Wall clock time and date at job start Tue Mar 31 2020 15:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00387 * 2 1 4 4 C 1.52998 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47105 * 304.99329 * 4 3 2 6 6 C 1.52998 * 109.47355 * 64.99590 * 4 3 2 7 7 C 1.53004 * 109.46982 * 185.00071 * 4 3 2 8 8 N 1.46497 * 109.46845 * 175.00132 * 7 4 3 9 9 C 1.34779 * 119.99887 * 180.02562 * 8 7 4 10 10 O 1.21592 * 119.99915 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00173 * 179.97438 * 9 8 7 12 12 C 1.40132 * 119.99892 * 183.91963 * 11 9 8 13 13 C 1.38694 * 120.07584 * 334.47402 * 12 11 9 14 14 C 1.38201 * 120.01860 * 179.97438 * 13 12 11 15 15 C 1.38542 * 120.17921 * 359.97438 * 14 13 12 16 16 F 1.35096 * 119.92416 * 180.02562 * 15 14 13 17 17 C 1.38339 * 120.14754 * 0.04997 * 15 14 13 18 18 C 1.38741 * 119.98278 * 359.93200 * 17 15 14 19 19 O 1.35772 * 120.09139 * 180.32332 * 18 17 15 20 20 C 1.34801 * 117.00171 * 354.37025 * 19 18 17 21 21 H 1.08000 * 119.99963 * 354.63993 * 20 19 18 22 22 C 1.38630 * 120.00489 * 174.62884 * 20 19 18 23 23 N 1.31571 * 120.00520 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99837 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46995 * 89.99986 * 24 22 20 26 26 H 1.48496 * 109.47429 * 209.99626 * 24 22 20 27 27 H 1.48499 * 109.47103 * 330.00157 * 24 22 20 28 28 H 1.09009 * 109.47002 * 60.00693 * 1 2 3 29 29 H 1.09005 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47673 * 300.00586 * 1 2 3 31 31 H 1.09004 * 109.47305 * 59.99442 * 3 2 1 32 32 H 1.09003 * 109.46881 * 299.99699 * 3 2 1 33 33 H 1.08996 * 109.47222 * 300.00162 * 6 4 3 34 34 H 1.09002 * 109.46829 * 60.00077 * 6 4 3 35 35 H 1.08997 * 109.47109 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.47352 * 54.99526 * 7 4 3 37 37 H 1.09004 * 109.46764 * 294.99172 * 7 4 3 38 38 H 0.97000 * 120.00220 * 359.97438 * 8 7 4 39 39 H 0.97004 * 119.99984 * 3.91592 * 11 9 8 40 40 H 1.08000 * 119.98864 * 359.97438 * 13 12 11 41 41 H 1.08006 * 119.90812 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.01276 * 180.02562 * 17 15 14 43 43 H 0.96999 * 120.00175 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8428 6 6 3.9963 0.5363 -1.3063 7 6 4.1573 2.5769 0.1264 8 7 5.6120 2.4528 0.2470 9 6 6.3745 3.5573 0.3708 10 8 5.8550 4.6566 0.3819 11 7 7.7128 3.4432 0.4824 12 6 8.4981 4.5845 0.6934 13 6 8.0441 5.8272 0.2775 14 6 8.8193 6.9521 0.4867 15 6 10.0506 6.8428 1.1122 16 9 10.8040 7.9458 1.3146 17 6 10.5107 5.6067 1.5295 18 6 9.7376 4.4733 1.3230 19 8 10.1841 3.2599 1.7375 20 6 11.4350 3.2060 2.2370 21 1 12.0640 4.0836 2.2138 22 6 11.9140 2.0242 2.7807 23 7 13.1347 1.9717 3.2687 24 14 10.8262 0.5061 2.8206 25 1 11.0239 -0.2773 1.5745 26 1 11.1864 -0.3304 3.9934 27 1 9.4037 0.9190 2.9252 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.5533 -0.4556 -1.3958 34 1 3.6810 1.1524 -2.1484 35 1 5.0829 0.4506 -1.3060 36 1 3.7602 3.0736 1.0116 37 1 3.9150 3.1643 -0.7593 38 1 6.0264 1.5759 0.2386 39 1 8.1324 2.5711 0.4166 40 1 7.0844 5.9160 -0.2100 41 1 8.4638 7.9190 0.1625 42 1 11.4708 5.5241 2.0172 43 1 13.4700 1.1446 3.6488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178160623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:49 Heat of formation + Delta-G solvation = -119.605515 kcal Electronic energy + Delta-G solvation = -27233.992731 eV Core-core repulsion = 23002.088208 eV Total energy + Delta-G solvation = -4231.904524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.25259 -40.48097 -39.11119 -38.51862 -36.76294 -35.94041 -34.22235 -32.88316 -32.50013 -29.55647 -28.59671 -27.70742 -26.76580 -25.45912 -25.08056 -22.54562 -21.62968 -20.89865 -20.58017 -18.44471 -18.26281 -17.77615 -17.18161 -16.61387 -16.42352 -15.67983 -15.61771 -15.45286 -15.17506 -15.00284 -14.80664 -14.40564 -14.24880 -14.07711 -13.82641 -13.48080 -13.33265 -13.23980 -12.95692 -12.71498 -12.44957 -12.29085 -11.95966 -11.88212 -11.52776 -11.39676 -11.36132 -11.06369 -10.97006 -10.81819 -10.47889 -10.05777 -9.97042 -9.76273 -9.52228 -9.13930 -9.00376 -7.94382 -7.18107 -6.54169 -4.21490 1.78787 2.04293 2.64485 3.09920 3.13208 3.23343 3.29578 3.42366 4.08649 4.26717 4.29769 4.46189 4.52113 4.57956 4.65301 4.93416 4.94350 4.95004 5.01273 5.02678 5.17328 5.25363 5.28540 5.43443 5.51506 5.59506 5.63608 5.71920 5.86248 5.92923 5.99197 6.07054 6.33398 6.51133 6.64332 6.75334 6.83585 6.92447 6.99903 7.12311 7.47871 7.66095 7.87894 8.08564 8.66920 8.78989 9.34194 10.53148 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003207 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.153434 B = 8728.173712 C =11034.900078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.069 3.931 4 C -0.104 4.104 5 H 0.087 0.913 6 C -0.145 4.145 7 C 0.147 3.853 8 N -0.744 5.744 9 C 0.705 3.295 10 O -0.581 6.581 11 N -0.665 5.665 12 C 0.081 3.919 13 C -0.066 4.066 14 C -0.218 4.218 15 C 0.124 3.876 16 F -0.150 7.150 17 C -0.243 4.243 18 C 0.160 3.840 19 O -0.211 6.211 20 C -0.390 4.390 21 H 0.109 0.891 22 C 0.065 3.935 23 N -0.873 5.873 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.260 1.260 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.409 0.591 40 H 0.159 0.841 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.196 -3.263 -7.690 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.008 4.008 4 C -0.123 4.123 5 H 0.106 0.894 6 C -0.202 4.202 7 C 0.022 3.978 8 N -0.401 5.401 9 C 0.406 3.594 10 O -0.459 6.459 11 N -0.311 5.311 12 C -0.014 4.014 13 C -0.087 4.087 14 C -0.239 4.239 15 C 0.104 3.896 16 F -0.128 7.128 17 C -0.264 4.264 18 C 0.106 3.894 19 O -0.116 6.116 20 C -0.466 4.466 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.510 5.510 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.184 1.184 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.244 0.756 40 H 0.176 0.824 41 H 0.142 0.858 42 H 0.166 0.834 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.495 -2.805 -7.543 22.018 hybrid contribution 0.234 -1.073 0.287 1.135 sum -20.261 -3.878 -7.256 21.868 Atomic orbital electron populations 1.22744 0.80891 1.02793 1.00053 1.87860 1.19722 1.27777 1.95442 1.22431 0.92853 0.84815 1.00721 1.21335 0.93742 0.96666 1.00566 0.89450 1.21802 1.01195 1.01282 0.95963 1.21056 0.78643 0.95616 1.02435 1.45024 1.06995 1.08002 1.80083 1.15831 0.81042 0.84498 0.78061 1.90810 1.72635 1.24528 1.57954 1.42205 1.04483 1.10055 1.74365 1.16736 0.91079 0.87022 1.06560 1.21081 1.00341 0.89268 0.97969 1.20605 0.94925 0.99555 1.08775 1.17489 0.90127 0.82162 0.99868 1.91421 1.75972 1.52158 1.93298 1.20948 1.04293 0.90384 1.10770 1.18436 0.91639 0.85725 0.93647 1.83509 1.32839 1.24915 1.70328 1.20752 0.85485 1.01016 1.39306 0.87415 1.24469 0.96059 0.98483 0.94866 1.69644 1.15306 1.28698 1.37325 0.86205 0.81304 0.81357 0.78152 1.19709 1.20653 1.18409 0.94033 0.89606 0.94007 0.92826 0.92799 0.91623 0.92508 0.92420 0.91323 0.91221 0.76769 0.75598 0.82392 0.85786 0.83368 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.40 10.24 -35.23 -0.36 -3.76 16 3 C 0.07 0.52 5.32 37.16 0.20 0.71 16 4 C -0.10 -0.83 2.66 -90.62 -0.24 -1.07 16 5 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.15 -1.12 8.96 37.16 0.33 -0.78 16 7 C 0.15 1.42 5.06 -4.04 -0.02 1.40 16 8 N -0.74 -8.59 5.29 -65.22 -0.34 -8.93 16 9 C 0.70 11.09 8.45 -86.91 -0.73 10.35 16 10 O -0.58 -10.62 13.26 5.28 0.07 -10.55 16 11 N -0.67 -11.20 5.29 -14.07 -0.07 -11.27 16 12 C 0.08 1.59 6.48 -83.44 -0.54 1.05 16 13 C -0.07 -1.23 8.79 -39.43 -0.35 -1.57 16 14 C -0.22 -3.95 10.02 -39.48 -0.40 -4.35 16 15 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 16 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 17 C -0.24 -5.28 9.11 -39.36 -0.36 -5.64 16 18 C 0.16 3.52 6.66 -38.94 -0.26 3.26 16 19 O -0.21 -5.07 8.01 0.06 0.00 -5.07 16 20 C -0.39 -10.37 9.90 30.88 0.31 -10.06 16 21 H 0.11 2.98 5.52 -52.49 -0.29 2.69 16 22 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 23 N -0.87 -24.21 13.96 55.48 0.77 -23.44 16 24 Si 0.90 19.99 28.62 -169.99 -4.86 15.12 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 28 H 0.04 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 7.18 -51.93 -0.37 0.06 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.40 3.79 7.67 -40.82 -0.31 3.48 16 39 H 0.41 6.30 8.38 -40.82 -0.34 5.95 16 40 H 0.16 2.87 5.52 -52.49 -0.29 2.58 16 41 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.15 3.37 5.71 -52.49 -0.30 3.08 16 43 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -30.29 365.92 -6.25 -36.54 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.68 Total: 10.29 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.33 Total: -1.60 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.36 Total: -43.64 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.29 Total: -19.38 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.86 Total: 15.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.29 -6.25 -36.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178160623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.063 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds