Wall clock time and date at job start Tue Mar 31 2020 14:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46735 * 2 1 4 4 C 1.50704 * 109.46853 * 119.99423 * 2 1 3 5 5 H 1.07999 * 119.99653 * 120.00196 * 4 2 1 6 6 C 1.37869 * 120.00241 * 300.00618 * 4 2 1 7 7 N 1.31518 * 119.99984 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00057 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47172 * 59.99675 * 8 6 4 10 10 H 1.48504 * 109.47276 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47067 * 299.99571 * 8 6 4 12 12 N 1.46497 * 109.47399 * 239.99708 * 2 1 3 13 13 C 1.46502 * 120.00007 * 300.00022 * 12 2 1 14 14 C 1.34776 * 119.99910 * 119.99816 * 12 2 1 15 15 O 1.21532 * 120.00242 * 355.10912 * 14 12 2 16 16 C 1.48009 * 119.99933 * 175.10497 * 14 12 2 17 17 C 1.39576 * 119.99832 * 327.78914 * 16 14 12 18 18 C 1.37787 * 120.00419 * 179.97438 * 17 16 14 19 19 C 1.39610 * 119.99755 * 359.97438 * 18 17 16 20 20 C 1.48009 * 120.00272 * 180.02562 * 19 18 17 21 21 O 1.21605 * 120.00519 * 27.28624 * 20 19 18 22 22 C 1.47095 * 119.99712 * 207.28555 * 20 19 18 23 23 C 1.46757 * 127.03803 * 7.80001 * 22 20 19 24 24 C 1.34409 * 106.38409 * 180.11982 * 23 22 20 25 25 N 1.36475 * 109.11926 * 359.59942 * 24 23 22 26 26 H 0.96998 * 124.80245 * 180.26443 * 25 24 23 27 27 C 1.34602 * 110.39453 * 0.26897 * 25 24 23 28 28 C 1.39607 * 119.98940 * 0.27580 * 19 18 17 29 29 C 1.37788 * 120.00029 * 359.42430 * 28 19 18 30 30 H 1.08997 * 109.47765 * 300.00421 * 1 2 3 31 31 H 1.09008 * 109.47037 * 60.00757 * 1 2 3 32 32 H 1.08999 * 109.47157 * 179.97438 * 1 2 3 33 33 H 0.97002 * 120.00153 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.46776 * 271.25735 * 13 12 2 35 35 H 1.08999 * 109.47033 * 31.25899 * 13 12 2 36 36 H 1.09000 * 109.46795 * 151.25576 * 13 12 2 37 37 H 1.07995 * 119.99987 * 359.97429 * 17 16 14 38 38 H 1.08004 * 120.00181 * 179.97438 * 18 17 16 39 39 H 1.08001 * 126.80341 * 0.02562 * 23 22 20 40 40 H 1.08001 * 125.43539 * 179.86379 * 24 23 22 41 41 H 1.08000 * 125.91224 * 179.97438 * 27 25 24 42 42 H 1.08012 * 119.99964 * 179.72683 * 28 19 18 43 43 H 1.07994 * 120.00186 * 180.31989 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9433 0.8303 2.6033 8 14 2.3223 -1.1193 4.0080 9 1 3.8073 -1.1187 4.0079 10 1 1.8276 -0.4190 5.2205 11 1 1.8279 -2.5196 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0137 1.1507 -1.9380 16 6 3.3757 -0.7611 -3.2344 17 6 3.7251 -2.1064 -3.1070 18 6 4.2668 -2.7821 -4.1787 19 6 4.4659 -2.1211 -5.3922 20 6 5.0473 -2.8469 -6.5436 21 8 4.9015 -4.0503 -6.6404 22 6 5.8016 -2.1125 -7.5710 23 6 6.2062 -0.7024 -7.5316 24 6 6.8686 -0.4658 -8.6769 25 7 6.9129 -1.6142 -9.4130 26 1 7.3404 -1.7003 -10.2794 27 6 6.2792 -2.6104 -8.7667 28 6 4.1213 -0.7741 -5.5178 29 6 3.5738 -0.1003 -4.4478 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7086 1.1615 3.4843 34 1 2.4038 -2.7378 -0.9524 35 1 0.6807 -2.2945 -1.0041 36 1 1.6458 -2.2909 -2.4996 37 1 3.5707 -2.6179 -2.1684 38 1 4.5375 -3.8230 -4.0800 39 1 6.0093 0.0054 -6.7399 40 1 7.3007 0.4807 -8.9664 41 1 6.1640 -3.6237 -9.1221 42 1 4.2793 -0.2614 -6.4553 43 1 3.3024 0.9403 -4.5466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176300894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:44 Heat of formation + Delta-G solvation = -2.215754 kcal Electronic energy + Delta-G solvation = -26440.632824 eV Core-core repulsion = 22644.587927 eV Total energy + Delta-G solvation = -3796.044897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02251 -41.36195 -40.11503 -38.69960 -37.23611 -34.96421 -33.30150 -32.12082 -31.80852 -30.67250 -30.00273 -27.89593 -27.31006 -26.40370 -23.87310 -23.71799 -22.39357 -21.51908 -20.47362 -20.16386 -19.35004 -18.60373 -18.03615 -17.51937 -17.10310 -16.57564 -16.37204 -15.96227 -15.72772 -15.61720 -15.11865 -14.95972 -14.78323 -14.62655 -14.45836 -14.34734 -14.13411 -13.71852 -13.55530 -13.53589 -13.43649 -12.96788 -12.84664 -12.81144 -12.68696 -12.60836 -12.19652 -12.14138 -11.96281 -11.20130 -10.96256 -10.73373 -10.51159 -10.06378 -9.96274 -9.75876 -9.38573 -9.26167 -8.14476 -6.31372 -0.59255 0.34115 0.62115 1.42721 1.45063 1.51408 1.52680 1.78407 2.23341 2.33465 2.39586 2.47184 2.84854 3.13348 3.14793 3.57277 3.81727 3.93232 4.10737 4.25968 4.31085 4.37110 4.39076 4.48501 4.50284 4.64420 4.66909 4.77704 4.88078 4.95528 5.00783 5.02309 5.03585 5.09669 5.19393 5.30418 5.36446 5.45529 5.59765 5.65146 5.74543 5.79089 5.98550 6.01367 6.14013 6.59064 6.72262 6.72553 6.75241 7.23309 7.42389 8.89932 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025819 B = 0.002452 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.229008 B =11417.144953 C =11777.325613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.011 0.989 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.262 1.262 12 N -0.590 5.590 13 C 0.078 3.922 14 C 0.534 3.466 15 O -0.596 6.596 16 C -0.111 4.111 17 C -0.101 4.101 18 C -0.076 4.076 19 C -0.138 4.138 20 C 0.470 3.530 21 O -0.501 6.501 22 C -0.295 4.295 23 C -0.183 4.183 24 C -0.008 4.008 25 N -0.533 5.533 26 H 0.437 0.563 27 C 0.085 3.915 28 C -0.071 4.071 29 C -0.084 4.084 30 H 0.070 0.930 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.265 0.735 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.202 0.798 41 H 0.193 0.807 42 H 0.168 0.832 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.751 -7.475 -25.950 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.187 1.187 12 N -0.319 5.319 13 C -0.064 4.064 14 C 0.324 3.676 15 O -0.479 6.479 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.094 4.094 19 C -0.139 4.139 20 C 0.354 3.646 21 O -0.381 6.381 22 C -0.303 4.303 23 C -0.206 4.206 24 C -0.136 4.136 25 N -0.128 5.128 26 H 0.278 0.722 27 C -0.054 4.054 28 C -0.089 4.089 29 C -0.103 4.103 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.219 0.781 41 H 0.210 0.790 42 H 0.185 0.815 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.744 -7.342 -25.881 28.969 hybrid contribution 0.170 0.079 1.112 1.127 sum 10.914 -7.263 -24.770 28.025 Atomic orbital electron populations 1.21892 0.97005 1.00243 1.00072 1.18615 0.91844 0.92289 0.81308 0.97072 1.21522 1.32134 1.13196 0.90943 0.91922 1.25742 0.95041 0.95642 1.02022 1.70017 1.37176 1.23802 1.24556 0.85490 0.78396 0.78985 0.78032 1.20263 1.20913 1.18659 1.48163 1.48233 1.13429 1.22104 1.22165 1.01824 0.80589 1.01855 1.19033 0.79000 0.86433 0.83161 1.90685 1.62867 1.17316 1.77018 1.20151 1.01979 0.95157 0.94122 1.21791 0.97183 0.92482 1.00482 1.21359 0.96121 1.00550 0.91408 1.20673 1.02283 0.95344 0.95637 1.19800 0.75185 0.86636 0.83014 1.90579 1.54118 1.17084 1.76360 1.21117 1.13630 0.96735 0.98838 1.22482 1.03959 0.94299 0.99882 1.22339 1.05728 0.92245 0.93289 1.41749 1.42914 1.08493 1.19640 0.72230 1.22572 0.95386 0.94883 0.92590 1.21665 0.95377 0.92460 0.99391 1.21293 0.97279 1.00491 0.91231 0.91101 0.96171 0.93239 0.92574 0.91465 0.90802 0.89354 0.83209 0.83550 0.82910 0.78072 0.79002 0.81523 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 8.95 71.98 0.64 -5.94 16 2 C 0.26 13.91 2.63 44.25 0.12 14.03 16 3 H 0.01 0.72 6.91 -2.39 -0.02 0.70 16 4 C -0.54 -29.58 8.37 25.60 0.21 -29.37 16 5 H 0.06 3.31 7.62 -2.91 -0.02 3.28 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -53.18 11.32 21.44 0.24 -52.94 16 8 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 12 N -0.59 -26.12 2.75 -830.03 -2.28 -28.41 16 13 C 0.08 2.59 8.04 127.77 1.03 3.62 16 14 C 0.53 23.69 7.41 86.83 0.64 24.33 16 15 O -0.60 -31.58 16.09 -3.82 -0.06 -31.65 16 16 C -0.11 -3.74 5.27 -20.04 -0.11 -3.84 16 17 C -0.10 -2.87 7.59 22.49 0.17 -2.70 16 18 C -0.08 -1.93 9.58 22.49 0.22 -1.71 16 19 C -0.14 -3.38 5.77 -20.02 -0.12 -3.50 16 20 C 0.47 11.30 6.95 27.19 0.19 11.49 16 21 O -0.50 -14.32 17.24 -4.05 -0.07 -14.39 16 22 C -0.30 -5.46 6.11 -18.77 -0.11 -5.58 16 23 C -0.18 -2.69 9.17 23.62 0.22 -2.47 16 24 C -0.01 -0.07 11.86 83.09 0.99 0.91 16 25 N -0.53 -3.36 5.89 -193.65 -1.14 -4.50 16 26 H 0.44 -0.53 8.96 -92.71 -0.83 -1.36 16 27 C 0.09 1.05 11.78 84.22 0.99 2.04 16 28 C -0.07 -1.62 8.28 22.49 0.19 -1.43 16 29 C -0.08 -2.40 9.58 22.49 0.22 -2.19 16 30 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 31 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 2.20 6.67 -2.39 -0.02 2.18 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.07 2.06 6.77 -2.39 -0.02 2.05 16 35 H 0.07 2.45 6.43 -2.39 -0.02 2.44 16 36 H 0.09 2.46 5.84 -2.39 -0.01 2.45 16 37 H 0.15 4.04 5.06 -2.91 -0.01 4.03 16 38 H 0.15 3.30 7.87 -2.91 -0.02 3.28 16 39 H 0.15 2.18 6.14 -2.91 -0.02 2.16 16 40 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.17 2.86 5.42 -2.90 -0.02 2.84 16 43 H 0.14 3.84 7.95 -2.91 -0.02 3.82 16 Total: -1.00 -77.91 357.09 4.89 -73.02 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.24 Total: 14.59 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.93 Total: -1.02 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.18 Total: -85.85 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.13 Total: -46.04 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -77.91 4.89 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176300894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.808 kcal (2) G-P(sol) polarization free energy of solvation -77.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds