Wall clock time and date at job start Tue Mar 31 2020 15:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47343 * 2 1 4 4 C 1.46505 * 120.00330 * 273.35819 * 3 2 1 5 5 C 1.50702 * 109.46702 * 269.99734 * 4 3 2 6 6 H 1.08007 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99444 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00259 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47036 * 89.99705 * 9 7 5 11 11 H 1.48503 * 109.47322 * 209.99679 * 9 7 5 12 12 H 1.48503 * 109.47025 * 329.99822 * 9 7 5 13 13 C 1.34781 * 120.00150 * 93.34922 * 3 2 1 14 14 O 1.21547 * 120.00355 * 175.16051 * 13 3 2 15 15 C 1.47835 * 119.99566 * 355.16746 * 13 3 2 16 16 C 1.39944 * 120.96614 * 59.03377 * 15 13 3 17 17 C 1.37969 * 119.07451 * 180.02562 * 16 15 13 18 18 N 1.31921 * 121.07760 * 359.97438 * 17 16 15 19 19 C 1.31625 * 122.14629 * 359.72707 * 18 17 16 20 20 C 1.38960 * 120.79244 * 0.54221 * 19 18 17 21 21 O 1.35651 * 120.58184 * 179.75645 * 20 19 18 22 22 C 1.35878 * 118.00436 * 93.22392 * 21 20 19 23 23 C 1.38758 * 120.05958 * 175.81761 * 22 21 20 24 24 C 1.38133 * 119.94207 * 180.27913 * 23 22 21 25 25 C 1.38277 * 120.05757 * 359.47002 * 24 23 22 26 26 C 1.38267 * 120.11539 * 0.55368 * 25 24 23 27 27 C 1.38144 * 120.05798 * 359.70182 * 26 25 24 28 28 H 1.09004 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46421 * 299.99327 * 1 2 3 30 30 H 1.08995 * 109.47308 * 59.99245 * 1 2 3 31 31 H 1.09002 * 109.46414 * 240.00211 * 2 1 3 32 32 H 1.08995 * 109.47308 * 120.00755 * 2 1 3 33 33 H 1.08998 * 109.46806 * 29.99447 * 4 3 2 34 34 H 1.08998 * 109.47500 * 150.00150 * 4 3 2 35 35 H 0.97006 * 119.99591 * 180.02562 * 8 7 5 36 36 H 1.08001 * 120.46627 * 359.97438 * 16 15 13 37 37 H 1.08001 * 119.46579 * 179.97438 * 17 16 15 38 38 H 1.08002 * 119.60477 * 180.27033 * 19 18 17 39 39 H 1.07995 * 120.02863 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.96815 * 179.72433 * 24 23 22 41 41 H 1.07998 * 119.94024 * 180.25196 * 25 24 23 42 42 H 1.07994 * 119.97155 * 179.72161 * 26 25 24 43 43 H 1.08000 * 120.02479 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1926 2.0966 -1.2665 5 6 3.5896 1.8691 -1.7839 6 1 4.2789 1.2535 -1.2250 7 6 3.9881 2.4476 -2.9703 8 7 3.1489 3.1976 -3.6506 9 14 5.7199 2.1662 -3.6113 10 1 5.7365 0.9622 -4.4804 11 1 6.1557 3.3492 -4.3960 12 1 6.6444 1.9634 -2.4669 13 6 2.3074 1.9938 1.1652 14 8 2.7952 3.1071 1.1620 15 6 2.0311 1.3116 2.4473 16 6 2.6195 0.0779 2.7479 17 6 2.3339 -0.5245 3.9559 18 7 1.5199 0.0438 4.8246 19 6 0.9466 1.2054 4.5911 20 6 1.1713 1.8827 3.3987 21 8 0.5744 3.0773 3.1605 22 6 1.2562 4.2070 3.4847 23 6 0.7238 5.4517 3.1802 24 6 1.4216 6.5985 3.5057 25 6 2.6447 6.5072 4.1443 26 6 3.1778 5.2682 4.4484 27 6 2.4864 4.1181 4.1204 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.4707 1.7270 -1.9948 34 1 2.0337 3.1630 -1.1063 35 1 3.4292 3.6044 -4.4855 36 1 3.2871 -0.3964 2.0438 37 1 2.7842 -1.4768 4.1942 38 1 0.2904 1.6353 5.3334 39 1 -0.2331 5.5236 2.6848 40 1 1.0096 7.5674 3.2649 41 1 3.1868 7.4052 4.4015 42 1 4.1353 5.1995 4.9432 43 1 2.9035 3.1506 4.3578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442301162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:47 Heat of formation + Delta-G solvation = 12.334238 kcal Electronic energy + Delta-G solvation = -28020.995357 eV Core-core repulsion = 24225.581396 eV Total energy + Delta-G solvation = -3795.413962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35459 -39.53409 -38.64433 -37.50185 -35.40056 -33.11533 -32.28103 -31.30316 -30.65004 -30.15004 -29.49938 -27.37675 -24.85959 -24.17538 -23.13063 -22.52815 -22.49346 -21.76943 -19.40715 -18.57506 -17.41248 -16.95925 -16.76091 -16.41518 -15.89899 -15.77202 -15.22675 -14.65112 -14.49157 -14.32495 -14.03321 -13.89387 -13.87371 -13.40348 -13.35857 -13.29605 -13.06902 -12.57297 -12.16286 -12.03335 -11.74544 -11.60995 -11.53556 -11.29079 -10.95822 -10.94534 -10.80270 -10.64211 -10.19130 -10.00937 -9.81703 -9.69142 -9.14717 -9.03248 -8.84216 -8.47666 -8.13883 -7.77570 -6.08628 -4.13590 0.64600 0.82097 1.49031 1.55572 3.01331 3.19900 3.26927 3.34008 3.37781 3.56137 3.75490 3.92007 4.24791 4.39757 4.60770 4.66662 4.82705 4.92205 4.98682 5.04490 5.22613 5.25810 5.28085 5.39047 5.48189 5.55211 5.58905 5.60923 5.74030 5.77208 5.88226 6.00836 6.09130 6.18455 6.25797 6.39942 6.45644 6.51028 6.63156 6.91928 6.96528 7.35615 7.42816 7.51771 7.68530 7.86471 8.16544 8.24833 8.77319 8.93647 9.51247 10.99555 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.004870 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.782871 B = 5748.415720 C = 7256.143688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.583 5.583 4 C 0.249 3.751 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.545 3.455 14 O -0.511 6.511 15 C -0.071 4.071 16 C -0.136 4.136 17 C 0.096 3.904 18 N -0.463 5.463 19 C 0.098 3.902 20 C 0.068 3.932 21 O -0.252 6.252 22 C 0.138 3.862 23 C -0.140 4.140 24 C -0.084 4.084 25 C -0.153 4.153 26 C -0.082 4.082 27 C -0.174 4.174 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -3.507 16.194 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.029 4.029 3 N -0.314 5.314 4 C 0.130 3.870 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.330 3.670 14 O -0.387 6.387 15 C -0.083 4.083 16 C -0.156 4.156 17 C -0.060 4.060 18 N -0.174 5.174 19 C -0.061 4.061 20 C 0.022 3.978 21 O -0.163 6.163 22 C 0.096 3.904 23 C -0.158 4.158 24 C -0.102 4.102 25 C -0.172 4.172 26 C -0.100 4.100 27 C -0.193 4.193 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.066 -3.192 16.650 17.694 hybrid contribution 1.275 0.063 -1.426 1.914 sum -3.791 -3.129 15.224 15.998 Atomic orbital electron populations 1.22176 0.96529 1.01460 1.02409 1.21699 0.94040 0.84101 1.03037 1.48202 1.62476 1.13411 1.07354 1.19326 0.96909 0.93098 0.77632 1.21381 0.97839 1.31181 1.06120 0.92464 1.24925 0.97647 0.94837 0.96600 1.69933 1.35268 1.32358 1.15656 0.86496 0.84408 0.77700 0.78821 1.20589 1.21038 1.19910 1.17827 0.80214 0.86052 0.82947 1.90840 1.42581 1.18751 1.86488 1.21253 0.94736 0.95465 0.96823 1.22375 1.00479 0.93873 0.98903 1.22779 0.94084 0.99713 0.89384 1.67609 1.07693 1.09433 1.32639 1.23070 0.97753 0.91513 0.93770 1.19696 0.96370 0.87418 0.94283 1.84246 1.41826 1.10455 1.79778 1.19003 0.91416 0.85120 0.94892 1.20360 1.02042 0.89334 1.04105 1.20890 0.94666 0.97488 0.97200 1.21023 0.96695 0.97475 1.01977 1.20863 0.98838 0.91929 0.98394 1.21078 0.95205 0.99469 1.03530 0.92109 0.93195 0.91877 0.89634 0.91130 0.94687 0.93876 0.92659 0.83201 0.81642 0.81669 0.85267 0.85391 0.86048 0.86018 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.09 1.54 5.94 -4.04 -0.02 1.52 16 3 N -0.58 -12.37 2.46 -176.18 -0.43 -12.80 16 4 C 0.25 6.47 5.14 -5.19 -0.03 6.44 16 5 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.55 11.61 6.82 -12.33 -0.08 11.53 16 14 O -0.51 -12.95 15.32 5.32 0.08 -12.87 16 15 C -0.07 -1.18 4.95 -104.53 -0.52 -1.69 16 16 C -0.14 -1.77 7.74 -39.04 -0.30 -2.07 16 17 C 0.10 1.05 11.16 -17.61 -0.20 0.85 16 18 N -0.46 -5.70 10.33 -13.16 -0.14 -5.83 16 19 C 0.10 1.24 11.04 -17.37 -0.19 1.05 16 20 C 0.07 1.05 4.01 -38.51 -0.15 0.90 16 21 O -0.25 -4.29 9.52 -2.78 -0.03 -4.32 16 22 C 0.14 2.31 5.60 -39.20 -0.22 2.09 16 23 C -0.14 -2.14 9.99 -39.43 -0.39 -2.54 16 24 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 25 C -0.15 -2.02 10.04 -39.56 -0.40 -2.41 16 26 C -0.08 -1.16 10.04 -39.61 -0.40 -1.56 16 27 C -0.17 -2.78 8.89 -39.42 -0.35 -3.13 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.07 0.96 4.23 -51.93 -0.22 0.74 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.04 1.27 7.49 -51.93 -0.39 0.88 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.15 1.75 7.24 -52.49 -0.38 1.37 16 37 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.12 1.85 6.70 -52.49 -0.35 1.50 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -33.97 368.98 -8.46 -42.43 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.53 Total: 2.77 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.69 Total: -5.99 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.17 Total: -44.28 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.06 Total: -17.19 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.97 -8.46 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442301162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.763 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds