Wall clock time and date at job start Tue Mar 31 2020 14:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35671 * 116.99929 * 2 1 4 4 C 1.38926 * 119.68240 * 179.97438 * 3 2 1 5 5 C 1.38378 * 119.10784 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.75622 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47000 * 340.00427 * 6 5 4 8 8 C 1.52995 * 109.46986 * 100.00407 * 6 5 4 9 9 N 1.46507 * 109.47242 * 220.00624 * 6 5 4 10 10 C 1.34771 * 119.99717 * 154.99989 * 9 6 5 11 11 O 1.21549 * 120.00292 * 359.97438 * 10 9 6 12 12 C 1.47894 * 119.99578 * 180.02562 * 10 9 6 13 13 C 1.39917 * 120.02422 * 359.72262 * 12 10 9 14 14 C 1.38333 * 120.35620 * 179.71724 * 13 12 10 15 15 C 1.37754 * 120.40667 * 0.56336 * 14 13 12 16 16 C 1.40750 * 120.04371 * 359.71850 * 15 14 13 17 17 C 1.41436 * 120.17505 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00305 * 24.44035 * 17 16 15 19 19 C 1.39937 * 119.99474 * 204.43613 * 17 16 15 20 20 N 1.30827 * 120.00351 * 17.88489 * 19 17 16 21 21 Si 1.86800 * 119.99779 * 197.88032 * 19 17 16 22 22 H 1.48504 * 109.47200 * 90.00234 * 21 19 17 23 23 H 1.48504 * 109.47436 * 210.00198 * 21 19 17 24 24 H 1.48506 * 109.47119 * 330.00200 * 21 19 17 25 25 C 1.38993 * 120.02195 * 180.02562 * 12 10 9 26 26 C 1.38829 * 118.48798 * 0.02562 * 5 4 3 27 27 C 1.38043 * 119.29130 * 359.97438 * 26 5 4 28 28 N 1.31970 * 120.83396 * 359.75162 * 27 26 5 29 29 H 1.08998 * 109.47139 * 59.99837 * 1 2 3 30 30 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47081 * 299.99836 * 1 2 3 32 32 H 1.07996 * 120.44415 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.46840 * 180.02562 * 8 6 5 34 34 H 1.09000 * 109.47089 * 300.00057 * 8 6 5 35 35 H 1.09000 * 109.47235 * 60.00164 * 8 6 5 36 36 H 0.97003 * 119.99869 * 335.00091 * 9 6 5 37 37 H 1.07997 * 119.81966 * 359.97438 * 13 12 10 38 38 H 1.07993 * 119.79400 * 180.26182 * 14 13 12 39 39 H 1.08008 * 119.97653 * 179.74367 * 15 14 13 40 40 H 0.96996 * 120.00045 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.20499 * 359.97381 * 25 12 10 42 42 H 1.08001 * 120.35758 * 180.02562 * 26 5 4 43 43 H 1.07997 * 119.58716 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0485 2.5131 0.0000 6 6 5.5512 2.6269 0.0011 7 1 5.9861 1.6917 0.3537 8 6 6.0419 2.9141 -1.4192 9 7 5.9576 3.7195 0.8885 10 6 7.1832 3.7120 1.4491 11 8 7.9512 2.7984 1.2188 12 6 7.5931 4.8147 2.3453 13 6 6.7111 5.8689 2.6069 14 6 7.0853 6.9009 3.4488 15 6 8.3343 6.9086 4.0299 16 6 9.2372 5.8597 3.7738 17 6 10.5200 5.8645 4.3694 18 1 10.6868 6.4073 5.2880 19 6 11.5730 5.1659 3.7683 20 7 11.4883 4.8081 2.5127 21 14 13.0997 4.7443 4.7586 22 1 12.9197 3.4200 5.4061 23 1 14.2781 4.6979 3.8561 24 1 13.3151 5.7798 5.8011 25 6 8.8572 4.8077 2.9233 26 6 3.2505 3.6491 -0.0005 27 6 1.8771 3.5097 -0.0010 28 7 1.3186 2.3140 -0.0059 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0229 0.3695 0.0005 33 1 7.1289 2.9960 -1.4185 34 1 5.7396 2.1011 -2.0794 35 1 5.6070 3.8493 -1.7718 36 1 5.3445 4.4484 1.0726 37 1 5.7315 5.8748 2.1525 38 1 6.3958 7.7078 3.6477 39 1 8.6207 7.7199 4.6828 40 1 12.2184 4.3242 2.0960 41 1 9.5428 3.9983 2.7206 42 1 3.6993 4.6314 -0.0014 43 1 1.2517 4.3902 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360561914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:38 Heat of formation + Delta-G solvation = -42.032964 kcal Electronic energy + Delta-G solvation = -26292.337105 eV Core-core repulsion = 22494.565604 eV Total energy + Delta-G solvation = -3797.771501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85551 -40.92081 -39.23771 -38.72553 -36.83083 -35.60753 -33.69133 -32.12814 -31.62168 -31.28391 -30.56809 -28.18076 -27.21671 -25.70037 -24.53567 -24.13029 -22.82402 -21.99842 -21.21491 -19.73337 -18.98996 -18.24335 -17.82661 -17.14235 -17.01175 -16.81383 -16.64375 -16.38536 -15.96409 -15.60395 -15.43016 -15.03063 -14.98017 -14.73049 -14.46845 -14.30507 -14.25986 -13.84782 -13.46687 -13.22966 -13.13380 -12.93042 -12.80970 -12.63376 -12.53756 -12.28630 -12.16834 -12.16302 -11.88262 -11.49631 -11.07898 -10.92931 -10.75021 -10.70155 -10.21064 -9.54707 -9.47371 -9.37580 -8.66410 -6.37502 0.07345 0.16486 0.38447 1.01665 1.36539 1.48279 1.50566 1.98633 2.09661 2.19213 2.26380 2.72712 2.79361 3.25789 3.46554 3.70802 3.87016 3.99008 4.05615 4.10352 4.24617 4.37851 4.43918 4.44089 4.44450 4.58669 4.63923 4.70317 4.75944 4.80928 4.87749 4.92707 5.09459 5.15669 5.19358 5.20511 5.31957 5.37852 5.48512 5.53395 5.86916 5.93308 6.06425 6.21043 6.29597 6.49339 6.66860 6.80116 6.88648 6.95339 7.28134 8.30301 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002519 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.820018 B =11114.005806 C =11678.678109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.323 6.323 3 C 0.309 3.691 4 C -0.192 4.192 5 C -0.011 4.011 6 C 0.184 3.816 7 H 0.081 0.919 8 C -0.152 4.152 9 N -0.707 5.707 10 C 0.565 3.435 11 O -0.584 6.584 12 C -0.138 4.138 13 C -0.196 4.196 14 C -0.095 4.095 15 C -0.217 4.217 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.083 0.917 19 C 0.029 3.971 20 N -0.824 5.824 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.251 1.251 25 C -0.131 4.131 26 C -0.201 4.201 27 C 0.146 3.854 28 N -0.552 5.552 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.056 0.944 32 H 0.145 0.855 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.412 0.588 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.286 0.714 41 H 0.099 0.901 42 H 0.160 0.840 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.551 -3.140 -6.924 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.130 3.870 4 C -0.213 4.213 5 C -0.019 4.019 6 C 0.079 3.921 7 H 0.099 0.901 8 C -0.210 4.210 9 N -0.362 5.362 10 C 0.355 3.645 11 O -0.464 6.464 12 C -0.142 4.142 13 C -0.216 4.216 14 C -0.113 4.113 15 C -0.237 4.237 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.101 0.899 19 C -0.186 4.186 20 N -0.450 5.450 21 Si 0.802 3.198 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.174 1.174 25 C -0.152 4.152 26 C -0.221 4.221 27 C -0.009 4.009 28 N -0.276 5.276 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.178 0.822 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.711 -4.256 -7.308 21.448 hybrid contribution 1.544 0.039 0.390 1.593 sum -18.167 -4.217 -6.918 19.892 Atomic orbital electron populations 1.23061 0.75660 1.04610 1.02381 1.86223 1.24546 1.24525 1.87777 1.19890 0.89330 0.85222 0.92526 1.20956 0.92338 0.99307 1.08656 1.20015 0.94481 0.93234 0.94165 1.19732 0.89439 0.91441 0.91472 0.90084 1.22111 1.01071 1.03680 0.94158 1.45827 1.15436 1.26340 1.48569 1.18699 0.81416 0.85276 0.79070 1.90681 1.53623 1.38553 1.63586 1.19750 0.96333 0.96662 1.01411 1.20855 0.99449 0.96115 1.05136 1.20933 0.95657 0.98242 0.96493 1.21416 0.96446 0.98914 1.06886 1.17956 0.93823 0.90544 0.91349 1.19859 0.94090 1.29476 1.09192 0.89865 1.26836 1.03632 0.92886 0.95203 1.69883 1.33933 1.28984 1.12168 0.85210 0.76028 0.79652 0.78899 1.19193 1.19400 1.17399 1.21452 0.94446 0.98942 1.00343 1.22063 0.94936 0.99767 1.05330 1.22959 0.92918 0.94050 0.91011 1.67388 1.41227 0.99291 1.19713 0.92157 0.86185 0.92478 0.83750 0.93645 0.89747 0.90394 0.74815 0.84429 0.84248 0.87431 0.90313 0.88299 0.82246 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.72 16 2 O -0.32 -6.97 10.48 -89.88 -0.94 -7.91 16 3 C 0.31 7.00 7.49 84.79 0.63 7.64 16 4 C -0.19 -4.31 9.71 22.47 0.22 -4.09 16 5 C -0.01 -0.23 4.98 -19.69 -0.10 -0.33 16 6 C 0.18 4.80 2.81 44.24 0.12 4.93 16 7 H 0.08 2.48 7.47 -2.39 -0.02 2.46 16 8 C -0.15 -3.61 9.47 71.98 0.68 -2.93 16 9 N -0.71 -21.24 4.99 -448.92 -2.24 -23.48 16 10 C 0.57 24.03 7.74 86.80 0.67 24.70 16 11 O -0.58 -29.51 16.00 -3.87 -0.06 -29.57 16 12 C -0.14 -6.38 5.87 -20.13 -0.12 -6.50 16 13 C -0.20 -7.37 9.55 22.70 0.22 -7.15 16 14 C -0.10 -3.65 10.01 22.18 0.22 -3.43 16 15 C -0.22 -9.96 9.78 22.77 0.22 -9.74 16 16 C 0.07 3.53 5.57 -21.32 -0.12 3.42 16 17 C -0.50 -26.97 9.05 23.47 0.21 -26.75 16 18 H 0.08 4.27 7.91 -2.91 -0.02 4.25 16 19 C 0.03 1.54 5.14 85.25 0.44 1.97 16 20 N -0.82 -45.84 10.96 21.82 0.24 -45.60 16 21 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.13 -7.22 8.24 23.01 0.19 -7.03 16 26 C -0.20 -3.37 9.15 22.36 0.20 -3.17 16 27 C 0.15 2.32 11.18 84.63 0.95 3.26 16 28 N -0.55 -11.38 9.22 -308.95 -2.85 -14.22 16 29 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.83 8.11 -2.39 -0.02 0.81 16 32 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.41 9.83 4.97 -92.71 -0.46 9.37 16 37 H 0.14 3.77 6.38 -2.91 -0.02 3.75 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 41 H 0.10 6.08 5.74 -2.91 -0.02 6.06 16 42 H 0.16 1.95 7.01 -2.91 -0.02 1.93 16 43 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -71.45 367.42 2.59 -68.87 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.58 Total: 33.68 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 5.82 Total: -23.47 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -4.85 Total: -83.30 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.00 Total: -37.48 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -71.45 2.59 -68.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360561914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.832 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds