Wall clock time and date at job start Tue Mar 31 2020 15:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00387 * 2 1 4 4 C 1.52998 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47105 * 304.99329 * 4 3 2 6 6 C 1.52998 * 109.47355 * 64.99590 * 4 3 2 7 7 C 1.53004 * 109.46982 * 185.00071 * 4 3 2 8 8 N 1.46497 * 109.46845 * 175.00132 * 7 4 3 9 9 C 1.34779 * 119.99887 * 180.02562 * 8 7 4 10 10 O 1.21592 * 119.99915 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00173 * 179.97438 * 9 8 7 12 12 C 1.40132 * 119.99892 * 183.91963 * 11 9 8 13 13 C 1.38694 * 120.07584 * 334.47402 * 12 11 9 14 14 C 1.38201 * 120.01860 * 179.97438 * 13 12 11 15 15 C 1.38542 * 120.17921 * 359.97438 * 14 13 12 16 16 F 1.35096 * 119.92416 * 180.02562 * 15 14 13 17 17 C 1.38339 * 120.14754 * 0.04997 * 15 14 13 18 18 C 1.38741 * 119.98278 * 359.93200 * 17 15 14 19 19 O 1.35772 * 120.09139 * 180.32332 * 18 17 15 20 20 C 1.34801 * 117.00171 * 354.37025 * 19 18 17 21 21 H 1.08000 * 119.99963 * 354.63993 * 20 19 18 22 22 C 1.38630 * 120.00489 * 174.62884 * 20 19 18 23 23 N 1.31571 * 120.00520 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99837 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46995 * 89.99986 * 24 22 20 26 26 H 1.48496 * 109.47429 * 209.99626 * 24 22 20 27 27 H 1.48499 * 109.47103 * 330.00157 * 24 22 20 28 28 H 1.09009 * 109.47002 * 60.00693 * 1 2 3 29 29 H 1.09005 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47673 * 300.00586 * 1 2 3 31 31 H 1.09004 * 109.47305 * 59.99442 * 3 2 1 32 32 H 1.09003 * 109.46881 * 299.99699 * 3 2 1 33 33 H 1.08996 * 109.47222 * 300.00162 * 6 4 3 34 34 H 1.09002 * 109.46829 * 60.00077 * 6 4 3 35 35 H 1.08997 * 109.47109 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.47352 * 54.99526 * 7 4 3 37 37 H 1.09004 * 109.46764 * 294.99172 * 7 4 3 38 38 H 0.97000 * 120.00220 * 359.97438 * 8 7 4 39 39 H 0.97004 * 119.99984 * 3.91592 * 11 9 8 40 40 H 1.08000 * 119.98864 * 359.97438 * 13 12 11 41 41 H 1.08006 * 119.90812 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.01276 * 180.02562 * 17 15 14 43 43 H 0.96999 * 120.00175 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8428 6 6 3.9963 0.5363 -1.3063 7 6 4.1573 2.5769 0.1264 8 7 5.6120 2.4528 0.2470 9 6 6.3745 3.5573 0.3708 10 8 5.8550 4.6566 0.3819 11 7 7.7128 3.4432 0.4824 12 6 8.4981 4.5845 0.6934 13 6 8.0441 5.8272 0.2775 14 6 8.8193 6.9521 0.4867 15 6 10.0506 6.8428 1.1122 16 9 10.8040 7.9458 1.3146 17 6 10.5107 5.6067 1.5295 18 6 9.7376 4.4733 1.3230 19 8 10.1841 3.2599 1.7375 20 6 11.4350 3.2060 2.2370 21 1 12.0640 4.0836 2.2138 22 6 11.9140 2.0242 2.7807 23 7 13.1347 1.9717 3.2687 24 14 10.8262 0.5061 2.8206 25 1 11.0239 -0.2773 1.5745 26 1 11.1864 -0.3304 3.9934 27 1 9.4037 0.9190 2.9252 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.5533 -0.4556 -1.3958 34 1 3.6810 1.1524 -2.1484 35 1 5.0829 0.4506 -1.3060 36 1 3.7602 3.0736 1.0116 37 1 3.9150 3.1643 -0.7593 38 1 6.0264 1.5759 0.2386 39 1 8.1324 2.5711 0.4166 40 1 7.0844 5.9160 -0.2100 41 1 8.4638 7.9190 0.1625 42 1 11.4708 5.5241 2.0172 43 1 13.4700 1.1446 3.6488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178160623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:48 Heat of formation + Delta-G solvation = -139.673351 kcal Electronic energy + Delta-G solvation = -27234.862938 eV Core-core repulsion = 23002.088208 eV Total energy + Delta-G solvation = -4232.774730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.83201 -41.86009 -40.57592 -39.24431 -38.23822 -36.93461 -35.63109 -34.46482 -33.80522 -31.19129 -30.06567 -28.23307 -27.59178 -27.24500 -25.84601 -24.06968 -23.20853 -22.00440 -21.47740 -20.14746 -19.79819 -19.24441 -18.46179 -17.47259 -17.26281 -17.05757 -16.84299 -16.69830 -16.49491 -16.29652 -15.87825 -15.69571 -15.65296 -15.43021 -15.18624 -15.08935 -14.86249 -14.25868 -13.97821 -13.87829 -13.63348 -13.59858 -13.28699 -13.07542 -12.60203 -12.45202 -12.42071 -12.18447 -12.06845 -12.01366 -11.67860 -11.65838 -11.39261 -10.98572 -10.91709 -10.58993 -10.17287 -9.59244 -8.75169 -8.50983 -6.25098 0.19271 0.41922 1.34092 1.39008 1.50279 1.53388 2.01196 2.26981 2.66213 2.75434 2.81658 3.01593 3.22436 3.40081 3.84762 3.85456 3.93361 4.05501 4.15936 4.29985 4.44233 4.47180 4.48870 4.52852 4.60061 4.67235 4.76381 4.88533 4.90531 4.92018 5.01320 5.10354 5.17603 5.20773 5.30378 5.38528 5.47003 5.49055 5.60118 5.83054 5.91245 6.10983 6.24100 6.80811 6.90658 7.38504 7.47823 8.60052 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003207 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.153434 B = 8728.173712 C =11034.900078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.068 3.932 4 C -0.095 4.095 5 H 0.084 0.916 6 C -0.143 4.143 7 C 0.148 3.852 8 N -0.727 5.727 9 C 0.704 3.296 10 O -0.605 6.605 11 N -0.666 5.666 12 C 0.094 3.906 13 C -0.066 4.066 14 C -0.190 4.190 15 C 0.112 3.888 16 F -0.147 7.147 17 C -0.254 4.254 18 C 0.135 3.865 19 O -0.221 6.221 20 C -0.400 4.400 21 H 0.079 0.921 22 C 0.012 3.988 23 N -0.921 5.921 24 Si 0.972 3.028 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.252 1.252 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.410 0.590 39 H 0.416 0.584 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.126 0.874 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.219 -3.697 -8.855 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.009 4.009 4 C -0.114 4.114 5 H 0.103 0.897 6 C -0.200 4.200 7 C 0.024 3.976 8 N -0.384 5.384 9 C 0.405 3.595 10 O -0.486 6.486 11 N -0.313 5.313 12 C -0.002 4.002 13 C -0.086 4.086 14 C -0.210 4.210 15 C 0.092 3.908 16 F -0.126 7.126 17 C -0.275 4.275 18 C 0.082 3.918 19 O -0.128 6.128 20 C -0.476 4.476 21 H 0.096 0.904 22 C -0.187 4.187 23 N -0.560 5.560 24 Si 0.793 3.207 25 H -0.182 1.182 26 H -0.202 1.202 27 H -0.176 1.176 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.246 0.754 39 H 0.252 0.748 40 H 0.189 0.811 41 H 0.177 0.823 42 H 0.144 0.856 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.562 -3.250 -8.736 25.339 hybrid contribution 1.016 -0.728 0.546 1.364 sum -22.546 -3.978 -8.189 24.315 Atomic orbital electron populations 1.22905 0.79598 1.03688 1.00829 1.87820 1.21233 1.28385 1.95609 1.22456 0.92327 0.84683 1.01471 1.21226 0.94172 0.95363 1.00616 0.89718 1.21780 1.01269 1.01099 0.95862 1.21163 0.77256 0.96782 1.02380 1.44966 1.07544 1.07484 1.78375 1.15919 0.80620 0.85101 0.77840 1.90781 1.72873 1.25784 1.59123 1.42213 1.04956 1.09623 1.74469 1.16870 0.90186 0.88446 1.04673 1.21319 1.00717 0.88829 0.97766 1.20997 0.93244 1.01035 1.05725 1.17529 0.91003 0.81537 1.00705 1.91425 1.76095 1.51736 1.93357 1.20947 1.03699 0.91704 1.11125 1.18737 0.92952 0.85322 0.94768 1.83456 1.31544 1.25808 1.71945 1.20631 0.86549 1.00505 1.39954 0.90389 1.25337 0.97400 1.01607 0.94368 1.69744 1.17217 1.29858 1.39203 0.85201 0.79485 0.77268 0.78751 1.18153 1.20167 1.17570 0.93105 0.88765 0.93368 0.92314 0.91855 0.91975 0.92204 0.92222 0.91705 0.90935 0.75355 0.74787 0.81103 0.82285 0.85626 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.39 10.24 -148.98 -1.53 -7.92 16 3 C 0.07 0.86 5.32 71.98 0.38 1.24 16 4 C -0.09 -1.28 2.66 -10.79 -0.03 -1.31 16 5 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 6 C -0.14 -1.87 8.96 71.98 0.65 -1.22 16 7 C 0.15 2.50 5.06 86.38 0.44 2.94 16 8 N -0.73 -14.89 5.29 -478.52 -2.53 -17.42 16 9 C 0.70 20.46 8.45 179.05 1.51 21.98 16 10 O -0.61 -20.59 13.26 -4.00 -0.05 -20.64 16 11 N -0.67 -21.16 5.29 -316.69 -1.67 -22.83 16 12 C 0.09 3.57 6.48 38.22 0.25 3.81 16 13 C -0.07 -2.28 8.79 22.37 0.20 -2.08 16 14 C -0.19 -6.36 10.02 22.33 0.22 -6.14 16 15 C 0.11 4.36 7.29 22.37 0.16 4.52 16 16 F -0.15 -5.58 17.26 44.97 0.78 -4.80 16 17 C -0.25 -11.31 9.11 22.41 0.20 -11.11 16 18 C 0.13 5.96 6.66 22.69 0.15 6.11 16 19 O -0.22 -10.78 8.01 -22.70 -0.18 -10.96 16 20 C -0.40 -22.15 9.90 67.91 0.67 -21.48 16 21 H 0.08 4.64 5.52 -2.91 -0.02 4.63 16 22 C 0.01 0.65 5.49 84.83 0.47 1.12 16 23 N -0.92 -52.95 13.96 21.61 0.30 -52.65 16 24 Si 0.97 41.21 28.62 68.60 1.96 43.17 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 26 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 28 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.88 7.82 -2.39 -0.02 0.86 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.75 7.18 -2.39 -0.02 0.73 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.41 6.66 7.67 -92.71 -0.71 5.95 16 39 H 0.42 12.04 8.38 -92.71 -0.78 11.26 16 40 H 0.17 5.65 5.52 -2.91 -0.02 5.64 16 41 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.13 6.14 5.71 -2.91 -0.02 6.12 16 43 H 0.29 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -66.18 365.92 3.18 -63.00 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.42 Total: 31.16 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.52 Total: -0.11 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -3.90 Total: -92.90 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.76 Total: -39.52 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.78 Total: -4.80 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.96 Total: 43.17 kcal Total: -66.18 3.18 -63.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178160623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.669 kcal (2) G-P(sol) polarization free energy of solvation -66.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds