Wall clock time and date at job start Tue Mar 31 2020 15:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47343 * 2 1 4 4 C 1.46505 * 120.00330 * 273.35819 * 3 2 1 5 5 C 1.50702 * 109.46702 * 269.99734 * 4 3 2 6 6 H 1.08007 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99444 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00259 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47036 * 89.99705 * 9 7 5 11 11 H 1.48503 * 109.47322 * 209.99679 * 9 7 5 12 12 H 1.48503 * 109.47025 * 329.99822 * 9 7 5 13 13 C 1.34781 * 120.00150 * 93.34922 * 3 2 1 14 14 O 1.21547 * 120.00355 * 175.16051 * 13 3 2 15 15 C 1.47835 * 119.99566 * 355.16746 * 13 3 2 16 16 C 1.39944 * 120.96614 * 59.03377 * 15 13 3 17 17 C 1.37969 * 119.07451 * 180.02562 * 16 15 13 18 18 N 1.31921 * 121.07760 * 359.97438 * 17 16 15 19 19 C 1.31625 * 122.14629 * 359.72707 * 18 17 16 20 20 C 1.38960 * 120.79244 * 0.54221 * 19 18 17 21 21 O 1.35651 * 120.58184 * 179.75645 * 20 19 18 22 22 C 1.35878 * 118.00436 * 93.22392 * 21 20 19 23 23 C 1.38758 * 120.05958 * 175.81761 * 22 21 20 24 24 C 1.38133 * 119.94207 * 180.27913 * 23 22 21 25 25 C 1.38277 * 120.05757 * 359.47002 * 24 23 22 26 26 C 1.38267 * 120.11539 * 0.55368 * 25 24 23 27 27 C 1.38144 * 120.05798 * 359.70182 * 26 25 24 28 28 H 1.09004 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46421 * 299.99327 * 1 2 3 30 30 H 1.08995 * 109.47308 * 59.99245 * 1 2 3 31 31 H 1.09002 * 109.46414 * 240.00211 * 2 1 3 32 32 H 1.08995 * 109.47308 * 120.00755 * 2 1 3 33 33 H 1.08998 * 109.46806 * 29.99447 * 4 3 2 34 34 H 1.08998 * 109.47500 * 150.00150 * 4 3 2 35 35 H 0.97006 * 119.99591 * 180.02562 * 8 7 5 36 36 H 1.08001 * 120.46627 * 359.97438 * 16 15 13 37 37 H 1.08001 * 119.46579 * 179.97438 * 17 16 15 38 38 H 1.08002 * 119.60477 * 180.27033 * 19 18 17 39 39 H 1.07995 * 120.02863 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.96815 * 179.72433 * 24 23 22 41 41 H 1.07998 * 119.94024 * 180.25196 * 25 24 23 42 42 H 1.07994 * 119.97155 * 179.72161 * 26 25 24 43 43 H 1.08000 * 120.02479 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1926 2.0966 -1.2665 5 6 3.5896 1.8691 -1.7839 6 1 4.2789 1.2535 -1.2250 7 6 3.9881 2.4476 -2.9703 8 7 3.1489 3.1976 -3.6506 9 14 5.7199 2.1662 -3.6113 10 1 5.7365 0.9622 -4.4804 11 1 6.1557 3.3492 -4.3960 12 1 6.6444 1.9634 -2.4669 13 6 2.3074 1.9938 1.1652 14 8 2.7952 3.1071 1.1620 15 6 2.0311 1.3116 2.4473 16 6 2.6195 0.0779 2.7479 17 6 2.3339 -0.5245 3.9559 18 7 1.5199 0.0438 4.8246 19 6 0.9466 1.2054 4.5911 20 6 1.1713 1.8827 3.3987 21 8 0.5744 3.0773 3.1605 22 6 1.2562 4.2070 3.4847 23 6 0.7238 5.4517 3.1802 24 6 1.4216 6.5985 3.5057 25 6 2.6447 6.5072 4.1443 26 6 3.1778 5.2682 4.4484 27 6 2.4864 4.1181 4.1204 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.4707 1.7270 -1.9948 34 1 2.0337 3.1630 -1.1063 35 1 3.4292 3.6044 -4.4855 36 1 3.2871 -0.3964 2.0438 37 1 2.7842 -1.4768 4.1942 38 1 0.2904 1.6353 5.3334 39 1 -0.2331 5.5236 2.6848 40 1 1.0096 7.5674 3.2649 41 1 3.1868 7.4052 4.4015 42 1 4.1353 5.1995 4.9432 43 1 2.9035 3.1506 4.3578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442301162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:46 Heat of formation + Delta-G solvation = -8.117480 kcal Electronic energy + Delta-G solvation = -28021.882210 eV Core-core repulsion = 24225.581396 eV Total energy + Delta-G solvation = -3796.300815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52548 -40.78374 -40.06607 -38.60650 -37.08738 -35.04750 -33.65306 -32.37096 -31.74444 -31.67926 -30.60397 -29.27659 -26.33434 -25.28794 -24.79146 -23.91937 -23.62961 -22.93410 -20.84115 -19.72496 -18.84829 -18.46434 -18.23221 -17.87219 -17.46548 -16.93873 -16.66580 -16.21357 -15.72767 -15.57287 -15.39316 -15.14696 -15.03596 -14.75456 -14.56829 -14.46555 -14.35823 -14.25837 -13.71180 -13.43414 -13.25801 -13.18104 -12.75414 -12.71611 -12.59386 -12.57905 -12.24204 -12.03225 -12.02371 -11.77051 -11.31717 -10.99297 -10.66531 -10.47951 -10.15762 -9.97177 -9.56844 -9.27452 -8.25615 -6.40499 -0.45620 -0.23640 0.36826 0.43267 1.34683 1.37931 1.47924 1.61133 1.94936 2.12109 2.37933 2.59649 2.80353 3.04277 3.27008 3.35222 3.57385 3.77235 3.85201 3.89381 3.98503 4.03743 4.21117 4.29329 4.37287 4.45229 4.47358 4.51642 4.56648 4.73258 4.81877 4.83983 4.86388 4.95930 5.01047 5.12782 5.25642 5.26057 5.32843 5.42431 5.50059 5.53298 5.75230 5.86676 6.00016 6.38485 6.55194 6.67867 6.68010 7.14987 7.32587 8.82081 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.004870 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.782871 B = 5748.415720 C = 7256.143688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.089 3.911 3 N -0.589 5.589 4 C 0.267 3.733 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.541 3.459 14 O -0.565 6.565 15 C -0.090 4.090 16 C -0.134 4.134 17 C 0.118 3.882 18 N -0.463 5.463 19 C 0.109 3.891 20 C 0.052 3.948 21 O -0.271 6.271 22 C 0.115 3.885 23 C -0.165 4.165 24 C -0.086 4.086 25 C -0.155 4.155 26 C -0.092 4.092 27 C -0.190 4.190 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.025 0.975 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.165 0.835 37 H 0.213 0.787 38 H 0.187 0.813 39 H 0.131 0.869 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 -5.511 17.846 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.032 4.032 3 N -0.320 5.320 4 C 0.146 3.854 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.328 3.672 14 O -0.444 6.444 15 C -0.102 4.102 16 C -0.154 4.154 17 C -0.038 4.038 18 N -0.173 5.173 19 C -0.049 4.049 20 C 0.006 3.994 21 O -0.182 6.182 22 C 0.073 3.927 23 C -0.184 4.184 24 C -0.104 4.104 25 C -0.173 4.173 26 C -0.110 4.110 27 C -0.209 4.209 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.043 0.957 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.182 0.818 37 H 0.230 0.770 38 H 0.204 0.796 39 H 0.149 0.851 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.945 -5.244 18.323 19.463 hybrid contribution 0.887 0.680 -1.890 2.196 sum -3.057 -4.564 16.434 17.327 Atomic orbital electron populations 1.22105 0.95066 1.03476 1.01049 1.22018 0.95248 0.81448 1.04532 1.48186 1.62657 1.15141 1.05987 1.18738 0.96114 0.90849 0.79690 1.21634 0.98535 1.31304 1.06437 0.92625 1.25864 1.02037 0.94338 0.96809 1.70061 1.37420 1.33164 1.16128 0.85399 0.78828 0.78235 0.78257 1.18576 1.20729 1.19729 1.18519 0.78770 0.85565 0.84365 1.90787 1.44844 1.21226 1.87549 1.20924 0.97273 0.97208 0.94790 1.22584 1.00105 0.92485 1.00226 1.23461 0.92267 1.00429 0.87594 1.67761 1.07784 1.08948 1.32764 1.23326 0.97404 0.91292 0.92869 1.19935 0.97105 0.87200 0.95156 1.84206 1.42549 1.11185 1.80292 1.19307 0.92152 0.85489 0.95776 1.20680 1.02796 0.89920 1.04987 1.21313 0.94704 0.98076 0.96285 1.21449 0.96575 0.98320 1.00938 1.21254 0.99627 0.91873 0.98221 1.21166 0.95352 1.00005 1.04369 0.88274 0.93849 0.93943 0.89803 0.87855 0.95720 0.98845 0.92368 0.81765 0.77021 0.79644 0.85084 0.82480 0.82835 0.83767 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 10.24 71.98 0.74 -3.76 16 2 C 0.09 2.86 5.94 86.38 0.51 3.38 16 3 N -0.59 -25.99 2.46 -829.58 -2.04 -28.03 16 4 C 0.27 14.71 5.14 85.63 0.44 15.15 16 5 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 6 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 9 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.54 24.02 6.82 86.78 0.59 24.62 16 14 O -0.56 -30.47 15.32 -3.86 -0.06 -30.53 16 15 C -0.09 -2.99 4.95 -19.80 -0.10 -3.09 16 16 C -0.13 -3.16 7.74 22.62 0.18 -2.98 16 17 C 0.12 2.11 11.16 84.62 0.94 3.05 16 18 N -0.46 -9.88 10.33 -195.55 -2.02 -11.90 16 19 C 0.11 2.61 11.04 84.90 0.94 3.55 16 20 C 0.05 1.60 4.01 22.96 0.09 1.70 16 21 O -0.27 -9.70 9.52 -32.86 -0.31 -10.02 16 22 C 0.11 4.04 5.60 22.52 0.13 4.16 16 23 C -0.17 -5.32 9.99 22.37 0.22 -5.10 16 24 C -0.09 -2.30 10.04 22.25 0.22 -2.07 16 25 C -0.15 -3.92 10.04 22.29 0.22 -3.70 16 26 C -0.09 -2.58 10.04 22.25 0.22 -2.36 16 27 C -0.19 -6.26 8.89 22.37 0.20 -6.06 16 28 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 32 H 0.10 2.61 4.23 -2.39 -0.01 2.60 16 33 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 34 H -0.01 -0.42 7.49 -2.39 -0.02 -0.44 16 35 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 36 H 0.16 3.36 7.24 -2.91 -0.02 3.34 16 37 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 41 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.11 3.67 6.70 -2.91 -0.02 3.65 16 Total: -1.00 -79.12 368.98 5.16 -73.96 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.02 Total: 19.39 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.25 Total: -3.55 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -3.77 Total: -96.11 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.37 Total: -40.55 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -79.12 5.16 -73.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442301162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.846 kcal (2) G-P(sol) polarization free energy of solvation -79.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds