Wall clock time and date at job start Tue Mar 31 2020 15:06:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.46941 * 2 1
4 4 O 1.42897 * 109.47543 * 239.99694 * 2 1 3
5 5 C 1.35916 * 116.99922 * 86.09014 * 4 2 1
6 6 C 1.39848 * 120.09288 * 174.77394 * 5 4 2
7 7 N 1.31019 * 121.66545 * 179.97438 * 6 5 4
8 8 C 1.33695 * 121.39956 * 0.02562 * 7 6 5
9 9 C 1.40604 * 121.00698 * 179.97438 * 8 7 6
10 10 C 1.36077 * 119.76138 * 180.02562 * 9 8 7
11 11 C 1.39370 * 121.07416 * 359.97438 * 10 9 8
12 12 C 1.36123 * 120.85958 * 359.97438 * 11 10 9
13 13 C 1.40466 * 119.62312 * 0.02562 * 12 11 10
14 14 C 1.37000 * 120.09352 * 354.75510 * 5 4 2
15 15 C 1.50698 * 109.47216 * 119.99555 * 2 1 3
16 16 O 1.21292 * 120.00266 * 120.00245 * 15 2 1
17 17 N 1.34783 * 120.00136 * 300.00485 * 15 2 1
18 18 C 1.37095 * 120.00337 * 179.97438 * 17 15 2
19 19 H 1.07998 * 119.99625 * 223.89866 * 18 17 15
20 20 C 1.38942 * 120.00099 * 43.89391 * 18 17 15
21 21 N 1.31415 * 120.00285 * 17.65220 * 20 18 17
22 22 Si 1.86794 * 120.00234 * 197.65210 * 20 18 17
23 23 H 1.48506 * 109.47184 * 0.02562 * 22 20 18
24 24 H 1.48508 * 109.47241 * 119.99933 * 22 20 18
25 25 H 1.48498 * 109.47437 * 240.00062 * 22 20 18
26 26 C 1.46509 * 119.99457 * 359.97438 * 17 15 2
27 27 C 1.53005 * 117.49535 * 187.13204 * 26 17 15
28 28 C 1.53000 * 117.49655 * 118.47640 * 26 17 15
29 29 H 1.09003 * 109.46941 * 180.02562 * 1 2 3
30 30 H 1.08996 * 109.47370 * 300.00445 * 1 2 3
31 31 H 1.09002 * 109.46968 * 60.00713 * 1 2 3
32 32 H 1.07999 * 119.16700 * 359.96225 * 6 5 4
33 33 H 1.07994 * 120.12252 * 359.97438 * 9 8 7
34 34 H 1.07995 * 119.46106 * 180.02562 * 10 9 8
35 35 H 1.07997 * 119.56231 * 180.02562 * 11 10 9
36 36 H 1.08001 * 120.19152 * 180.02562 * 12 11 10
37 37 H 1.07996 * 120.93771 * 0.04437 * 14 5 4
38 38 H 0.96989 * 120.00817 * 184.95451 * 21 20 18
39 39 H 1.08996 * 115.55228 * 332.80178 * 26 17 15
40 40 H 1.09003 * 117.49430 * 0.02562 * 27 26 17
41 41 H 1.08997 * 117.49905 * 145.02017 * 27 26 17
42 42 H 1.09000 * 117.50080 * 214.97771 * 28 26 17
43 43 H 1.09008 * 117.49861 * 359.97145 * 28 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6737 -1.1667
5 6 2.1343 0.0680 -2.2985
6 6 2.6970 -0.4971 -3.4473
7 7 2.8345 0.1893 -4.5548
8 6 2.4425 1.4648 -4.6370
9 6 2.5945 2.1938 -5.8297
10 6 2.1870 3.4910 -5.8850
11 6 1.6182 4.1142 -4.7758
12 6 1.4537 3.4407 -3.6044
13 6 1.8628 2.1002 -3.5109
14 6 1.7119 1.3711 -2.3172
15 6 2.0323 -0.7103 1.2305
16 8 2.7297 -1.6964 1.1193
17 7 1.7067 -0.2498 2.4546
18 6 2.1632 -0.8963 3.5741
19 1 1.4957 -1.0757 4.4039
20 6 3.4845 -1.3206 3.6410
21 7 4.3783 -0.8190 2.8184
22 14 3.9908 -2.6041 4.9001
23 1 2.8064 -3.0065 5.7005
24 1 4.5422 -3.7928 4.2012
25 1 5.0260 -2.0342 5.7993
26 6 0.8647 0.9417 2.5889
27 6 0.6674 1.5125 3.9947
28 6 -0.4814 0.7792 3.2978
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5137 -0.8901
32 1 3.0268 -1.5252 -3.4208
33 1 3.0337 1.7263 -6.6984
34 1 2.3057 4.0462 -6.8036
35 1 1.3030 5.1447 -4.8470
36 1 1.0112 3.9342 -2.7517
37 1 1.2751 1.8258 -1.4404
38 1 5.2840 -1.1660 2.8159
39 1 0.9155 1.6489 1.7611
40 1 1.1644 1.0017 4.8195
41 1 0.5880 2.5952 4.0917
42 1 -1.3162 1.3798 2.9366
43 1 -0.7408 -0.2143 3.6638
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000348167107.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:06:43
Heat of formation + Delta-G solvation = 14.837249 kcal
Electronic energy + Delta-G solvation = -27504.524992 eV
Core-core repulsion = 23709.219569 eV
Total energy + Delta-G solvation = -3795.305423 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.18218 -40.95052 -39.63553 -37.85783 -37.48375 -34.84214 -34.06999 -33.55649
-32.29691 -31.13752 -30.36223 -27.23985 -25.94163 -25.04541 -24.04540 -23.24516
-23.06508 -22.64153 -21.39001 -19.55760 -19.16621 -18.46254 -18.05358 -17.75816
-16.83458 -16.78009 -16.39485 -16.19737 -15.61083 -15.57663 -15.44647 -15.23822
-14.85042 -14.70397 -14.58216 -14.20743 -14.08500 -13.64768 -13.26594 -13.09967
-12.89167 -12.78408 -12.73093 -12.65866 -12.59008 -12.25814 -12.23199 -12.11295
-12.02549 -11.60010 -11.24463 -11.10978 -10.73770 -10.72723 -9.98835 -9.52003
-9.08777 -9.00437 -8.22139 -6.06057 -0.64460 -0.15870 0.97881 1.34618
1.42092 1.49913 1.79187 1.95571 2.15148 2.37337 3.03794 3.08486
3.10783 3.29724 3.30942 3.57137 3.59476 3.70640 3.88051 3.88652
3.96813 4.03609 4.12302 4.22543 4.26764 4.34526 4.40823 4.52392
4.60628 4.70333 4.71957 4.87921 4.92634 4.95002 5.01976 5.11027
5.16962 5.28189 5.38233 5.43214 5.45664 5.50955 5.51416 5.87034
6.11457 6.23651 6.76199 6.95860 7.13654 7.58945 8.23780 8.82784
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.017669 B = 0.003389 C = 0.003058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1584.316323 B = 8259.397028 C = 9155.406142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.080 3.920
3 H 0.094 0.906
4 O -0.304 6.304
5 C 0.069 3.931
6 C 0.108 3.892
7 N -0.455 5.455
8 C 0.062 3.938
9 C -0.100 4.100
10 C -0.104 4.104
11 C -0.100 4.100
12 C -0.115 4.115
13 C -0.076 4.076
14 C -0.167 4.167
15 C 0.469 3.531
16 O -0.574 6.574
17 N -0.433 5.433
18 C -0.348 4.348
19 H 0.086 0.914
20 C 0.018 3.982
21 N -0.871 5.871
22 Si 0.965 3.035
23 H -0.254 1.254
24 H -0.297 1.297
25 H -0.274 1.274
26 C 0.036 3.964
27 C -0.172 4.172
28 C -0.176 4.176
29 H 0.056 0.944
30 H 0.108 0.892
31 H 0.088 0.912
32 H 0.170 0.830
33 H 0.141 0.859
34 H 0.163 0.837
35 H 0.164 0.836
36 H 0.153 0.847
37 H 0.163 0.837
38 H 0.258 0.742
39 H 0.130 0.870
40 H 0.080 0.920
41 H 0.120 0.880
42 H 0.131 0.869
43 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.699 14.080 -12.019 21.382
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.020 3.980
3 H 0.112 0.888
4 O -0.216 6.216
5 C 0.021 3.979
6 C -0.066 4.066
7 N -0.163 5.163
8 C -0.059 4.059
9 C -0.119 4.119
10 C -0.123 4.123
11 C -0.117 4.117
12 C -0.134 4.134
13 C -0.077 4.077
14 C -0.194 4.194
15 C 0.257 3.743
16 O -0.454 6.454
17 N -0.155 5.155
18 C -0.475 4.475
19 H 0.103 0.897
20 C -0.188 4.188
21 N -0.506 5.506
22 Si 0.790 3.210
23 H -0.177 1.177
24 H -0.224 1.224
25 H -0.200 1.200
26 C -0.068 4.068
27 C -0.209 4.209
28 C -0.214 4.214
29 H 0.075 0.925
30 H 0.126 0.874
31 H 0.107 0.893
32 H 0.187 0.813
33 H 0.159 0.841
34 H 0.181 0.819
35 H 0.181 0.819
36 H 0.171 0.829
37 H 0.180 0.820
38 H 0.067 0.933
39 H 0.148 0.852
40 H 0.099 0.901
41 H 0.138 0.862
42 H 0.149 0.851
43 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -9.736 13.106 -12.836 20.768
hybrid contribution 0.619 -0.837 1.537 1.856
sum -9.117 12.270 -11.299 19.009
Atomic orbital electron populations
1.22462 0.90550 1.03986 1.05504 1.22284 0.96986 0.96062 0.82633
0.88835 1.86212 1.81114 1.37581 1.16692 1.20128 0.97330 0.92157
0.88277 1.22585 0.96556 1.01209 0.86234 1.68107 1.15943 1.07635
1.24661 1.19375 1.00267 0.90662 0.95642 1.20992 1.00251 0.94977
0.95670 1.21308 0.96857 0.93814 1.00368 1.21398 0.96828 1.01577
0.91913 1.21293 1.00206 0.91589 1.00310 1.18879 0.99389 0.96594
0.92876 1.21755 1.04416 0.93276 0.99917 1.20251 0.83702 0.85732
0.84651 1.90519 1.39509 1.29306 1.86095 1.42810 1.45734 1.23352
1.03570 1.19170 0.93364 1.38391 0.96584 0.89672 1.26057 0.95555
0.98648 0.98519 1.69973 1.03267 1.38465 1.38945 0.85340 0.78760
0.78599 0.78319 1.17738 1.22392 1.19976 1.22143 0.95646 0.91018
0.98002 1.23200 1.01961 1.00561 0.95227 1.23408 0.92104 1.01869
1.04041 0.92509 0.87351 0.89320 0.81282 0.84086 0.81937 0.81864
0.82930 0.82006 0.93309 0.85234 0.90140 0.86207 0.85059 0.90498
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.86 8.84 71.98 0.64 -4.22 16
2 C 0.08 3.10 1.85 29.85 0.06 3.15 16
3 H 0.09 3.27 5.66 -2.39 -0.01 3.26 16
4 O -0.30 -12.71 9.33 -73.57 -0.69 -13.39 16
5 C 0.07 2.42 6.60 22.37 0.15 2.57 16
6 C 0.11 3.67 11.10 85.20 0.95 4.61 16
7 N -0.46 -14.76 10.33 -188.23 -1.95 -16.71 16
8 C 0.06 1.76 6.60 40.29 0.27 2.03 16
9 C -0.10 -2.17 9.98 22.34 0.22 -1.94 16
10 C -0.10 -1.55 9.94 22.04 0.22 -1.33 16
11 C -0.10 -1.39 9.96 22.05 0.22 -1.17 16
12 C -0.12 -2.14 9.77 22.32 0.22 -1.92 16
13 C -0.08 -2.00 5.74 -21.28 -0.12 -2.12 16
14 C -0.17 -4.82 8.10 22.58 0.18 -4.64 16
15 C 0.47 24.18 6.44 87.66 0.56 24.75 16
16 O -0.57 -36.20 14.20 15.97 0.23 -35.98 16
17 N -0.43 -20.96 2.85 -613.11 -1.75 -22.70 16
18 C -0.35 -18.77 7.81 84.04 0.66 -18.11 16
19 H 0.09 4.39 7.41 -2.91 -0.02 4.37 16
20 C 0.02 1.04 4.40 84.92 0.37 1.41 16
21 N -0.87 -53.68 11.66 21.66 0.25 -53.43 16
22 Si 0.96 45.80 29.59 68.60 2.03 47.83 16
23 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16
24 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16
25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16
26 C 0.04 1.27 4.30 44.99 0.19 1.46 16
27 C -0.17 -5.30 9.81 30.62 0.30 -5.00 16
28 C -0.18 -4.82 9.37 30.62 0.29 -4.54 16
29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
30 H 0.11 2.73 4.35 -2.39 -0.01 2.72 16
31 H 0.09 2.03 7.06 -2.39 -0.02 2.01 16
32 H 0.17 5.39 8.06 -2.91 -0.02 5.36 16
33 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16
34 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16
35 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16
36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16
37 H 0.16 3.88 5.54 -2.91 -0.02 3.86 16
38 H 0.26 15.52 8.32 -92.72 -0.77 14.75 16
39 H 0.13 3.72 6.27 -2.39 -0.01 3.71 16
40 H 0.08 2.97 6.83 -2.39 -0.02 2.95 16
41 H 0.12 2.84 8.14 -2.39 -0.02 2.83 16
42 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16
43 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16
Total: -1.00 -80.77 354.20 4.54 -76.23
By element:
Atomic # 1 Polarization: 22.11 SS G_CDS: 1.05 Total: 23.16 kcal
Atomic # 6 Polarization: -10.37 SS G_CDS: 5.37 Total: -5.01 kcal
Atomic # 7 Polarization: -89.40 SS G_CDS: -3.44 Total: -92.84 kcal
Atomic # 8 Polarization: -48.91 SS G_CDS: -0.46 Total: -49.37 kcal
Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal
Total: -80.77 4.54 -76.23 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348167107.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.067 kcal
(2) G-P(sol) polarization free energy of solvation -80.774 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.293 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds