Wall clock time and date at job start Tue Mar 31 2020 14:22:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52996 * 109.47460 * 2 1
4 4 O 1.42907 * 109.47191 * 240.00272 * 2 1 3
5 5 C 1.35495 * 116.99810 * 269.99998 * 4 2 1
6 6 C 1.39146 * 119.51665 * 179.97438 * 5 4 2
7 7 C 1.36958 * 119.39917 * 179.97438 * 6 5 4
8 8 C 1.40281 * 118.47311 * 0.02562 * 7 6 5
9 9 C 1.47568 * 120.50028 * 180.02562 * 8 7 6
10 10 O 1.21585 * 119.99929 * 359.97438 * 9 8 7
11 11 N 1.34777 * 119.99883 * 179.97438 * 9 8 7
12 12 C 1.39020 * 119.99730 * 175.80314 * 11 9 8
13 13 C 1.38672 * 120.28730 * 34.55211 * 12 11 9
14 14 C 1.38203 * 120.03305 * 180.02562 * 13 12 11
15 15 C 1.38885 * 120.61861 * 0.02562 * 14 13 12
16 16 C 1.36457 * 120.57964 * 359.97438 * 15 14 13
17 17 C 1.40733 * 119.94883 * 359.68446 * 16 15 14
18 18 C 1.41049 * 120.30568 * 180.31678 * 17 16 15
19 19 H 1.07999 * 120.00374 * 214.97281 * 18 17 16
20 20 C 1.39966 * 120.00169 * 34.97269 * 18 17 16
21 21 N 1.30853 * 119.99573 * 355.67144 * 20 18 17
22 22 Si 1.86800 * 120.00228 * 175.67894 * 20 18 17
23 23 H 1.48502 * 109.47192 * 89.99846 * 22 20 18
24 24 H 1.48496 * 109.47016 * 209.99515 * 22 20 18
25 25 H 1.48497 * 109.47021 * 329.99654 * 22 20 18
26 26 C 1.39567 * 119.00308 * 359.97438 * 8 7 6
27 27 N 1.31708 * 120.49672 * 359.74786 * 26 8 7
28 28 H 1.08997 * 109.47210 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.47387 * 299.99551 * 1 2 3
30 30 H 1.08998 * 109.47385 * 59.99770 * 1 2 3
31 31 H 1.08998 * 109.47385 * 120.00229 * 2 1 3
32 32 H 1.09005 * 109.46883 * 59.99704 * 3 2 1
33 33 H 1.09000 * 109.47567 * 179.97438 * 3 2 1
34 34 H 1.09003 * 109.47440 * 300.00637 * 3 2 1
35 35 H 1.08002 * 120.29942 * 359.95706 * 6 5 4
36 36 H 1.08002 * 120.76741 * 180.02562 * 7 6 5
37 37 H 0.96996 * 120.00529 * 355.80594 * 11 9 8
38 38 H 1.08003 * 119.98693 * 0.02562 * 13 12 11
39 39 H 1.07999 * 119.69314 * 179.97438 * 14 13 12
40 40 H 1.07996 * 119.70466 * 179.97438 * 15 14 13
41 41 H 1.08004 * 120.02087 * 180.02562 * 16 15 14
42 42 H 0.97000 * 119.99906 * 179.97438 * 21 20 18
43 43 H 1.08001 * 119.75475 * 179.97438 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 2.0063 -0.6736 -1.1669
5 6 2.2114 -2.0091 -1.0655
6 6 2.6742 -2.7174 -2.1701
7 6 2.8812 -4.0672 -2.0649
8 6 2.6158 -4.6906 -0.8365
9 6 2.8237 -6.1424 -0.6732
10 8 3.2273 -6.8077 -1.6074
11 7 2.5660 -6.7310 0.5116
12 6 2.6778 -8.1106 0.6413
13 6 3.6498 -8.8029 -0.0651
14 6 3.7560 -10.1745 0.0674
15 6 2.8954 -10.8730 0.9043
16 6 1.9299 -10.2171 1.6111
17 6 1.8049 -8.8197 1.4999
18 6 0.8139 -8.1332 2.2321
19 1 0.3264 -7.2701 1.8035
20 6 0.4623 -8.5706 3.5144
21 7 0.9908 -9.6646 4.0002
22 14 -0.7615 -7.5927 4.5320
23 1 -2.1363 -8.0825 4.2580
24 1 -0.4536 -7.7631 5.9746
25 1 -0.6673 -6.1550 4.1722
26 6 2.1533 -3.9170 0.2291
27 7 1.9735 -2.6203 0.0850
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 1.8933 -0.5139 0.8899
32 1 1.6766 1.9563 0.8900
33 1 3.1300 1.4425 0.0005
34 1 1.6766 1.9564 -0.8899
35 1 2.8683 -2.2074 -3.1022
36 1 3.2404 -4.6385 -2.9081
37 1 2.3025 -6.1920 1.2738
38 1 4.3242 -8.2701 -0.7191
39 1 4.5147 -10.7082 -0.4856
40 1 2.9913 -11.9448 0.9964
41 1 1.2658 -10.7692 2.2596
42 1 0.7474 -9.9676 4.8890
43 1 1.9448 -4.3846 1.1800
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344335954.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:22:08
Heat of formation + Delta-G solvation = -19.145278 kcal
Electronic energy + Delta-G solvation = -26557.956925 eV
Core-core repulsion = 22761.177909 eV
Total energy + Delta-G solvation = -3796.779016 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.96182 -39.60314 -38.22890 -37.05566 -33.98918 -33.66073 -33.48006 -32.61262
-30.69555 -29.60643 -28.22047 -27.53572 -25.35227 -24.27322 -24.08772 -21.85182
-21.25509 -20.77839 -19.64382 -18.73544 -17.72037 -17.13117 -17.02379 -15.97408
-15.88170 -15.21710 -14.99416 -14.71428 -14.54704 -14.37897 -14.21751 -13.82929
-13.40023 -13.20380 -12.98186 -12.81173 -12.64891 -12.59256 -12.55483 -12.25976
-12.13535 -11.77098 -11.26307 -11.22489 -11.18851 -11.01932 -10.94201 -10.49571
-10.22486 -10.07033 -9.85602 -9.78315 -9.35180 -9.22126 -8.90816 -8.62322
-7.33642 -6.99365 -6.65656 -4.48234 0.72734 1.13666 2.63275 2.78740
2.87844 3.03257 3.04477 3.17561 3.28877 3.77775 3.88294 3.98752
4.07422 4.59103 4.63059 4.70461 4.77354 4.85027 4.93349 4.99657
5.22653 5.27062 5.43592 5.48386 5.52316 5.55696 5.59349 5.74621
5.86443 5.94199 6.09708 6.26900 6.30896 6.49271 6.55044 6.91139
7.03323 7.06252 7.16798 7.24869 7.62939 7.64145 7.68763 7.94857
8.06410 8.08959 8.36229 8.53357 8.77311 8.81315 8.97138 10.19460
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.012056 B = 0.003492 C = 0.002766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2321.868160 B = 8015.499761 C =10120.598830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.079 3.921
3 C -0.150 4.150
4 O -0.300 6.300
5 C 0.338 3.662
6 C -0.199 4.199
7 C 0.014 3.986
8 C -0.213 4.213
9 C 0.549 3.451
10 O -0.537 6.537
11 N -0.629 5.629
12 C 0.020 3.980
13 C -0.092 4.092
14 C -0.216 4.216
15 C -0.118 4.118
16 C -0.139 4.139
17 C 0.098 3.902
18 C -0.471 4.471
19 H 0.075 0.925
20 C 0.074 3.926
21 N -0.806 5.806
22 Si 0.912 3.088
23 H -0.270 1.270
24 H -0.277 1.277
25 H -0.263 1.263
26 C 0.175 3.825
27 N -0.542 5.542
28 H 0.063 0.937
29 H 0.071 0.929
30 H 0.060 0.940
31 H 0.092 0.908
32 H 0.077 0.923
33 H 0.063 0.937
34 H 0.064 0.936
35 H 0.145 0.855
36 H 0.153 0.847
37 H 0.402 0.598
38 H 0.111 0.889
39 H 0.091 0.909
40 H 0.089 0.911
41 H 0.131 0.869
42 H 0.279 0.721
43 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.275 16.694 -4.313 17.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.023 3.977
3 C -0.207 4.207
4 O -0.207 6.207
5 C 0.159 3.841
6 C -0.219 4.219
7 C -0.012 4.012
8 C -0.219 4.219
9 C 0.336 3.664
10 O -0.416 6.416
11 N -0.271 5.271
12 C -0.073 4.073
13 C -0.112 4.112
14 C -0.236 4.236
15 C -0.137 4.137
16 C -0.159 4.159
17 C 0.094 3.906
18 C -0.502 4.502
19 H 0.093 0.907
20 C -0.142 4.142
21 N -0.433 5.433
22 Si 0.736 3.264
23 H -0.195 1.195
24 H -0.202 1.202
25 H -0.187 1.187
26 C 0.018 3.982
27 N -0.265 5.265
28 H 0.082 0.918
29 H 0.090 0.910
30 H 0.079 0.921
31 H 0.110 0.890
32 H 0.095 0.905
33 H 0.082 0.918
34 H 0.083 0.917
35 H 0.163 0.837
36 H 0.171 0.829
37 H 0.238 0.762
38 H 0.129 0.871
39 H 0.109 0.891
40 H 0.107 0.893
41 H 0.149 0.851
42 H 0.090 0.910
43 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 0.268 16.811 -4.262 17.345
hybrid contribution -0.515 0.119 0.511 0.735
sum -0.247 16.930 -3.752 17.342
Atomic orbital electron populations
1.22217 0.94740 1.03137 1.02552 1.22397 0.94532 0.92769 0.88044
1.21908 1.01984 0.93873 1.02967 1.86258 1.79609 1.15989 1.38856
1.20046 0.89690 0.84611 0.89775 1.20766 1.07744 0.94178 0.99240
1.21265 0.90222 0.92867 0.96845 1.20951 1.09004 0.95520 0.96427
1.17880 0.79238 0.86134 0.83142 1.90729 1.46235 1.64446 1.40205
1.42754 1.65774 1.07359 1.11196 1.17803 0.99918 0.80930 1.08687
1.20669 0.96904 0.94146 0.99433 1.20383 1.03790 0.93890 1.05536
1.20561 0.97251 0.97855 0.98048 1.21185 0.99999 0.93889 1.00859
1.17461 0.90529 0.91665 0.90929 1.19295 1.18735 1.12719 0.99403
0.90732 1.25848 0.95363 0.94622 0.98336 1.69760 1.36988 1.19387
1.17131 0.86253 0.80614 0.80701 0.78794 1.19493 1.20227 1.18657
1.22761 0.89800 0.87446 0.98163 1.67320 1.22600 1.12333 1.24294
0.91786 0.91014 0.92051 0.88963 0.90450 0.91815 0.91677 0.83690
0.82895 0.76202 0.87145 0.89088 0.89258 0.85130 0.90993 0.81672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.52 9.53 37.15 0.35 -1.16 16
2 C 0.08 0.77 3.11 -26.74 -0.08 0.68 16
3 C -0.15 -1.09 9.56 37.16 0.36 -0.73 16
4 O -0.30 -3.53 9.75 -18.18 -0.18 -3.71 16
5 C 0.34 4.36 7.46 -16.96 -0.13 4.24 16
6 C -0.20 -2.36 9.97 -39.71 -0.40 -2.75 16
7 C 0.01 0.18 9.66 -39.28 -0.38 -0.20 16
8 C -0.21 -3.26 5.89 -104.83 -0.62 -3.88 16
9 C 0.55 10.47 7.61 -12.45 -0.09 10.38 16
10 O -0.54 -11.76 13.82 5.29 0.07 -11.69 16
11 N -0.63 -12.64 4.91 -10.41 -0.05 -12.69 16
12 C 0.02 0.48 6.34 -83.20 -0.53 -0.05 16
13 C -0.09 -2.17 8.68 -39.43 -0.34 -2.51 16
14 C -0.22 -4.96 10.04 -39.35 -0.39 -5.36 16
15 C -0.12 -2.77 9.97 -39.98 -0.40 -3.17 16
16 C -0.14 -3.53 8.61 -39.28 -0.34 -3.87 16
17 C 0.10 2.48 5.56 -106.65 -0.59 1.89 16
18 C -0.47 -11.56 8.22 -37.87 -0.31 -11.87 16
19 H 0.07 1.74 7.63 -52.49 -0.40 1.34 16
20 C 0.07 1.76 5.42 -17.32 -0.09 1.67 16
21 N -0.81 -19.90 10.62 55.55 0.59 -19.31 16
22 Si 0.91 17.80 29.56 -169.99 -5.03 12.78 16
23 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16
24 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16
25 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16
26 C 0.18 2.45 10.71 -17.11 -0.18 2.26 16
27 N -0.54 -7.39 8.62 -12.95 -0.11 -7.50 16
28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.09 0.99 6.96 -51.93 -0.36 0.62 16
32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
35 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16
36 H 0.15 1.91 7.73 -52.49 -0.41 1.50 16
37 H 0.40 7.17 6.16 -40.82 -0.25 6.92 16
38 H 0.11 2.58 6.19 -52.48 -0.32 2.25 16
39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16
40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16
41 H 0.13 3.41 6.16 -52.48 -0.32 3.09 16
42 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16
43 H 0.17 2.08 6.42 -52.49 -0.34 1.74 16
LS Contribution 363.49 15.07 5.48 5.48
Total: -1.00 -28.95 363.49 -8.74 -37.69
By element:
Atomic # 1 Polarization: 18.71 SS G_CDS: -5.34 Total: 13.37 kcal
Atomic # 6 Polarization: -10.25 SS G_CDS: -4.17 Total: -14.42 kcal
Atomic # 7 Polarization: -39.93 SS G_CDS: 0.43 Total: -39.50 kcal
Atomic # 8 Polarization: -15.29 SS G_CDS: -0.10 Total: -15.40 kcal
Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -28.95 -8.74 -37.69 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344335954.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.544 kcal
(2) G-P(sol) polarization free energy of solvation -28.951 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds