Wall clock time and date at job start Tue Mar 31 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35671 * 116.99929 * 2 1 4 4 C 1.38926 * 119.68240 * 179.97438 * 3 2 1 5 5 C 1.38378 * 119.10784 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.75622 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47000 * 340.00427 * 6 5 4 8 8 C 1.52995 * 109.46986 * 100.00407 * 6 5 4 9 9 N 1.46507 * 109.47242 * 220.00624 * 6 5 4 10 10 C 1.34771 * 119.99717 * 154.99989 * 9 6 5 11 11 O 1.21549 * 120.00292 * 359.97438 * 10 9 6 12 12 C 1.47894 * 119.99578 * 180.02562 * 10 9 6 13 13 C 1.39917 * 120.02422 * 359.72262 * 12 10 9 14 14 C 1.38333 * 120.35620 * 179.71724 * 13 12 10 15 15 C 1.37754 * 120.40667 * 0.56336 * 14 13 12 16 16 C 1.40750 * 120.04371 * 359.71850 * 15 14 13 17 17 C 1.41436 * 120.17505 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00305 * 24.44035 * 17 16 15 19 19 C 1.39937 * 119.99474 * 204.43613 * 17 16 15 20 20 N 1.30827 * 120.00351 * 17.88489 * 19 17 16 21 21 Si 1.86800 * 119.99779 * 197.88032 * 19 17 16 22 22 H 1.48504 * 109.47200 * 90.00234 * 21 19 17 23 23 H 1.48504 * 109.47436 * 210.00198 * 21 19 17 24 24 H 1.48506 * 109.47119 * 330.00200 * 21 19 17 25 25 C 1.38993 * 120.02195 * 180.02562 * 12 10 9 26 26 C 1.38829 * 118.48798 * 0.02562 * 5 4 3 27 27 C 1.38043 * 119.29130 * 359.97438 * 26 5 4 28 28 N 1.31970 * 120.83396 * 359.75162 * 27 26 5 29 29 H 1.08998 * 109.47139 * 59.99837 * 1 2 3 30 30 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47081 * 299.99836 * 1 2 3 32 32 H 1.07996 * 120.44415 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.46840 * 180.02562 * 8 6 5 34 34 H 1.09000 * 109.47089 * 300.00057 * 8 6 5 35 35 H 1.09000 * 109.47235 * 60.00164 * 8 6 5 36 36 H 0.97003 * 119.99869 * 335.00091 * 9 6 5 37 37 H 1.07997 * 119.81966 * 359.97438 * 13 12 10 38 38 H 1.07993 * 119.79400 * 180.26182 * 14 13 12 39 39 H 1.08008 * 119.97653 * 179.74367 * 15 14 13 40 40 H 0.96996 * 120.00045 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.20499 * 359.97381 * 25 12 10 42 42 H 1.08001 * 120.35758 * 180.02562 * 26 5 4 43 43 H 1.07997 * 119.58716 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0485 2.5131 0.0000 6 6 5.5512 2.6269 0.0011 7 1 5.9861 1.6917 0.3537 8 6 6.0419 2.9141 -1.4192 9 7 5.9576 3.7195 0.8885 10 6 7.1832 3.7120 1.4491 11 8 7.9512 2.7984 1.2188 12 6 7.5931 4.8147 2.3453 13 6 6.7111 5.8689 2.6069 14 6 7.0853 6.9009 3.4488 15 6 8.3343 6.9086 4.0299 16 6 9.2372 5.8597 3.7738 17 6 10.5200 5.8645 4.3694 18 1 10.6868 6.4073 5.2880 19 6 11.5730 5.1659 3.7683 20 7 11.4883 4.8081 2.5127 21 14 13.0997 4.7443 4.7586 22 1 12.9197 3.4200 5.4061 23 1 14.2781 4.6979 3.8561 24 1 13.3151 5.7798 5.8011 25 6 8.8572 4.8077 2.9233 26 6 3.2505 3.6491 -0.0005 27 6 1.8771 3.5097 -0.0010 28 7 1.3186 2.3140 -0.0059 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0229 0.3695 0.0005 33 1 7.1289 2.9960 -1.4185 34 1 5.7396 2.1011 -2.0794 35 1 5.6070 3.8493 -1.7718 36 1 5.3445 4.4484 1.0726 37 1 5.7315 5.8748 2.1525 38 1 6.3958 7.7078 3.6477 39 1 8.6207 7.7199 4.6828 40 1 12.2184 4.3242 2.0960 41 1 9.5428 3.9983 2.7206 42 1 3.6993 4.6314 -0.0014 43 1 1.2517 4.3902 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360561914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:39 Heat of formation + Delta-G solvation = -22.401224 kcal Electronic energy + Delta-G solvation = -26291.485809 eV Core-core repulsion = 22494.565604 eV Total energy + Delta-G solvation = -3796.920204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95944 -39.43374 -38.21380 -37.11033 -35.55173 -33.78774 -32.43477 -30.93469 -30.51320 -29.51866 -29.20751 -27.49371 -25.37872 -24.54408 -23.69840 -22.70037 -21.13113 -20.76855 -19.63768 -18.37684 -17.62975 -17.32494 -16.35422 -16.22870 -15.90443 -15.57426 -15.10529 -14.81467 -14.57965 -14.44762 -14.26197 -13.88348 -13.68137 -13.46310 -13.17013 -12.83665 -12.63738 -12.53664 -12.43899 -12.11116 -11.86631 -11.68353 -11.43856 -11.25674 -11.18603 -11.11131 -10.74583 -10.52133 -10.05425 -9.92805 -9.87936 -9.72079 -9.24229 -9.07084 -8.80311 -8.73873 -7.66790 -7.55112 -6.82702 -4.43933 0.92250 1.01070 2.16776 2.79030 2.81732 3.06532 3.09657 3.13906 3.46638 3.65571 3.82204 3.90234 4.08193 4.36062 4.61023 4.77143 4.86628 4.92498 5.02107 5.04836 5.24950 5.27675 5.37980 5.49063 5.53852 5.58150 5.64570 5.76333 5.85544 6.02778 6.11076 6.15731 6.23516 6.27887 6.69067 6.77557 6.95919 6.98497 6.99199 7.18567 7.35083 7.61148 7.66339 7.71805 7.89107 8.03186 8.15613 8.47760 8.77515 8.80463 8.88105 10.11991 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002519 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.820018 B =11114.005806 C =11678.678109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.321 3.679 4 C -0.180 4.180 5 C -0.006 4.006 6 C 0.182 3.818 7 H 0.101 0.899 8 C -0.157 4.157 9 N -0.732 5.732 10 C 0.567 3.433 11 O -0.543 6.543 12 C -0.128 4.128 13 C -0.218 4.218 14 C -0.097 4.097 15 C -0.211 4.211 16 C 0.098 3.902 17 C -0.459 4.459 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.092 4.092 26 C -0.203 4.203 27 C 0.143 3.857 28 N -0.543 5.543 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.144 0.856 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.399 0.601 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.599 -4.592 -6.699 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.142 3.858 4 C -0.201 4.201 5 C -0.014 4.014 6 C 0.077 3.923 7 H 0.119 0.881 8 C -0.216 4.216 9 N -0.387 5.387 10 C 0.358 3.642 11 O -0.420 6.420 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.115 4.115 15 C -0.231 4.231 16 C 0.096 3.904 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.112 4.112 26 C -0.224 4.224 27 C -0.012 4.012 28 N -0.267 5.267 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.236 0.764 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.694 -5.727 -7.073 19.014 hybrid contribution 0.921 0.450 0.385 1.095 sum -15.773 -5.277 -6.688 17.927 Atomic orbital electron populations 1.22848 0.77248 1.02885 1.02437 1.86242 1.22896 1.24564 1.87846 1.19755 0.89172 0.84724 0.92115 1.20885 0.92015 0.99027 1.08132 1.20246 0.95980 0.92410 0.92762 1.19701 0.87874 0.93186 0.91533 0.88134 1.22166 1.02941 1.01916 0.94557 1.46075 1.17269 1.25632 1.49698 1.18860 0.80185 0.86137 0.78987 1.90699 1.51973 1.37203 1.62168 1.19436 0.96859 0.95191 1.01627 1.20315 0.98359 0.98178 1.06994 1.20433 0.96102 0.97164 0.97850 1.21104 0.95671 0.99491 1.06877 1.17608 0.92803 0.89532 0.90506 1.19602 0.93162 1.27534 1.08485 0.90033 1.25971 1.00638 0.93507 0.94508 1.69785 1.32806 1.27583 1.10506 0.86267 0.79873 0.80024 0.80341 1.19122 1.20208 1.18567 1.21644 0.93034 0.98931 0.97564 1.21829 0.94759 0.99579 1.06220 1.22364 0.92615 0.93624 0.92632 1.67311 1.40966 0.98845 1.19607 0.92333 0.88677 0.92298 0.83834 0.90797 0.91716 0.92167 0.76408 0.89357 0.88886 0.88603 0.90410 0.84784 0.84364 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.49 10.48 -18.72 -0.20 -3.69 16 3 C 0.32 3.88 7.49 -17.12 -0.13 3.76 16 4 C -0.18 -2.12 9.71 -39.28 -0.38 -2.50 16 5 C -0.01 -0.07 4.98 -104.35 -0.52 -0.59 16 6 C 0.18 2.48 2.81 -69.08 -0.19 2.28 16 7 H 0.10 1.50 7.47 -51.93 -0.39 1.11 16 8 C -0.16 -1.96 9.47 37.16 0.35 -1.61 16 9 N -0.73 -11.61 4.99 -55.86 -0.28 -11.89 16 10 C 0.57 11.98 7.74 -12.31 -0.10 11.88 16 11 O -0.54 -13.09 16.00 5.32 0.09 -13.01 16 12 C -0.13 -2.95 5.87 -105.04 -0.62 -3.57 16 13 C -0.22 -4.46 9.55 -38.92 -0.37 -4.83 16 14 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 15 C -0.21 -4.95 9.78 -38.81 -0.38 -5.33 16 16 C 0.10 2.56 5.57 -106.87 -0.60 1.96 16 17 C -0.46 -11.92 9.05 -37.73 -0.34 -12.26 16 18 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 19 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.78 -20.48 10.96 55.55 0.61 -19.87 16 21 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 25 C -0.09 -2.41 8.24 -38.44 -0.32 -2.72 16 26 C -0.20 -2.09 9.15 -39.43 -0.36 -2.45 16 27 C 0.14 1.41 11.18 -17.56 -0.20 1.21 16 28 N -0.54 -6.30 9.22 -13.33 -0.12 -6.42 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.11 -51.93 -0.42 0.05 16 32 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 5.51 4.97 -40.82 -0.20 5.31 16 37 H 0.09 1.47 6.38 -52.49 -0.33 1.14 16 38 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 40 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 41 H 0.13 3.81 5.74 -52.49 -0.30 3.51 16 42 H 0.14 1.20 7.01 -52.49 -0.37 0.84 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -30.44 367.42 -8.35 -38.79 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.37 Total: 11.02 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.58 Total: -14.07 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.21 Total: -38.18 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.11 Total: -16.70 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.44 -8.35 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360561914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.386 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds