 1 6.0093 0.0054 -6.7399 40 1 7.3007 0.4807 -8.9664 41 1 6.1640 -3.6237 -9.1221 42 1 4.2793 -0.2614 -6.4553 43 1 3.3024 0.9403 -4.5466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176300894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:45 Heat of formation + Delta-G solvation = 18.743769 kcal Electronic energy + Delta-G solvation = -26439.723950 eV Core-core repulsion = 22644.587927 eV Total energy + Delta-G solvation = -3795.136024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40573 -40.03870 -38.93324 -37.47224 -35.41546 -33.13975 -32.15938 -30.99718 -30.70654 -29.47894 -29.03224 -26.39647 -25.35631 -25.13279 -22.78068 -22.50958 -20.96820 -20.89032 -19.48358 -18.85897 -18.64052 -16.89424 -16.31155 -16.20963 -15.69084 -15.29744 -15.04052 -14.66893 -14.57804 -14.40549 -14.15383 -14.02368 -13.74627 -13.48520 -13.35638 -13.07253 -12.64399 -12.50421 -12.49751 -12.17060 -11.99621 -11.54443 -11.41140 -11.07686 -10.93891 -10.74121 -10.69594 -10.26931 -10.15679 -9.90503 -9.21953 -9.18533 -9.09912 -8.92415 -8.79508 -8.67718 -8.42762 -7.61938 -6.07218 -4.15626 0.50236 1.42380 1.48661 2.07455 2.82740 2.96541 3.28819 3.33841 3.35473 3.47914 3.86231 3.98358 4.09090 4.40249 4.61112 4.76868 4.83882 4.98785 5.02664 5.07069 5.20522 5.23995 5.39702 5.46566 5.54159 5.68084 5.78181 5.84753 5.98701 6.08284 6.26381 6.29138 6.35690 6.37735 6.46928 6.57194 6.77350 6.81885 6.87587 7.02441 7.05414 7.41077 7.50562 7.55632 7.70699 8.00854 8.17739 8.48336 8.80380 8.99000 9.50815 10.98018 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025819 B = 0.002452 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.229008 B =11417.144953 C =11777.325613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.583 5.583 13 C 0.080 3.920 14 C 0.541 3.459 15 O -0.545 6.545 16 C -0.090 4.090 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.140 4.140 20 C 0.470 3.530 21 O -0.471 6.471 22 C -0.257 4.257 23 C -0.158 4.158 24 C -0.024 4.024 25 N -0.550 5.550 26 H 0.418 0.582 27 C 0.074 3.926 28 C -0.090 4.090 29 C -0.082 4.082 30 H 0.094 0.906 31 H 0.012 0.988 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.170 0.830 41 H 0.178 0.822 42 H 0.140 0.860 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 -5.774 -23.606 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.064 4.064 14 C 0.328 3.672 15 O -0.425 6.425 16 C -0.093 4.093 17 C -0.124 4.124 18 C -0.095 4.095 19 C -0.141 4.141 20 C 0.351 3.649 21 O -0.349 6.349 22 C -0.265 4.265 23 C -0.181 4.181 24 C -0.151 4.151 25 N -0.145 5.145 26 H 0.254 0.746 27 C -0.063 4.063 28 C -0.108 4.108 29 C -0.101 4.101 30 H 0.113 0.887 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.187 0.813 41 H 0.195 0.805 42 H 0.158 0.842 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.267 -5.616 -23.494 25.872 hybrid contribution 0.533 -0.484 0.563 0.914 sum 9.800 -6.099 -22.931 25.673 Atomic orbital electron populations 1.22096 0.98087 0.99450 1.00954 1.18997 0.91060 0.94532 0.79625 0.91762 1.21264 1.32000 1.13064 0.90207 0.92275 1.24890 0.94927 0.94977 0.98963 1.69871 1.36238 1.22526 1.23908 0.86538 0.79249 0.79570 0.81928 1.20231 1.21171 1.20205 1.48186 1.48232 1.11768 1.23169 1.21929 1.01537 0.83136 0.99800 1.18318 0.79749 0.86777 0.82393 1.90730 1.61113 1.14959 1.75670 1.20476 0.99501 0.94285 0.95049 1.21833 0.97217 0.93504 0.99863 1.21215 0.96640 0.99967 0.91695 1.20375 1.03334 0.95021 0.95405 1.19624 0.75457 0.86945 0.82857 1.90595 1.52569 1.16075 1.75626 1.21159 1.11645 0.95677 0.98034 1.22385 1.02319 0.94906 0.98510 1.21869 1.07626 0.91160 0.94424 1.41694 1.44255 1.09358 1.19162 0.74579 1.22332 0.96635 0.93910 0.93397 1.21491 0.97185 0.92869 0.99241 1.21221 0.97165 1.00380 0.91359 0.88712 0.96869 0.95030 0.92595 0.92834 0.90819 0.92104 0.83659 0.84898 0.82758 0.81269 0.80521 0.84244 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.60 2.63 -69.08 -0.18 6.42 16 3 H 0.06 1.90 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.18 8.37 -34.44 -0.29 -14.47 16 5 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.58 -12.61 2.75 -176.32 -0.49 -13.09 16 13 C 0.08 1.36 8.04 59.85 0.48 1.84 16 14 C 0.54 11.55 7.41 -12.25 -0.09 11.46 16 15 O -0.55 -13.62 16.09 5.34 0.09 -13.54 16 16 C -0.09 -1.51 5.27 -104.89 -0.55 -2.06 16 17 C -0.11 -1.55 7.59 -39.25 -0.30 -1.84 16 18 C -0.08 -1.02 9.58 -39.23 -0.38 -1.40 16 19 C -0.14 -1.81 5.77 -104.87 -0.61 -2.42 16 20 C 0.47 5.97 6.95 -31.99 -0.22 5.75 16 21 O -0.47 -6.98 17.24 5.27 0.09 -6.89 16 22 C -0.26 -2.65 6.11 -102.93 -0.63 -3.28 16 23 C -0.16 -1.36 9.17 -37.49 -0.34 -1.70 16 24 C -0.02 -0.14 11.86 -16.84 -0.20 -0.34 16 25 N -0.55 -2.79 5.89 -12.56 -0.07 -2.86 16 26 H 0.42 0.63 8.96 -40.82 -0.37 0.27 16 27 C 0.07 0.57 11.78 -16.41 -0.19 0.37 16 28 C -0.09 -1.08 8.28 -39.24 -0.32 -1.41 16 29 C -0.08 -1.19 9.58 -39.24 -0.38 -1.56 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 31 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.03 0.69 6.67 -51.93 -0.35 0.35 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.05 0.86 6.77 -51.93 -0.35 0.50 16 35 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 36 H 0.06 0.89 5.84 -51.93 -0.30 0.58 16 37 H 0.15 2.04 5.06 -52.49 -0.27 1.77 16 38 H 0.13 1.61 7.87 -52.48 -0.41 1.19 16 39 H 0.15 1.25 6.14 -52.49 -0.32 0.93 16 40 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.14 1.34 5.42 -52.48 -0.28 1.05 16 43 H 0.14 1.90 7.95 -52.49 -0.42 1.48 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -34.30 357.09 -8.24 -42.54 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.88 Total: 3.04 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.96 Total: -6.17 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.07 Total: -40.37 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.18 Total: -20.42 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.30 -8.24 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176300894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.281 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds