Wall clock time and date at job start Tue Mar 31 2020 14:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46938 * 111.78834 * 3 2 1 5 5 C 1.36876 * 120.00176 * 97.24093 * 4 3 2 6 6 H 1.07996 * 120.00213 * 217.31587 * 5 4 3 7 7 C 1.39051 * 119.99686 * 37.31321 * 5 4 3 8 8 N 1.31357 * 120.00234 * 17.63880 * 7 5 4 9 9 Si 1.86801 * 119.99797 * 197.63664 * 7 5 4 10 10 H 1.48495 * 109.47285 * 60.00077 * 9 7 5 11 11 H 1.48500 * 109.47161 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46913 * 299.99875 * 9 7 5 13 13 C 1.34777 * 120.00073 * 277.51151 * 4 3 2 14 14 O 1.21594 * 119.99809 * 3.62246 * 13 4 3 15 15 C 1.47742 * 120.00272 * 183.62092 * 13 4 3 16 16 C 1.39692 * 120.11639 * 24.85010 * 15 13 4 17 17 C 1.37952 * 119.98899 * 179.72539 * 16 15 13 18 18 C 1.38271 * 120.22984 * 0.54962 * 17 16 15 19 19 C 1.38970 * 120.23465 * 359.72791 * 18 17 16 20 20 N 1.39956 * 119.99748 * 180.02562 * 19 18 17 21 21 C 1.34776 * 119.99902 * 211.75578 * 20 19 18 22 22 O 1.21292 * 120.00035 * 5.32741 * 21 20 19 23 23 C 1.50699 * 119.99834 * 185.31839 * 21 20 19 24 24 H 1.08993 * 115.54961 * 34.42190 * 23 21 20 25 25 C 1.52998 * 117.50205 * 248.74795 * 23 21 20 26 26 C 1.53003 * 117.49717 * 180.08730 * 23 21 20 27 27 H 1.08999 * 117.49782 * 214.98189 * 26 23 21 28 28 C 1.53000 * 117.49825 * 0.02562 * 26 23 21 29 29 C 1.38609 * 120.00639 * 359.97438 * 19 18 17 30 30 H 4.40631 * 5.51472 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47087 * 351.78795 * 3 2 1 32 32 H 1.09004 * 109.46352 * 231.78746 * 3 2 1 33 33 H 0.97001 * 120.00315 * 179.97438 * 8 7 5 34 34 H 1.08007 * 120.00362 * 359.97438 * 16 15 13 35 35 H 1.08008 * 119.88869 * 180.25833 * 17 16 15 36 36 H 1.08006 * 119.88380 * 179.70406 * 18 17 16 37 37 H 0.96999 * 119.99925 * 31.75061 * 20 19 18 38 38 H 1.09004 * 117.49695 * 0.02562 * 25 23 21 39 39 H 1.08997 * 117.50110 * 144.99745 * 25 23 21 40 40 H 1.09002 * 109.47033 * 60.00066 * 28 26 23 41 41 H 1.09005 * 109.46993 * 180.02562 * 28 26 23 42 42 H 1.08995 * 109.47256 * 300.00110 * 28 26 23 43 43 H 1.08007 * 120.11643 * 179.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.5135 -1.2825 5 6 3.5025 1.8266 -1.3990 6 1 3.2881 2.3691 -2.3079 7 6 4.1528 2.4622 -0.3470 8 7 4.7202 1.7507 0.6003 9 14 4.2197 4.3278 -0.2809 10 1 2.8387 4.8712 -0.2296 11 1 4.9651 4.7538 0.9308 12 1 4.9092 4.8416 -1.4917 13 6 3.2152 -0.3062 -2.3492 14 8 2.8219 -1.4537 -2.2654 15 6 3.7821 0.1894 -3.6204 16 6 4.6802 1.2593 -3.6174 17 6 5.2123 1.7162 -4.8053 18 6 4.8511 1.1261 -6.0025 19 6 3.9539 0.0649 -6.0170 20 7 3.5922 -0.5290 -7.2316 21 6 2.3594 -1.0515 -7.3854 22 8 1.5320 -0.9220 -6.5080 23 6 2.0089 -1.7963 -8.6477 24 1 2.8195 -2.3717 -9.0945 25 6 0.9992 -1.1451 -9.5950 26 6 0.5927 -2.3639 -8.7629 27 1 0.4717 -3.3125 -9.2859 28 6 -0.3593 -2.1313 -7.5880 29 6 3.4181 -0.4061 -4.8286 30 1 -1.0500 0.0001 0.0001 31 1 3.0098 -1.0162 0.1468 32 1 3.0090 0.6366 0.8075 33 1 5.1742 2.1940 1.3340 34 1 4.9611 1.7260 -2.6848 35 1 5.9098 2.5409 -4.8008 36 1 5.2674 1.4915 -6.9297 37 1 4.2288 -0.5646 -7.9626 38 1 0.5888 -0.1777 -9.3054 39 1 1.1457 -1.2920 -10.6651 40 1 -0.4900 -1.0604 -7.4327 41 1 -1.3248 -2.5876 -7.8068 42 1 0.0587 -2.5807 -6.6872 43 1 2.7204 -1.2304 -4.8378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281526114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:49 Heat of formation + Delta-G solvation = 38.891546 kcal Electronic energy + Delta-G solvation = -27180.270607 eV Core-core repulsion = 23386.008256 eV Total energy + Delta-G solvation = -3794.262350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79938 -40.90259 -39.31019 -37.53474 -37.11464 -35.78972 -34.34049 -33.31486 -31.91098 -30.97749 -29.43776 -28.41740 -26.97515 -25.64305 -24.25572 -23.11296 -21.99660 -21.37171 -20.83992 -20.03779 -19.11162 -18.25680 -17.97503 -17.26034 -16.88066 -16.84102 -16.44096 -16.06771 -16.00446 -15.79068 -15.23982 -14.97589 -14.70249 -14.37952 -14.35849 -14.11149 -13.97732 -13.65851 -13.52760 -13.42348 -13.22165 -13.00337 -12.81734 -12.50062 -12.39607 -12.27454 -12.12052 -11.54558 -11.38165 -11.27896 -11.23324 -11.02283 -10.87247 -10.59550 -10.48975 -9.85024 -9.66352 -9.01649 -8.39838 -6.12472 0.07724 0.42291 1.43009 1.48193 1.50483 1.57631 1.69170 1.93194 2.01550 2.06322 2.31745 2.78885 2.89604 3.00600 3.14302 3.58401 3.68987 3.77042 3.90610 4.05581 4.07416 4.18138 4.33666 4.45675 4.55054 4.60960 4.62500 4.70839 4.78326 4.89439 4.91306 5.00294 5.02053 5.06314 5.09400 5.16759 5.29664 5.36147 5.46083 5.55050 5.61412 5.75915 5.80180 6.12821 6.33206 6.47202 6.69784 6.99547 7.20267 7.38646 7.84295 8.64710 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.003729 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.070220 B = 7507.248349 C = 8691.306589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.223 4.223 3 C 0.214 3.786 4 N -0.432 5.432 5 C -0.352 4.352 6 H 0.100 0.900 7 C 0.009 3.991 8 N -0.886 5.886 9 Si 0.983 3.017 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.247 1.247 13 C 0.491 3.509 14 O -0.637 6.637 15 C -0.115 4.115 16 C -0.102 4.102 17 C -0.113 4.113 18 C -0.113 4.113 19 C 0.123 3.877 20 N -0.653 5.653 21 C 0.524 3.476 22 O -0.558 6.558 23 C -0.194 4.194 24 H 0.161 0.839 25 C -0.128 4.128 26 C -0.128 4.128 27 H 0.141 0.859 28 C -0.113 4.113 29 C -0.100 4.100 30 H 0.256 0.744 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.280 0.720 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.431 0.569 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 0.632 -20.159 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.224 4.224 3 C 0.091 3.909 4 N -0.148 5.148 5 C -0.479 4.479 6 H 0.117 0.883 7 C -0.195 4.195 8 N -0.523 5.523 9 Si 0.805 3.195 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.171 1.171 13 C 0.282 3.718 14 O -0.526 6.526 15 C -0.118 4.118 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.133 4.133 19 C 0.029 3.971 20 N -0.300 5.300 21 C 0.314 3.686 22 O -0.436 6.436 23 C -0.215 4.215 24 H 0.179 0.821 25 C -0.166 4.166 26 C -0.146 4.146 27 H 0.159 0.841 28 C -0.170 4.170 29 C -0.122 4.122 30 H 0.272 0.728 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.090 0.910 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.270 0.730 38 H 0.103 0.897 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.287 0.163 -19.312 19.315 hybrid contribution -0.024 0.298 0.805 0.859 sum -0.312 0.461 -18.508 18.516 Atomic orbital electron populations 1.25651 0.96531 1.01144 0.99455 1.24482 0.96148 1.00385 1.01393 1.18339 0.82937 0.99471 0.90110 1.43427 1.54008 1.09767 1.07582 1.19783 1.37654 0.85449 1.05006 0.88255 1.26223 0.93286 1.04629 0.95332 1.69892 1.31094 1.38388 1.12878 0.85143 0.78610 0.76685 0.79091 1.20160 1.20172 1.17100 1.19061 0.81603 0.84686 0.86410 1.90560 1.55686 1.20573 1.85813 1.19752 1.00852 0.99205 0.92034 1.22537 0.94013 0.93904 1.01668 1.21373 1.00143 1.00841 0.90752 1.21371 0.98340 0.93331 1.00273 1.17573 0.99115 0.95610 0.84806 1.43317 1.15257 1.57675 1.13728 1.20750 0.81026 0.78082 0.88756 1.90805 1.49334 1.58501 1.44919 1.22358 0.97192 1.05924 0.95980 0.82105 1.23214 0.98344 0.96721 0.98275 1.22506 0.92488 0.99957 0.99668 0.84139 1.21293 0.98307 1.00956 0.96469 1.20980 1.00358 0.99686 0.91149 0.72799 0.92226 0.85724 0.90988 0.82721 0.81895 0.80965 0.72955 0.89704 0.83956 0.94133 0.91479 0.94656 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.91 19.25 74.32 1.43 -7.48 16 2 C -0.22 -11.27 13.54 31.13 0.42 -10.84 16 3 C 0.21 11.57 5.30 84.58 0.45 12.02 16 4 N -0.43 -24.05 2.51 -648.83 -1.63 -25.68 16 5 C -0.35 -18.22 6.03 84.10 0.51 -17.71 16 6 H 0.10 5.01 6.21 -2.91 -0.02 4.99 16 7 C 0.01 0.45 4.90 84.96 0.42 0.87 16 8 N -0.89 -45.54 11.31 21.68 0.25 -45.30 16 9 Si 0.98 37.91 29.59 68.60 2.03 39.94 16 10 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 12 H -0.25 -8.71 7.11 99.48 0.71 -8.01 16 13 C 0.49 28.15 7.37 86.76 0.64 28.79 16 14 O -0.64 -40.17 16.31 -4.01 -0.07 -40.23 16 15 C -0.12 -5.62 5.59 -20.10 -0.11 -5.74 16 16 C -0.10 -4.25 7.80 22.55 0.18 -4.07 16 17 C -0.11 -3.40 10.02 22.21 0.22 -3.18 16 18 C -0.11 -2.95 9.95 22.45 0.22 -2.73 16 19 C 0.12 4.02 6.30 38.11 0.24 4.26 16 20 N -0.65 -15.84 5.35 -303.60 -1.62 -17.46 16 21 C 0.52 14.76 7.34 87.66 0.64 15.40 16 22 O -0.56 -22.13 10.69 -3.07 -0.03 -22.17 16 23 C -0.19 -3.36 6.19 -11.54 -0.07 -3.43 16 24 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 25 C -0.13 -1.75 9.88 30.62 0.30 -1.45 16 26 C -0.13 -2.28 6.41 -10.77 -0.07 -2.35 16 27 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 28 C -0.11 -2.95 8.43 71.98 0.61 -2.34 16 29 C -0.10 -4.49 8.20 22.67 0.19 -4.30 16 30 H 0.26 7.73 7.80 -4.42 -0.03 7.69 16 31 H 0.06 3.33 7.71 -2.39 -0.02 3.31 16 32 H 0.13 6.76 5.46 -2.38 -0.01 6.75 16 33 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 34 H 0.16 6.99 5.01 -2.91 -0.01 6.97 16 35 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.43 5.97 8.81 -92.71 -0.82 5.15 16 38 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 39 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.04 1.22 7.02 -2.39 -0.02 1.20 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.03 1.15 7.25 -2.39 -0.02 1.13 16 43 H 0.10 5.24 6.09 -2.91 -0.02 5.22 16 Total: -1.00 -80.11 366.02 5.38 -74.74 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: 0.24 Total: 40.44 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 6.21 Total: -4.28 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -3.01 Total: -88.43 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.10 Total: -62.40 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -80.11 5.38 -74.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281526114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.627 kcal (2) G-P(sol) polarization free energy of solvation -80.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds