Wall clock time and date at job start Tue Mar 31 2020 14:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46938 * 111.78834 * 3 2 1 5 5 C 1.36876 * 120.00176 * 97.24093 * 4 3 2 6 6 H 1.07996 * 120.00213 * 217.31587 * 5 4 3 7 7 C 1.39051 * 119.99686 * 37.31321 * 5 4 3 8 8 N 1.31357 * 120.00234 * 17.63880 * 7 5 4 9 9 Si 1.86801 * 119.99797 * 197.63664 * 7 5 4 10 10 H 1.48495 * 109.47285 * 60.00077 * 9 7 5 11 11 H 1.48500 * 109.47161 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46913 * 299.99875 * 9 7 5 13 13 C 1.34777 * 120.00073 * 277.51151 * 4 3 2 14 14 O 1.21594 * 119.99809 * 3.62246 * 13 4 3 15 15 C 1.47742 * 120.00272 * 183.62092 * 13 4 3 16 16 C 1.39692 * 120.11639 * 24.85010 * 15 13 4 17 17 C 1.37952 * 119.98899 * 179.72539 * 16 15 13 18 18 C 1.38271 * 120.22984 * 0.54962 * 17 16 15 19 19 C 1.38970 * 120.23465 * 359.72791 * 18 17 16 20 20 N 1.39956 * 119.99748 * 180.02562 * 19 18 17 21 21 C 1.34776 * 119.99902 * 211.75578 * 20 19 18 22 22 O 1.21292 * 120.00035 * 5.32741 * 21 20 19 23 23 C 1.50699 * 119.99834 * 185.31839 * 21 20 19 24 24 H 1.08993 * 115.54961 * 34.42190 * 23 21 20 25 25 C 1.52998 * 117.50205 * 248.74795 * 23 21 20 26 26 C 1.53003 * 117.49717 * 180.08730 * 23 21 20 27 27 H 1.08999 * 117.49782 * 214.98189 * 26 23 21 28 28 C 1.53000 * 117.49825 * 0.02562 * 26 23 21 29 29 C 1.38609 * 120.00639 * 359.97438 * 19 18 17 30 30 H 4.40631 * 5.51472 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47087 * 351.78795 * 3 2 1 32 32 H 1.09004 * 109.46352 * 231.78746 * 3 2 1 33 33 H 0.97001 * 120.00315 * 179.97438 * 8 7 5 34 34 H 1.08007 * 120.00362 * 359.97438 * 16 15 13 35 35 H 1.08008 * 119.88869 * 180.25833 * 17 16 15 36 36 H 1.08006 * 119.88380 * 179.70406 * 18 17 16 37 37 H 0.96999 * 119.99925 * 31.75061 * 20 19 18 38 38 H 1.09004 * 117.49695 * 0.02562 * 25 23 21 39 39 H 1.08997 * 117.50110 * 144.99745 * 25 23 21 40 40 H 1.09002 * 109.47033 * 60.00066 * 28 26 23 41 41 H 1.09005 * 109.46993 * 180.02562 * 28 26 23 42 42 H 1.08995 * 109.47256 * 300.00110 * 28 26 23 43 43 H 1.08007 * 120.11643 * 179.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.5135 -1.2825 5 6 3.5025 1.8266 -1.3990 6 1 3.2881 2.3691 -2.3079 7 6 4.1528 2.4622 -0.3470 8 7 4.7202 1.7507 0.6003 9 14 4.2197 4.3278 -0.2809 10 1 2.8387 4.8712 -0.2296 11 1 4.9651 4.7538 0.9308 12 1 4.9092 4.8416 -1.4917 13 6 3.2152 -0.3062 -2.3492 14 8 2.8219 -1.4537 -2.2654 15 6 3.7821 0.1894 -3.6204 16 6 4.6802 1.2593 -3.6174 17 6 5.2123 1.7162 -4.8053 18 6 4.8511 1.1261 -6.0025 19 6 3.9539 0.0649 -6.0170 20 7 3.5922 -0.5290 -7.2316 21 6 2.3594 -1.0515 -7.3854 22 8 1.5320 -0.9220 -6.5080 23 6 2.0089 -1.7963 -8.6477 24 1 2.8195 -2.3717 -9.0945 25 6 0.9992 -1.1451 -9.5950 26 6 0.5927 -2.3639 -8.7629 27 1 0.4717 -3.3125 -9.2859 28 6 -0.3593 -2.1313 -7.5880 29 6 3.4181 -0.4061 -4.8286 30 1 -1.0500 0.0001 0.0001 31 1 3.0098 -1.0162 0.1468 32 1 3.0090 0.6366 0.8075 33 1 5.1742 2.1940 1.3340 34 1 4.9611 1.7260 -2.6848 35 1 5.9098 2.5409 -4.8008 36 1 5.2674 1.4915 -6.9297 37 1 4.2288 -0.5646 -7.9626 38 1 0.5888 -0.1777 -9.3054 39 1 1.1457 -1.2920 -10.6651 40 1 -0.4900 -1.0604 -7.4327 41 1 -1.3248 -2.5876 -7.8068 42 1 0.0587 -2.5807 -6.6872 43 1 2.7204 -1.2304 -4.8378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281526114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:50 Heat of formation + Delta-G solvation = 58.178351 kcal Electronic energy + Delta-G solvation = -27179.434268 eV Core-core repulsion = 23386.008256 eV Total energy + Delta-G solvation = -3793.426012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58783 -39.23363 -37.88065 -36.47712 -35.12579 -34.48763 -32.50785 -31.43185 -30.37311 -29.62204 -28.38701 -26.60955 -25.07651 -24.59006 -22.66970 -21.92042 -21.05243 -19.84745 -19.47928 -18.27533 -17.46680 -17.21791 -16.31853 -15.72704 -15.60034 -15.16124 -15.11427 -14.60438 -14.42004 -14.03886 -14.01662 -13.47635 -13.17664 -13.11669 -12.83711 -12.62726 -12.57889 -12.34955 -12.07814 -11.95066 -11.67298 -11.63557 -11.33250 -11.11241 -10.93426 -10.67629 -10.52715 -10.45029 -10.24850 -9.96971 -9.68189 -9.46867 -9.37810 -8.96849 -8.56527 -8.29753 -7.75967 -7.60576 -6.53980 -4.18962 1.57095 1.86595 2.58848 3.05910 3.06585 3.15146 3.18236 3.52220 3.60084 3.77336 3.82870 4.03747 4.40926 4.54175 4.57562 4.63718 4.82277 4.90175 4.97904 5.21443 5.38279 5.41943 5.43762 5.46359 5.61084 5.74263 5.91462 5.94227 6.02219 6.04383 6.07850 6.14368 6.46575 6.52509 6.63991 6.68473 6.81798 6.88771 7.01993 7.09247 7.27558 7.32822 7.51715 7.57756 7.73532 8.24256 8.25090 8.51155 8.90836 9.34935 9.79070 10.48688 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.003729 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.070220 B = 7507.248349 C = 8691.306589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.154 4.154 3 C 0.211 3.789 4 N -0.428 5.428 5 C -0.336 4.336 6 H 0.099 0.901 7 C 0.041 3.959 8 N -0.858 5.858 9 Si 0.916 3.084 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.513 3.487 14 O -0.592 6.592 15 C -0.081 4.081 16 C -0.089 4.089 17 C -0.126 4.126 18 C -0.139 4.139 19 C 0.115 3.885 20 N -0.668 5.668 21 C 0.535 3.465 22 O -0.505 6.505 23 C -0.193 4.193 24 H 0.124 0.876 25 C -0.153 4.153 26 C -0.115 4.115 27 H 0.111 0.889 28 C -0.116 4.116 29 C -0.077 4.077 30 H 0.207 0.793 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.275 0.725 34 H 0.175 0.825 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.406 0.594 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -1.468 -16.164 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.155 4.155 3 C 0.088 3.912 4 N -0.145 5.145 5 C -0.464 4.464 6 H 0.116 0.884 7 C -0.165 4.165 8 N -0.494 5.494 9 Si 0.741 3.259 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.303 3.697 14 O -0.477 6.477 15 C -0.085 4.085 16 C -0.107 4.107 17 C -0.145 4.145 18 C -0.159 4.159 19 C 0.023 3.977 20 N -0.313 5.313 21 C 0.322 3.678 22 O -0.379 6.379 23 C -0.215 4.215 24 H 0.142 0.858 25 C -0.190 4.190 26 C -0.134 4.134 27 H 0.129 0.871 28 C -0.173 4.173 29 C -0.098 4.098 30 H 0.224 0.776 31 H 0.098 0.902 32 H 0.150 0.850 33 H 0.086 0.914 34 H 0.192 0.808 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.241 0.759 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.212 -1.944 -15.280 15.451 hybrid contribution 0.318 0.991 -0.425 1.124 sum -0.894 -0.953 -15.705 15.759 Atomic orbital electron populations 1.24587 0.95639 1.04511 1.02651 1.24354 0.95514 0.97288 0.98391 1.18552 0.81518 1.00829 0.90258 1.43189 1.54505 1.09233 1.07558 1.19582 1.36669 0.85917 1.04232 0.88395 1.25417 0.94406 1.00360 0.96325 1.69800 1.30761 1.36452 1.12371 0.86158 0.78925 0.82484 0.78299 1.19593 1.20621 1.19232 1.18289 0.81621 0.84994 0.84799 1.90637 1.53435 1.18851 1.84806 1.19890 0.98534 0.96868 0.93204 1.22747 0.93410 0.94086 1.00471 1.20966 1.00890 1.00638 0.92001 1.20856 1.00797 0.95659 0.98626 1.17474 0.99881 0.95486 0.84900 1.43385 1.14899 1.58539 1.14456 1.19810 0.81430 0.78670 0.87853 1.90797 1.47659 1.56767 1.42716 1.22265 0.95958 1.05576 0.97657 0.85824 1.23113 1.00810 0.98319 0.96766 1.22399 0.93245 0.97657 1.00074 0.87083 1.21408 0.96607 1.02904 0.96363 1.21182 0.99407 0.99660 0.89586 0.77608 0.90215 0.85046 0.91408 0.80839 0.85917 0.86568 0.75896 0.88153 0.87857 0.91638 0.93200 0.90984 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.40 19.25 29.55 0.57 -4.84 16 2 C -0.15 -3.70 13.54 -37.12 -0.50 -4.20 16 3 C 0.21 5.25 5.30 -6.83 -0.04 5.22 16 4 N -0.43 -11.06 2.51 -119.05 -0.30 -11.36 16 5 C -0.34 -8.32 6.03 -15.00 -0.09 -8.41 16 6 H 0.10 2.38 6.21 -52.49 -0.33 2.05 16 7 C 0.04 0.99 4.90 -17.45 -0.09 0.90 16 8 N -0.86 -21.25 11.31 55.50 0.63 -20.62 16 9 Si 0.92 18.57 29.59 -169.99 -5.03 13.54 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 13 C 0.51 13.50 7.37 -12.38 -0.09 13.41 16 14 O -0.59 -16.92 16.31 5.28 0.09 -16.83 16 15 C -0.08 -1.87 5.59 -104.99 -0.59 -2.46 16 16 C -0.09 -1.81 7.80 -39.14 -0.31 -2.11 16 17 C -0.13 -2.09 10.02 -39.67 -0.40 -2.49 16 18 C -0.14 -2.09 9.95 -39.30 -0.39 -2.48 16 19 C 0.12 1.95 6.30 -83.74 -0.53 1.42 16 20 N -0.67 -8.80 5.35 -9.89 -0.05 -8.85 16 21 C 0.54 7.65 7.34 -10.99 -0.08 7.57 16 22 O -0.51 -9.43 10.69 5.55 0.06 -9.37 16 23 C -0.19 -1.93 6.19 -91.77 -0.57 -2.50 16 24 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 25 C -0.15 -1.30 9.88 -26.69 -0.26 -1.56 16 26 C -0.12 -1.14 6.41 -90.58 -0.58 -1.72 16 27 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 28 C -0.12 -1.44 8.43 37.16 0.31 -1.13 16 29 C -0.08 -1.64 8.20 -38.96 -0.32 -1.96 16 30 H 0.21 3.39 7.80 -54.09 -0.42 2.97 16 31 H 0.08 2.00 7.71 -51.93 -0.40 1.60 16 32 H 0.13 3.30 5.46 -51.93 -0.28 3.02 16 33 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.17 3.80 5.01 -52.48 -0.26 3.54 16 35 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.41 3.66 8.81 -40.82 -0.36 3.30 16 38 H 0.10 0.96 8.05 -51.93 -0.42 0.55 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.92 7.02 -51.93 -0.36 0.56 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 1.07 7.25 -51.93 -0.38 0.70 16 43 H 0.14 3.21 6.09 -52.48 -0.32 2.89 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -31.74 366.02 -8.24 -39.98 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -5.20 Total: 15.33 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.95 Total: -7.34 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.28 Total: -40.83 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.15 Total: -26.20 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.74 -8.24 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281526114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.160 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds