Wall clock time and date at job start Tue Mar 31 2020 15:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46984 * 166.24303 * 3 2 1 5 5 C 1.37103 * 119.99951 * 275.92861 * 4 3 2 6 6 H 1.07997 * 119.99380 * 140.03438 * 5 4 3 7 7 C 1.38943 * 120.00032 * 320.31451 * 5 4 3 8 8 N 1.31411 * 119.99973 * 165.34746 * 7 5 4 9 9 Si 1.86807 * 120.00119 * 345.34747 * 7 5 4 10 10 H 1.48499 * 109.46885 * 91.44572 * 9 7 5 11 11 H 1.48503 * 109.47038 * 211.44443 * 9 7 5 12 12 H 1.48496 * 109.46916 * 331.44332 * 9 7 5 13 13 C 1.34772 * 119.99953 * 95.92999 * 4 3 2 14 14 O 1.21294 * 120.00040 * 175.59477 * 13 4 3 15 15 C 1.50706 * 120.00098 * 355.60193 * 13 4 3 16 16 H 1.08994 * 109.46939 * 34.68750 * 15 13 4 17 17 C 1.53006 * 109.46530 * 274.68921 * 15 13 4 18 18 N 1.46501 * 109.47337 * 154.69229 * 15 13 4 19 19 C 1.34775 * 119.99633 * 204.99659 * 18 15 13 20 20 O 1.21689 * 120.00218 * 359.97438 * 19 18 15 21 21 C 1.46430 * 119.99458 * 179.97438 * 19 18 15 22 22 C 1.34814 * 119.99873 * 179.97438 * 21 19 18 23 23 C 1.47204 * 120.00168 * 180.02562 * 22 21 19 24 24 C 1.39836 * 120.16577 * 359.72443 * 23 22 21 25 25 C 1.37903 * 119.81994 * 179.71944 * 24 23 22 26 26 C 1.38400 * 120.16972 * 0.58189 * 25 24 23 27 27 C 1.38394 * 120.34871 * 359.69655 * 26 25 24 28 28 C 1.37893 * 120.16958 * 0.02562 * 27 26 25 29 29 H 4.40641 * 5.51381 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.46954 * 46.24429 * 3 2 1 31 31 H 1.08998 * 109.47063 * 286.23937 * 3 2 1 32 32 H 0.96995 * 120.00251 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47122 * 300.18392 * 17 15 13 34 34 H 1.08991 * 109.47247 * 60.19143 * 17 15 13 35 35 H 1.08999 * 109.46815 * 180.19009 * 17 15 13 36 36 H 0.96999 * 120.00142 * 24.99366 * 18 15 13 37 37 H 1.07993 * 120.00473 * 0.02562 * 21 19 18 38 38 H 1.08001 * 119.99462 * 0.02562 * 22 21 19 39 39 H 1.07993 * 120.09324 * 0.02562 * 24 23 22 40 40 H 1.07997 * 119.90916 * 180.29827 * 25 24 23 41 41 H 1.08003 * 119.82336 * 179.71322 * 26 25 24 42 42 H 1.07993 * 119.91873 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.08759 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3425 -0.3285 5 6 3.2464 1.7292 -1.6390 6 1 2.9689 2.7309 -1.9321 7 6 3.7122 0.8306 -2.5909 8 7 3.5541 1.0875 -3.8699 9 14 4.5632 -0.7429 -2.0525 10 1 3.5592 -1.8295 -1.9239 11 1 5.5807 -1.1263 -3.0639 12 1 5.2260 -0.5236 -0.7419 13 6 3.4717 2.1968 0.6576 14 8 3.9504 3.2777 0.3861 15 6 3.2549 1.8090 2.0977 16 1 3.4240 0.7387 2.2152 17 6 1.8195 2.1465 2.5061 18 7 4.1911 2.5477 2.9486 19 6 4.5515 2.0469 4.1469 20 8 4.0989 0.9815 4.5222 21 6 5.4878 2.7850 4.9971 22 6 5.8479 2.2844 6.1960 23 6 6.7886 3.0266 7.0510 24 6 7.3154 4.2484 6.6207 25 6 8.1916 4.9405 7.4299 26 6 8.5592 4.4230 8.6597 27 6 8.0467 3.2116 9.0901 28 6 7.1651 2.5103 8.2948 29 1 -1.0502 -0.0004 0.0003 30 1 3.0097 -0.7099 -0.7423 31 1 3.0095 -0.2866 0.9866 32 1 3.8796 0.4604 -4.5344 33 1 1.6494 3.2164 2.3854 34 1 1.1229 1.5944 1.8753 35 1 1.6636 1.8692 3.5486 36 1 4.5517 3.3971 2.6496 37 1 5.8891 3.7307 4.6643 38 1 5.4461 1.3388 6.5290 39 1 7.0329 4.6513 5.6594 40 1 8.5955 5.8866 7.1011 41 1 9.2495 4.9675 9.2870 42 1 8.3380 2.8144 10.0512 43 1 6.7657 1.5653 8.6322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:22 Heat of formation + Delta-G solvation = 49.340137 kcal Electronic energy + Delta-G solvation = -26159.385365 eV Core-core repulsion = 22365.576099 eV Total energy + Delta-G solvation = -3793.809266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.08518 -39.45406 -38.68437 -35.69054 -34.69777 -34.15217 -32.69630 -31.72054 -31.33939 -30.80582 -29.41023 -26.92465 -25.62591 -24.76764 -23.20958 -22.73977 -21.10660 -19.72985 -19.02443 -18.56861 -17.83729 -17.02124 -16.78911 -16.36848 -15.84530 -15.61023 -15.28845 -15.05917 -14.78644 -14.33248 -14.17813 -13.70688 -13.65816 -13.58387 -13.27294 -13.15431 -12.92328 -12.85002 -12.32549 -12.28313 -12.06467 -11.90959 -11.56451 -11.30801 -11.23705 -11.04074 -10.73013 -10.57390 -10.28761 -9.89906 -9.81782 -9.54565 -9.29605 -9.20962 -9.04744 -8.62639 -8.47161 -8.02662 -6.46355 -4.13197 0.31943 1.07769 1.81594 2.92859 3.09329 3.12260 3.13716 3.19969 3.29428 3.33733 3.57884 3.65233 4.04277 4.34402 4.45885 4.47607 4.62584 4.74908 4.75612 4.99021 5.01662 5.05310 5.09087 5.19774 5.26259 5.33996 5.49480 5.60168 5.66687 5.69986 5.81868 5.85718 5.96361 5.98476 6.06287 6.16446 6.21766 6.35804 6.38948 6.39732 6.58250 6.62445 7.39847 7.70401 8.06112 8.12821 8.29220 8.36953 8.77133 9.14939 9.51643 10.65020 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.002527 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.765524 B =11076.142624 C =11546.395982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.183 3.817 4 N -0.454 5.454 5 C -0.314 4.314 6 H 0.108 0.892 7 C 0.062 3.938 8 N -0.862 5.862 9 Si 0.876 3.124 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.469 3.531 14 O -0.553 6.553 15 C 0.122 3.878 16 H 0.101 0.899 17 C -0.156 4.156 18 N -0.701 5.701 19 C 0.546 3.454 20 O -0.551 6.551 21 C -0.198 4.198 22 C -0.031 4.031 23 C -0.070 4.070 24 C -0.103 4.103 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.124 4.124 28 C -0.098 4.098 29 H 0.214 0.786 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.276 0.724 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.411 0.589 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 1.976 22.201 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C 0.061 3.939 4 N -0.175 5.175 5 C -0.441 4.441 6 H 0.125 0.875 7 C -0.144 4.144 8 N -0.498 5.498 9 Si 0.704 3.296 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.186 1.186 13 C 0.256 3.744 14 O -0.434 6.434 15 C 0.013 3.987 16 H 0.119 0.881 17 C -0.214 4.214 18 N -0.353 5.353 19 C 0.335 3.665 20 O -0.431 6.431 21 C -0.218 4.218 22 C -0.051 4.051 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.142 4.142 28 C -0.116 4.116 29 H 0.231 0.769 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.050 1.746 22.039 22.677 hybrid contribution 0.346 -0.504 -0.223 0.651 sum 5.397 1.241 21.816 22.507 Atomic orbital electron populations 1.24711 0.95618 1.00444 1.02112 1.23480 0.94628 1.00128 0.99249 1.19078 0.84610 0.88655 1.01583 1.43636 1.56142 1.11157 1.06585 1.19036 1.43743 1.01734 0.79607 0.87464 1.25361 0.95611 0.98495 0.94945 1.69663 1.42804 1.37274 1.00069 0.86989 0.80046 0.82992 0.79574 1.19705 1.20979 1.18565 1.20140 0.81602 0.86793 0.85841 1.90559 1.46534 1.22890 1.83440 1.20911 0.90383 0.97947 0.89418 0.88110 1.22085 0.94485 1.02690 1.02160 1.45715 1.46391 1.25483 1.17677 1.18280 0.81393 0.85376 0.81472 1.90786 1.56474 1.22592 1.73294 1.22976 1.01066 1.01696 0.96076 1.22336 0.92253 0.98173 0.92304 1.19082 0.97956 0.95159 0.94844 1.21508 0.96516 0.94177 0.99889 1.21136 0.98095 1.00136 0.94590 1.21311 0.99514 0.95999 0.96359 1.21110 0.97735 0.95390 0.99947 1.21400 0.97108 0.99743 0.93351 0.76873 0.89358 0.88824 0.91342 0.91914 0.90646 0.91638 0.75235 0.85178 0.84549 0.85269 0.85674 0.85966 0.85769 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.52 18.95 29.55 0.56 -2.96 16 2 C -0.17 -3.37 11.91 -37.12 -0.44 -3.81 16 3 C 0.18 3.79 4.71 -6.83 -0.03 3.76 16 4 N -0.45 -10.89 2.16 -117.93 -0.25 -11.14 16 5 C -0.31 -8.75 9.31 -14.93 -0.14 -8.89 16 6 H 0.11 3.34 8.00 -52.49 -0.42 2.92 16 7 C 0.06 1.71 5.42 -17.47 -0.09 1.61 16 8 N -0.86 -24.70 13.96 55.50 0.77 -23.92 16 9 Si 0.88 20.24 24.77 -169.99 -4.21 16.03 16 10 H -0.27 -5.82 6.66 56.52 0.38 -5.44 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.26 -5.90 7.09 56.52 0.40 -5.50 16 13 C 0.47 10.60 6.83 -10.98 -0.08 10.53 16 14 O -0.55 -14.01 15.94 5.54 0.09 -13.93 16 15 C 0.12 2.22 2.35 -69.08 -0.16 2.06 16 16 H 0.10 1.84 5.35 -51.93 -0.28 1.56 16 17 C -0.16 -2.54 9.47 37.16 0.35 -2.19 16 18 N -0.70 -11.35 5.05 -56.32 -0.28 -11.64 16 19 C 0.55 8.41 7.71 -12.96 -0.10 8.31 16 20 O -0.55 -9.95 15.89 5.20 0.08 -9.86 16 21 C -0.20 -2.33 9.41 -37.50 -0.35 -2.69 16 22 C -0.03 -0.34 9.46 -37.16 -0.35 -0.69 16 23 C -0.07 -0.68 5.87 -105.06 -0.62 -1.30 16 24 C -0.10 -0.92 9.41 -39.11 -0.37 -1.29 16 25 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 26 C -0.11 -0.82 10.04 -39.46 -0.40 -1.21 16 27 C -0.12 -0.91 10.03 -39.65 -0.40 -1.31 16 28 C -0.10 -0.83 9.80 -39.11 -0.38 -1.21 16 29 H 0.21 2.62 7.80 -54.08 -0.42 2.20 16 30 H 0.09 1.91 2.59 -51.93 -0.13 1.78 16 31 H 0.09 1.67 5.68 -51.93 -0.29 1.37 16 32 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.24 5.94 -51.93 -0.31 0.93 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.41 6.31 7.76 -40.82 -0.32 5.99 16 37 H 0.13 1.24 6.07 -52.49 -0.32 0.92 16 38 H 0.14 1.51 7.52 -52.49 -0.39 1.12 16 39 H 0.13 1.00 6.17 -52.49 -0.32 0.68 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -33.28 369.04 -6.55 -39.83 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.91 Total: 11.69 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.40 Total: -2.61 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.24 Total: -46.70 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.17 Total: -23.79 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.21 Total: 16.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.28 -6.55 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.171 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds