Wall clock time and date at job start Tue Mar 31 2020 14:22:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52996 * 109.47460 * 2 1
4 4 O 1.42907 * 109.47191 * 240.00272 * 2 1 3
5 5 C 1.35495 * 116.99810 * 269.99998 * 4 2 1
6 6 C 1.39146 * 119.51665 * 179.97438 * 5 4 2
7 7 C 1.36958 * 119.39917 * 179.97438 * 6 5 4
8 8 C 1.40281 * 118.47311 * 0.02562 * 7 6 5
9 9 C 1.47568 * 120.50028 * 180.02562 * 8 7 6
10 10 O 1.21585 * 119.99929 * 359.97438 * 9 8 7
11 11 N 1.34777 * 119.99883 * 179.97438 * 9 8 7
12 12 C 1.39020 * 119.99730 * 175.80314 * 11 9 8
13 13 C 1.38672 * 120.28730 * 34.55211 * 12 11 9
14 14 C 1.38203 * 120.03305 * 180.02562 * 13 12 11
15 15 C 1.38885 * 120.61861 * 0.02562 * 14 13 12
16 16 C 1.36457 * 120.57964 * 359.97438 * 15 14 13
17 17 C 1.40733 * 119.94883 * 359.68446 * 16 15 14
18 18 C 1.41049 * 120.30568 * 180.31678 * 17 16 15
19 19 H 1.07999 * 120.00374 * 214.97281 * 18 17 16
20 20 C 1.39966 * 120.00169 * 34.97269 * 18 17 16
21 21 N 1.30853 * 119.99573 * 355.67144 * 20 18 17
22 22 Si 1.86800 * 120.00228 * 175.67894 * 20 18 17
23 23 H 1.48502 * 109.47192 * 89.99846 * 22 20 18
24 24 H 1.48496 * 109.47016 * 209.99515 * 22 20 18
25 25 H 1.48497 * 109.47021 * 329.99654 * 22 20 18
26 26 C 1.39567 * 119.00308 * 359.97438 * 8 7 6
27 27 N 1.31708 * 120.49672 * 359.74786 * 26 8 7
28 28 H 1.08997 * 109.47210 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.47387 * 299.99551 * 1 2 3
30 30 H 1.08998 * 109.47385 * 59.99770 * 1 2 3
31 31 H 1.08998 * 109.47385 * 120.00229 * 2 1 3
32 32 H 1.09005 * 109.46883 * 59.99704 * 3 2 1
33 33 H 1.09000 * 109.47567 * 179.97438 * 3 2 1
34 34 H 1.09003 * 109.47440 * 300.00637 * 3 2 1
35 35 H 1.08002 * 120.29942 * 359.95706 * 6 5 4
36 36 H 1.08002 * 120.76741 * 180.02562 * 7 6 5
37 37 H 0.96996 * 120.00529 * 355.80594 * 11 9 8
38 38 H 1.08003 * 119.98693 * 0.02562 * 13 12 11
39 39 H 1.07999 * 119.69314 * 179.97438 * 14 13 12
40 40 H 1.07996 * 119.70466 * 179.97438 * 15 14 13
41 41 H 1.08004 * 120.02087 * 180.02562 * 16 15 14
42 42 H 0.97000 * 119.99906 * 179.97438 * 21 20 18
43 43 H 1.08001 * 119.75475 * 179.97438 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 2.0063 -0.6736 -1.1669
5 6 2.2114 -2.0091 -1.0655
6 6 2.6742 -2.7174 -2.1701
7 6 2.8812 -4.0672 -2.0649
8 6 2.6158 -4.6906 -0.8365
9 6 2.8237 -6.1424 -0.6732
10 8 3.2273 -6.8077 -1.6074
11 7 2.5660 -6.7310 0.5116
12 6 2.6778 -8.1106 0.6413
13 6 3.6498 -8.8029 -0.0651
14 6 3.7560 -10.1745 0.0674
15 6 2.8954 -10.8730 0.9043
16 6 1.9299 -10.2171 1.6111
17 6 1.8049 -8.8197 1.4999
18 6 0.8139 -8.1332 2.2321
19 1 0.3264 -7.2701 1.8035
20 6 0.4623 -8.5706 3.5144
21 7 0.9908 -9.6646 4.0002
22 14 -0.7615 -7.5927 4.5320
23 1 -2.1363 -8.0825 4.2580
24 1 -0.4536 -7.7631 5.9746
25 1 -0.6673 -6.1550 4.1722
26 6 2.1533 -3.9170 0.2291
27 7 1.9735 -2.6203 0.0850
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 1.8933 -0.5139 0.8899
32 1 1.6766 1.9563 0.8900
33 1 3.1300 1.4425 0.0005
34 1 1.6766 1.9564 -0.8899
35 1 2.8683 -2.2074 -3.1022
36 1 3.2404 -4.6385 -2.9081
37 1 2.3025 -6.1920 1.2738
38 1 4.3242 -8.2701 -0.7191
39 1 4.5147 -10.7082 -0.4856
40 1 2.9913 -11.9448 0.9964
41 1 1.2658 -10.7692 2.2596
42 1 0.7474 -9.9676 4.8890
43 1 1.9448 -4.3846 1.1800
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344335954.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:22:08
Heat of formation + Delta-G solvation = -35.278085 kcal
Electronic energy + Delta-G solvation = -26558.656497 eV
Core-core repulsion = 22761.177909 eV
Total energy + Delta-G solvation = -3797.478587 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.07149 -41.03454 -39.42479 -38.65568 -35.60960 -35.46949 -34.30620 -33.69374
-31.91989 -31.44199 -29.87432 -28.17303 -27.13732 -25.52685 -25.11400 -23.40067
-22.66339 -22.01701 -21.25463 -19.72978 -19.30720 -18.78969 -18.24770 -17.42848
-16.94015 -16.79855 -16.20244 -16.09838 -15.86239 -15.61780 -15.46412 -14.99375
-14.70447 -14.52324 -14.36783 -14.19231 -14.00814 -13.74219 -13.55548 -13.28496
-13.18039 -12.99492 -12.88914 -12.84580 -12.71788 -12.11089 -12.00021 -11.92771
-11.77341 -11.60936 -11.15825 -11.11745 -11.03388 -10.80430 -10.52616 -9.69090
-9.22651 -8.79427 -8.44451 -6.35831 -0.41462 0.10847 0.89287 1.09742
1.43448 1.51919 1.56937 1.87623 1.89571 2.24151 2.31944 2.73909
2.82604 3.06332 3.63522 3.70953 3.76681 3.89015 3.93999 4.01612
4.06151 4.27660 4.50488 4.53959 4.62210 4.65210 4.70958 4.76968
4.82512 4.85648 4.92690 5.03151 5.12883 5.20107 5.21822 5.26407
5.30384 5.35547 5.44593 5.79853 5.87254 6.11697 6.14228 6.19089
6.27208 6.58616 6.64599 6.73120 6.96441 7.01068 7.31422 8.42828
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.012056 B = 0.003492 C = 0.002766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2321.868160 B = 8015.499761 C =10120.598830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.070 3.930
3 C -0.145 4.145
4 O -0.301 6.301
5 C 0.337 3.663
6 C -0.189 4.189
7 C 0.016 3.984
8 C -0.230 4.230
9 C 0.553 3.447
10 O -0.569 6.569
11 N -0.630 5.630
12 C 0.017 3.983
13 C -0.106 4.106
14 C -0.218 4.218
15 C -0.123 4.123
16 C -0.163 4.163
17 C 0.069 3.931
18 C -0.490 4.490
19 H 0.080 0.920
20 C 0.035 3.965
21 N -0.836 5.836
22 Si 0.981 3.019
23 H -0.269 1.269
24 H -0.273 1.273
25 H -0.251 1.251
26 C 0.180 3.820
27 N -0.549 5.549
28 H 0.042 0.958
29 H 0.089 0.911
30 H 0.067 0.933
31 H 0.082 0.918
32 H 0.096 0.904
33 H 0.062 0.938
34 H 0.070 0.930
35 H 0.175 0.825
36 H 0.160 0.840
37 H 0.410 0.590
38 H 0.112 0.888
39 H 0.117 0.883
40 H 0.113 0.887
41 H 0.116 0.884
42 H 0.284 0.716
43 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.142 19.219 -4.415 19.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.015 3.985
3 C -0.202 4.202
4 O -0.208 6.208
5 C 0.158 3.842
6 C -0.209 4.209
7 C -0.010 4.010
8 C -0.236 4.236
9 C 0.342 3.658
10 O -0.450 6.450
11 N -0.272 5.272
12 C -0.078 4.078
13 C -0.126 4.126
14 C -0.238 4.238
15 C -0.141 4.141
16 C -0.184 4.184
17 C 0.066 3.934
18 C -0.521 4.521
19 H 0.098 0.902
20 C -0.178 4.178
21 N -0.464 5.464
22 Si 0.802 3.198
23 H -0.194 1.194
24 H -0.198 1.198
25 H -0.174 1.174
26 C 0.023 3.977
27 N -0.272 5.272
28 H 0.062 0.938
29 H 0.108 0.892
30 H 0.086 0.914
31 H 0.100 0.900
32 H 0.115 0.885
33 H 0.081 0.919
34 H 0.089 0.911
35 H 0.193 0.807
36 H 0.177 0.823
37 H 0.248 0.752
38 H 0.129 0.871
39 H 0.135 0.865
40 H 0.131 0.869
41 H 0.134 0.866
42 H 0.095 0.905
43 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -0.143 19.368 -4.371 19.855
hybrid contribution -0.354 -0.578 0.479 0.830
sum -0.497 18.790 -3.892 19.195
Atomic orbital electron populations
1.22200 0.94124 1.02146 1.03820 1.22658 0.95110 0.93864 0.86908
1.21914 1.01917 0.92131 1.04229 1.86274 1.79337 1.15278 1.39912
1.20345 0.88867 0.85223 0.89793 1.21010 1.06396 0.93425 1.00085
1.21384 0.89807 0.93564 0.96232 1.20663 1.11707 0.93207 0.98054
1.18368 0.77770 0.87534 0.82117 1.90696 1.47634 1.65659 1.41018
1.42733 1.66146 1.06171 1.12178 1.17945 0.99325 0.82638 1.07862
1.20853 0.97197 0.94774 0.99780 1.20702 1.04013 0.93858 1.05220
1.20796 0.96671 0.99129 0.97546 1.21208 1.01009 0.94285 1.01856
1.17792 0.91596 0.92107 0.91948 1.19504 1.19212 1.13192 1.00157
0.90217 1.26687 0.96777 0.95373 0.99006 1.69842 1.38087 1.20704
1.17717 0.85197 0.77836 0.79667 0.77057 1.19406 1.19754 1.17421
1.22842 0.89152 0.87570 0.98134 1.67373 1.23020 1.11913 1.24929
0.93831 0.89203 0.91380 0.90029 0.88534 0.91927 0.91068 0.80747
0.82257 0.75156 0.87051 0.86515 0.86923 0.86580 0.90484 0.80849
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.64 9.53 71.98 0.69 -1.95 16
2 C 0.07 1.23 3.11 30.59 0.10 1.32 16
3 C -0.14 -1.71 9.56 71.98 0.69 -1.02 16
4 O -0.30 -6.44 9.75 -87.96 -0.86 -7.29 16
5 C 0.34 8.06 7.46 84.82 0.63 8.70 16
6 C -0.19 -4.05 9.97 22.19 0.22 -3.83 16
7 C 0.02 0.39 9.66 22.47 0.22 0.61 16
8 C -0.23 -6.92 5.89 -20.00 -0.12 -7.04 16
9 C 0.55 21.25 7.61 86.70 0.66 21.91 16
10 O -0.57 -25.20 13.82 -3.98 -0.06 -25.25 16
11 N -0.63 -25.66 4.91 -305.11 -1.50 -27.16 16
12 C 0.02 0.81 6.34 38.91 0.25 1.06 16
13 C -0.11 -5.08 8.68 22.37 0.19 -4.89 16
14 C -0.22 -10.00 10.04 22.42 0.22 -9.77 16
15 C -0.12 -5.78 9.97 22.01 0.22 -5.56 16
16 C -0.16 -8.52 8.61 22.46 0.19 -8.33 16
17 C 0.07 3.61 5.56 -21.18 -0.12 3.49 16
18 C -0.49 -24.45 8.22 23.38 0.19 -24.26 16
19 H 0.08 3.75 7.63 -2.91 -0.02 3.73 16
20 C 0.03 1.66 5.42 85.26 0.46 2.12 16
21 N -0.84 -42.02 10.62 21.83 0.23 -41.78 16
22 Si 0.98 36.15 29.56 68.60 2.03 38.17 16
23 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16
24 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16
25 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16
26 C 0.18 4.89 10.71 85.03 0.91 5.80 16
27 N -0.55 -14.24 8.62 -307.75 -2.65 -16.89 16
28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.08 1.61 6.96 -2.39 -0.02 1.60 16
32 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16
33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16
36 H 0.16 3.80 7.73 -2.91 -0.02 3.78 16
37 H 0.41 14.84 6.16 -92.71 -0.57 14.27 16
38 H 0.11 5.27 6.19 -2.91 -0.02 5.25 16
39 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16
40 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16
41 H 0.12 6.30 6.16 -2.91 -0.02 6.28 16
42 H 0.28 13.08 8.30 -92.71 -0.77 12.31 16
43 H 0.17 4.27 6.42 -2.91 -0.02 4.25 16
Total: -1.00 -62.83 363.49 3.28 -59.54
By element:
Atomic # 1 Polarization: 41.84 SS G_CDS: 0.48 Total: 42.32 kcal
Atomic # 6 Polarization: -27.26 SS G_CDS: 5.61 Total: -21.65 kcal
Atomic # 7 Polarization: -81.92 SS G_CDS: -3.92 Total: -85.83 kcal
Atomic # 8 Polarization: -31.64 SS G_CDS: -0.91 Total: -32.55 kcal
Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.17 kcal
Total: -62.83 3.28 -59.54 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344335954.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.267 kcal
(2) G-P(sol) polarization free energy of solvation -62.829 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.563 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.278 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds