Wall clock time and date at job start Tue Mar 31 2020 14:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35678 * 116.99858 * 2 1 4 4 C 1.38923 * 119.68336 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.10973 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.75639 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46686 * 19.99901 * 6 5 4 8 8 C 1.52992 * 109.47233 * 259.99720 * 6 5 4 9 9 N 1.46495 * 109.46915 * 139.99448 * 6 5 4 10 10 C 1.34776 * 119.99932 * 204.99734 * 9 6 5 11 11 O 1.21584 * 120.00035 * 0.02562 * 10 9 6 12 12 C 1.47640 * 120.00138 * 180.02562 * 10 9 6 13 13 C 1.40017 * 119.89372 * 359.73018 * 12 10 9 14 14 C 1.36326 * 120.10371 * 179.71587 * 13 12 10 15 15 C 1.40880 * 119.89202 * 0.57877 * 14 13 12 16 16 C 1.41111 * 120.10580 * 179.67867 * 15 14 13 17 17 H 1.07999 * 119.99865 * 204.65482 * 16 15 14 18 18 C 1.40228 * 119.99914 * 24.64515 * 16 15 14 19 19 N 1.30646 * 119.99713 * 17.86777 * 18 16 15 20 20 Si 1.86802 * 120.00209 * 197.87293 * 18 16 15 21 21 H 1.48491 * 109.47251 * 89.99816 * 20 18 16 22 22 H 1.48499 * 109.47185 * 210.00122 * 20 18 16 23 23 H 1.48500 * 109.46614 * 329.99945 * 20 18 16 24 24 C 1.40886 * 119.79426 * 359.69248 * 15 14 13 25 25 C 1.36319 * 119.89353 * 0.02562 * 24 15 14 26 26 C 1.38826 * 118.48858 * 359.97438 * 5 4 3 27 27 C 1.38054 * 119.28640 * 0.02562 * 26 5 4 28 28 N 1.31962 * 120.83602 * 0.02562 * 27 26 5 29 29 H 1.08998 * 109.47302 * 300.00035 * 1 2 3 30 30 H 1.08999 * 109.46901 * 60.00342 * 1 2 3 31 31 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.44362 * 359.95137 * 4 3 2 33 33 H 1.09004 * 109.46933 * 59.99589 * 8 6 5 34 34 H 1.08993 * 109.47412 * 179.97438 * 8 6 5 35 35 H 1.09006 * 109.47270 * 300.00485 * 8 6 5 36 36 H 0.97004 * 120.00439 * 25.00373 * 9 6 5 37 37 H 1.07994 * 119.94868 * 359.97438 * 13 12 10 38 38 H 1.08000 * 120.04832 * 180.25215 * 14 13 12 39 39 H 0.97003 * 119.99524 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.05645 * 179.97438 * 24 15 14 41 41 H 1.07999 * 119.94916 * 179.97438 * 25 24 15 42 42 H 1.07993 * 120.35779 * 179.97438 * 26 5 4 43 43 H 1.07999 * 119.57784 * 180.27890 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0011 6 6 5.5512 2.6270 -0.0011 7 1 5.9864 1.6913 -0.3522 8 6 6.0408 2.9160 1.4193 9 7 5.9582 3.7184 -0.8895 10 6 7.1843 3.7103 -1.4490 11 8 7.9524 2.7968 -1.2168 12 6 7.5947 4.8105 -2.3439 13 6 6.7063 5.8584 -2.6143 14 6 7.0829 6.8795 -3.4353 15 6 8.3638 6.8728 -4.0218 16 6 8.7558 7.9239 -4.8778 17 1 9.5212 7.7578 -5.6214 18 6 8.1515 9.1841 -4.7629 19 7 7.4996 9.4992 -3.6754 20 14 8.2784 10.4122 -6.1648 21 1 7.1348 10.2237 -7.0930 22 1 8.2498 11.7925 -5.6178 23 1 9.5517 10.1965 -6.8979 24 6 9.2521 5.8133 -3.7513 25 6 8.8688 4.7996 -2.9244 26 6 3.2504 3.6492 -0.0016 27 6 1.8770 3.5097 -0.0010 28 7 1.3185 2.3140 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0229 0.3695 -0.0002 33 1 5.7378 2.1039 2.0803 34 1 7.1276 2.9979 1.4194 35 1 5.6055 3.8517 1.7704 36 1 5.3453 4.4471 -1.0750 37 1 5.7227 5.8600 -2.1683 38 1 6.3984 7.6894 -3.6400 39 1 7.0819 10.3711 -3.5959 40 1 10.2349 5.8037 -4.1989 41 1 9.5488 3.9867 -2.7167 42 1 3.6992 4.6314 -0.0016 43 1 1.2517 4.3902 -0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359902262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:35 Heat of formation + Delta-G solvation = -26.630095 kcal Electronic energy + Delta-G solvation = -26111.277995 eV Core-core repulsion = 22314.174413 eV Total energy + Delta-G solvation = -3797.103582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92495 -39.34013 -38.18516 -37.19848 -35.50446 -33.90589 -32.41502 -30.90594 -30.49664 -29.50494 -29.32485 -27.47296 -25.98454 -24.33430 -23.66729 -22.25080 -21.16130 -20.74812 -19.66073 -18.30174 -17.55881 -17.27943 -16.83758 -16.21015 -15.95437 -15.65077 -15.30485 -14.70695 -14.46002 -14.24656 -14.07420 -13.93900 -13.66206 -13.44630 -13.17715 -12.85104 -12.63449 -12.43053 -12.20567 -12.06880 -11.97845 -11.81886 -11.41880 -11.39497 -11.31297 -11.20069 -10.98683 -10.68204 -10.07316 -9.88749 -9.85403 -9.59300 -9.38859 -9.02140 -8.73886 -8.70516 -7.75739 -7.58140 -7.07027 -4.63638 0.95408 1.04513 2.18928 2.84150 2.89507 2.93761 2.96131 3.00570 3.52194 3.71405 3.73832 3.82703 4.11642 4.39520 4.53493 4.80388 4.90292 4.95409 5.04341 5.06773 5.28467 5.30300 5.40309 5.51678 5.54708 5.58670 5.72619 5.82517 5.95648 6.00193 6.14744 6.19028 6.28699 6.30542 6.73746 6.79539 6.85752 7.01213 7.01782 7.09936 7.40116 7.61073 7.64336 7.74825 7.82794 8.03703 8.16090 8.36593 8.59859 8.71857 9.00697 9.84934 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002508 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.251002 B =11163.567092 C =12179.347916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.180 4.180 5 C -0.006 4.006 6 C 0.184 3.816 7 H 0.099 0.901 8 C -0.156 4.156 9 N -0.737 5.737 10 C 0.575 3.425 11 O -0.573 6.573 12 C -0.285 4.285 13 C -0.062 4.062 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.441 4.441 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.771 5.771 20 Si 0.914 3.086 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.239 4.239 25 C -0.021 4.021 26 C -0.203 4.203 27 C 0.143 3.857 28 N -0.543 5.543 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.143 0.857 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 -8.066 7.061 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.142 3.858 4 C -0.201 4.201 5 C -0.014 4.014 6 C 0.079 3.921 7 H 0.117 0.883 8 C -0.215 4.215 9 N -0.391 5.391 10 C 0.370 3.630 11 O -0.455 6.455 12 C -0.289 4.289 13 C -0.081 4.081 14 C -0.197 4.197 15 C 0.125 3.875 16 C -0.469 4.469 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.394 5.394 20 Si 0.738 3.262 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.258 4.258 25 C -0.040 4.040 26 C -0.223 4.223 27 C -0.012 4.012 28 N -0.267 5.267 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.161 0.839 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.702 -8.867 7.351 17.147 hybrid contribution 0.224 1.270 -0.575 1.412 sum -12.478 -7.598 6.776 16.104 Atomic orbital electron populations 1.22843 0.77274 1.02851 1.02448 1.86238 1.22878 1.24592 1.87891 1.19756 0.89180 0.84720 0.92192 1.20873 0.91985 0.98992 1.08263 1.20270 0.96089 0.92371 0.92705 1.19652 0.87740 0.93281 0.91461 0.88306 1.22161 1.02770 1.01857 0.94715 1.46032 1.17449 1.25630 1.49958 1.18591 0.79938 0.85850 0.78607 1.90634 1.52549 1.38217 1.64057 1.18856 0.98615 0.99443 1.12030 1.20456 0.96295 0.93925 0.97464 1.20975 0.97144 0.98971 1.02635 1.17795 0.90380 0.90885 0.88439 1.19868 1.17949 0.94043 1.15023 0.89666 1.26108 0.92804 0.99710 0.96116 1.69743 1.23483 1.21884 1.24289 0.86200 0.80319 0.78619 0.81104 1.18916 1.19999 1.18258 1.20719 0.99498 0.98980 1.06615 1.20362 0.93800 0.96169 0.93700 1.21846 0.94762 0.99637 1.06089 1.22376 0.92651 0.93617 0.92574 1.67306 1.40971 0.98847 1.19607 0.92347 0.92295 0.88699 0.83897 0.91856 0.90957 0.92206 0.76612 0.89464 0.86183 0.90208 0.88361 0.88065 0.84333 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.55 10.48 -18.74 -0.20 -3.75 16 3 C 0.32 3.96 7.49 -17.12 -0.13 3.83 16 4 C -0.18 -2.16 9.71 -39.28 -0.38 -2.54 16 5 C -0.01 -0.07 4.98 -104.35 -0.52 -0.59 16 6 C 0.18 2.51 2.81 -69.09 -0.19 2.32 16 7 H 0.10 1.47 7.48 -51.93 -0.39 1.08 16 8 C -0.16 -1.94 9.47 37.15 0.35 -1.59 16 9 N -0.74 -11.80 4.98 -55.94 -0.28 -12.08 16 10 C 0.57 11.78 7.73 -12.42 -0.10 11.68 16 11 O -0.57 -13.08 15.98 5.29 0.08 -13.00 16 12 C -0.28 -6.35 5.89 -104.73 -0.62 -6.96 16 13 C -0.06 -1.34 9.47 -39.60 -0.38 -1.72 16 14 C -0.18 -4.27 8.63 -39.27 -0.34 -4.61 16 15 C 0.13 3.21 5.58 -106.81 -0.60 2.62 16 16 C -0.44 -10.81 9.04 -37.75 -0.34 -11.15 16 17 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 18 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 19 N -0.77 -18.11 10.95 55.56 0.61 -17.50 16 20 Si 0.91 17.02 29.60 -169.99 -5.03 11.99 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 24 C -0.24 -5.69 9.73 -39.27 -0.38 -6.07 16 25 C -0.02 -0.49 9.52 -39.61 -0.38 -0.87 16 26 C -0.20 -2.20 9.15 -39.43 -0.36 -2.56 16 27 C 0.14 1.49 11.18 -17.56 -0.20 1.30 16 28 N -0.54 -6.53 9.22 -13.33 -0.12 -6.65 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 5.74 4.95 -40.82 -0.20 5.54 16 37 H 0.09 1.58 6.37 -52.49 -0.33 1.24 16 38 H 0.12 2.91 6.16 -52.49 -0.32 2.59 16 39 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 40 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 41 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 42 H 0.14 1.32 7.01 -52.49 -0.37 0.95 16 43 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -28.93 367.17 -8.36 -37.29 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.37 Total: 12.08 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.59 Total: -13.90 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.21 Total: -36.23 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.11 Total: -16.75 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.93 -8.36 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359902262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds