Wall clock time and date at job start Tue Mar 31 2020 14:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35678 * 116.99858 * 2 1 4 4 C 1.38923 * 119.68336 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.10973 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.75639 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46686 * 19.99901 * 6 5 4 8 8 C 1.52992 * 109.47233 * 259.99720 * 6 5 4 9 9 N 1.46495 * 109.46915 * 139.99448 * 6 5 4 10 10 C 1.34776 * 119.99932 * 204.99734 * 9 6 5 11 11 O 1.21584 * 120.00035 * 0.02562 * 10 9 6 12 12 C 1.47640 * 120.00138 * 180.02562 * 10 9 6 13 13 C 1.40017 * 119.89372 * 359.73018 * 12 10 9 14 14 C 1.36326 * 120.10371 * 179.71587 * 13 12 10 15 15 C 1.40880 * 119.89202 * 0.57877 * 14 13 12 16 16 C 1.41111 * 120.10580 * 179.67867 * 15 14 13 17 17 H 1.07999 * 119.99865 * 204.65482 * 16 15 14 18 18 C 1.40228 * 119.99914 * 24.64515 * 16 15 14 19 19 N 1.30646 * 119.99713 * 17.86777 * 18 16 15 20 20 Si 1.86802 * 120.00209 * 197.87293 * 18 16 15 21 21 H 1.48491 * 109.47251 * 89.99816 * 20 18 16 22 22 H 1.48499 * 109.47185 * 210.00122 * 20 18 16 23 23 H 1.48500 * 109.46614 * 329.99945 * 20 18 16 24 24 C 1.40886 * 119.79426 * 359.69248 * 15 14 13 25 25 C 1.36319 * 119.89353 * 0.02562 * 24 15 14 26 26 C 1.38826 * 118.48858 * 359.97438 * 5 4 3 27 27 C 1.38054 * 119.28640 * 0.02562 * 26 5 4 28 28 N 1.31962 * 120.83602 * 0.02562 * 27 26 5 29 29 H 1.08998 * 109.47302 * 300.00035 * 1 2 3 30 30 H 1.08999 * 109.46901 * 60.00342 * 1 2 3 31 31 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.44362 * 359.95137 * 4 3 2 33 33 H 1.09004 * 109.46933 * 59.99589 * 8 6 5 34 34 H 1.08993 * 109.47412 * 179.97438 * 8 6 5 35 35 H 1.09006 * 109.47270 * 300.00485 * 8 6 5 36 36 H 0.97004 * 120.00439 * 25.00373 * 9 6 5 37 37 H 1.07994 * 119.94868 * 359.97438 * 13 12 10 38 38 H 1.08000 * 120.04832 * 180.25215 * 14 13 12 39 39 H 0.97003 * 119.99524 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.05645 * 179.97438 * 24 15 14 41 41 H 1.07999 * 119.94916 * 179.97438 * 25 24 15 42 42 H 1.07993 * 120.35779 * 179.97438 * 26 5 4 43 43 H 1.07999 * 119.57784 * 180.27890 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0011 6 6 5.5512 2.6270 -0.0011 7 1 5.9864 1.6913 -0.3522 8 6 6.0408 2.9160 1.4193 9 7 5.9582 3.7184 -0.8895 10 6 7.1843 3.7103 -1.4490 11 8 7.9524 2.7968 -1.2168 12 6 7.5947 4.8105 -2.3439 13 6 6.7063 5.8584 -2.6143 14 6 7.0829 6.8795 -3.4353 15 6 8.3638 6.8728 -4.0218 16 6 8.7558 7.9239 -4.8778 17 1 9.5212 7.7578 -5.6214 18 6 8.1515 9.1841 -4.7629 19 7 7.4996 9.4992 -3.6754 20 14 8.2784 10.4122 -6.1648 21 1 7.1348 10.2237 -7.0930 22 1 8.2498 11.7925 -5.6178 23 1 9.5517 10.1965 -6.8979 24 6 9.2521 5.8133 -3.7513 25 6 8.8688 4.7996 -2.9244 26 6 3.2504 3.6492 -0.0016 27 6 1.8770 3.5097 -0.0010 28 7 1.3185 2.3140 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0229 0.3695 -0.0002 33 1 5.7378 2.1039 2.0803 34 1 7.1276 2.9979 1.4194 35 1 5.6055 3.8517 1.7704 36 1 5.3453 4.4471 -1.0750 37 1 5.7227 5.8600 -2.1683 38 1 6.3984 7.6894 -3.6400 39 1 7.0819 10.3711 -3.5959 40 1 10.2349 5.8037 -4.1989 41 1 9.5488 3.9867 -2.7167 42 1 3.6992 4.6314 -0.0016 43 1 1.2517 4.3902 -0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359902262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:34 Heat of formation + Delta-G solvation = -43.864639 kcal Electronic energy + Delta-G solvation = -26112.025341 eV Core-core repulsion = 22314.174413 eV Total energy + Delta-G solvation = -3797.850928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83598 -40.81334 -39.26802 -38.76494 -36.76503 -35.66236 -33.65872 -32.12001 -31.63015 -31.28811 -30.64759 -28.18319 -27.69390 -25.42520 -24.53769 -23.76472 -22.82961 -22.04824 -21.18541 -19.42789 -19.30374 -18.23585 -18.16516 -17.25995 -17.01369 -16.86112 -16.66906 -15.86807 -15.80411 -15.65980 -15.42436 -15.01983 -14.98003 -14.70956 -14.47158 -14.30016 -13.94033 -13.77647 -13.68169 -13.24860 -13.19427 -13.04096 -12.85170 -12.63718 -12.61137 -12.37543 -12.25013 -12.16697 -11.75793 -11.35734 -11.12062 -10.88635 -10.74591 -10.64621 -10.12553 -9.56345 -9.55375 -9.40346 -8.78881 -6.47461 0.07688 0.16073 0.44857 1.16409 1.39586 1.44053 1.53650 2.02218 2.12996 2.18124 2.36152 2.72704 2.79640 3.26671 3.47726 3.70270 3.89195 4.04038 4.08633 4.19919 4.31651 4.34545 4.39635 4.43643 4.44423 4.46134 4.66020 4.70028 4.75935 4.84731 4.89167 4.93819 5.03941 5.16551 5.17998 5.21615 5.31226 5.38300 5.56302 5.60705 5.83114 5.95130 6.00444 6.20356 6.23926 6.54958 6.66893 6.78158 6.79337 6.89888 7.42149 8.16292 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002508 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.251002 B =11163.567092 C =12179.347916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.308 3.692 4 C -0.189 4.189 5 C -0.011 4.011 6 C 0.186 3.814 7 H 0.085 0.915 8 C -0.151 4.151 9 N -0.719 5.719 10 C 0.576 3.424 11 O -0.600 6.600 12 C -0.293 4.293 13 C -0.052 4.052 14 C -0.198 4.198 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.084 0.916 18 C 0.039 3.961 19 N -0.796 5.796 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.259 1.259 24 C -0.253 4.253 25 C -0.033 4.033 26 C -0.203 4.203 27 C 0.144 3.856 28 N -0.552 5.552 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.297 0.703 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.155 0.845 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 -7.348 7.430 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C 0.130 3.870 4 C -0.210 4.210 5 C -0.019 4.019 6 C 0.081 3.919 7 H 0.103 0.897 8 C -0.209 4.209 9 N -0.373 5.373 10 C 0.370 3.630 11 O -0.484 6.484 12 C -0.297 4.297 13 C -0.071 4.071 14 C -0.217 4.217 15 C 0.097 3.903 16 C -0.500 4.500 17 H 0.102 0.898 18 C -0.181 4.181 19 N -0.420 5.420 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.183 1.183 24 C -0.273 4.273 25 C -0.052 4.052 26 C -0.224 4.224 27 C -0.011 4.011 28 N -0.277 5.277 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.166 0.834 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.245 0.755 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.172 0.828 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.673 -8.164 7.748 18.493 hybrid contribution 0.747 0.960 -0.602 1.357 sum -13.927 -7.204 7.146 17.231 Atomic orbital electron populations 1.23059 0.75711 1.04639 1.02318 1.86221 1.24493 1.24417 1.87795 1.19919 0.89430 0.85179 0.92513 1.20967 0.92227 0.99303 1.08492 1.20085 0.94885 0.93067 0.93894 1.19706 0.89029 0.91657 0.91498 0.89721 1.22106 1.01273 1.03371 0.94196 1.45857 1.15951 1.26332 1.49120 1.18349 0.81054 0.84980 0.78591 1.90621 1.53760 1.39014 1.65011 1.19152 0.98396 1.00193 1.11977 1.20721 0.97617 0.92555 0.96240 1.21018 0.96888 0.99805 1.03976 1.18147 0.91231 0.91590 0.89288 1.20108 1.19132 0.95130 1.15635 0.89807 1.26899 0.91981 1.00874 0.98319 1.69756 1.23618 1.22957 1.25622 0.85124 0.80218 0.76330 0.77696 1.18347 1.18888 1.18259 1.20850 0.99851 0.99323 1.07264 1.20516 0.94652 0.96134 0.93899 1.22040 0.94993 0.99813 1.05506 1.22902 0.92932 0.94052 0.91245 1.67373 1.41271 0.99269 1.19777 0.92224 0.92593 0.86056 0.83365 0.89803 0.93165 0.90980 0.75475 0.85791 0.86737 0.89151 0.87921 0.87895 0.82785 0.79091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 113.37 1.18 1.73 16 2 O -0.32 -7.03 10.48 -89.95 -0.94 -7.97 16 3 C 0.31 7.19 7.49 84.79 0.63 7.83 16 4 C -0.19 -4.29 9.71 22.47 0.22 -4.07 16 5 C -0.01 -0.25 4.98 -19.69 -0.10 -0.35 16 6 C 0.19 4.82 2.81 44.25 0.12 4.94 16 7 H 0.08 2.48 7.48 -2.38 -0.02 2.46 16 8 C -0.15 -3.51 9.47 71.98 0.68 -2.83 16 9 N -0.72 -21.94 4.98 -449.17 -2.24 -24.18 16 10 C 0.58 23.29 7.73 86.73 0.67 23.96 16 11 O -0.60 -27.49 15.98 -3.98 -0.06 -27.55 16 12 C -0.29 -12.98 5.89 -19.93 -0.12 -13.10 16 13 C -0.05 -2.22 9.47 22.26 0.21 -2.00 16 14 C -0.20 -9.52 8.63 22.47 0.19 -9.33 16 15 C 0.10 5.15 5.58 -21.28 -0.12 5.04 16 16 C -0.47 -23.59 9.04 23.46 0.21 -23.38 16 17 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 18 C 0.04 1.76 5.14 85.35 0.44 2.20 16 19 N -0.80 -37.22 10.95 21.87 0.24 -36.98 16 20 Si 0.99 34.28 29.60 68.60 2.03 36.31 16 21 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 22 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 23 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 24 C -0.25 -12.44 9.73 22.47 0.22 -12.22 16 25 C -0.03 -1.55 9.52 22.25 0.21 -1.34 16 26 C -0.20 -3.85 9.15 22.37 0.20 -3.65 16 27 C 0.14 2.60 11.18 84.63 0.95 3.54 16 28 N -0.55 -12.16 9.22 -308.94 -2.85 -15.01 16 29 H 0.06 0.86 8.10 -2.39 -0.02 0.85 16 30 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.41 10.73 4.95 -92.71 -0.46 10.27 16 37 H 0.12 4.18 6.37 -2.91 -0.02 4.16 16 38 H 0.11 5.58 6.16 -2.91 -0.02 5.56 16 39 H 0.30 12.30 8.29 -92.71 -0.77 11.53 16 40 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.10 4.73 7.63 -2.91 -0.02 4.71 16 42 H 0.15 2.39 7.01 -2.91 -0.02 2.37 16 43 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -62.97 367.17 2.57 -60.40 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.59 Total: 37.99 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 5.81 Total: -23.01 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -4.85 Total: -76.17 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.01 Total: -35.52 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 2.03 Total: 36.31 kcal Total: -62.97 2.57 -60.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359902262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.536 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds