Wall clock time and date at job start Tue Mar 31 2020 15:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46984 * 166.24303 * 3 2 1 5 5 C 1.37103 * 119.99951 * 275.92861 * 4 3 2 6 6 H 1.07997 * 119.99380 * 140.03438 * 5 4 3 7 7 C 1.38943 * 120.00032 * 320.31451 * 5 4 3 8 8 N 1.31411 * 119.99973 * 165.34746 * 7 5 4 9 9 Si 1.86807 * 120.00119 * 345.34747 * 7 5 4 10 10 H 1.48499 * 109.46885 * 91.44572 * 9 7 5 11 11 H 1.48503 * 109.47038 * 211.44443 * 9 7 5 12 12 H 1.48496 * 109.46916 * 331.44332 * 9 7 5 13 13 C 1.34772 * 119.99953 * 95.92999 * 4 3 2 14 14 O 1.21294 * 120.00040 * 175.59477 * 13 4 3 15 15 C 1.50706 * 120.00098 * 355.60193 * 13 4 3 16 16 H 1.08994 * 109.46939 * 34.68750 * 15 13 4 17 17 C 1.53006 * 109.46530 * 274.68921 * 15 13 4 18 18 N 1.46501 * 109.47337 * 154.69229 * 15 13 4 19 19 C 1.34775 * 119.99633 * 204.99659 * 18 15 13 20 20 O 1.21689 * 120.00218 * 359.97438 * 19 18 15 21 21 C 1.46430 * 119.99458 * 179.97438 * 19 18 15 22 22 C 1.34814 * 119.99873 * 179.97438 * 21 19 18 23 23 C 1.47204 * 120.00168 * 180.02562 * 22 21 19 24 24 C 1.39836 * 120.16577 * 359.72443 * 23 22 21 25 25 C 1.37903 * 119.81994 * 179.71944 * 24 23 22 26 26 C 1.38400 * 120.16972 * 0.58189 * 25 24 23 27 27 C 1.38394 * 120.34871 * 359.69655 * 26 25 24 28 28 C 1.37893 * 120.16958 * 0.02562 * 27 26 25 29 29 H 4.40641 * 5.51381 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.46954 * 46.24429 * 3 2 1 31 31 H 1.08998 * 109.47063 * 286.23937 * 3 2 1 32 32 H 0.96995 * 120.00251 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47122 * 300.18392 * 17 15 13 34 34 H 1.08991 * 109.47247 * 60.19143 * 17 15 13 35 35 H 1.08999 * 109.46815 * 180.19009 * 17 15 13 36 36 H 0.96999 * 120.00142 * 24.99366 * 18 15 13 37 37 H 1.07993 * 120.00473 * 0.02562 * 21 19 18 38 38 H 1.08001 * 119.99462 * 0.02562 * 22 21 19 39 39 H 1.07993 * 120.09324 * 0.02562 * 24 23 22 40 40 H 1.07997 * 119.90916 * 180.29827 * 25 24 23 41 41 H 1.08003 * 119.82336 * 179.71322 * 26 25 24 42 42 H 1.07993 * 119.91873 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.08759 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3425 -0.3285 5 6 3.2464 1.7292 -1.6390 6 1 2.9689 2.7309 -1.9321 7 6 3.7122 0.8306 -2.5909 8 7 3.5541 1.0875 -3.8699 9 14 4.5632 -0.7429 -2.0525 10 1 3.5592 -1.8295 -1.9239 11 1 5.5807 -1.1263 -3.0639 12 1 5.2260 -0.5236 -0.7419 13 6 3.4717 2.1968 0.6576 14 8 3.9504 3.2777 0.3861 15 6 3.2549 1.8090 2.0977 16 1 3.4240 0.7387 2.2152 17 6 1.8195 2.1465 2.5061 18 7 4.1911 2.5477 2.9486 19 6 4.5515 2.0469 4.1469 20 8 4.0989 0.9815 4.5222 21 6 5.4878 2.7850 4.9971 22 6 5.8479 2.2844 6.1960 23 6 6.7886 3.0266 7.0510 24 6 7.3154 4.2484 6.6207 25 6 8.1916 4.9405 7.4299 26 6 8.5592 4.4230 8.6597 27 6 8.0467 3.2116 9.0901 28 6 7.1651 2.5103 8.2948 29 1 -1.0502 -0.0004 0.0003 30 1 3.0097 -0.7099 -0.7423 31 1 3.0095 -0.2866 0.9866 32 1 3.8796 0.4604 -4.5344 33 1 1.6494 3.2164 2.3854 34 1 1.1229 1.5944 1.8753 35 1 1.6636 1.8692 3.5486 36 1 4.5517 3.3971 2.6496 37 1 5.8891 3.7307 4.6643 38 1 5.4461 1.3388 6.5290 39 1 7.0329 4.6513 5.6594 40 1 8.5955 5.8866 7.1011 41 1 9.2495 4.9675 9.2870 42 1 8.3380 2.8144 10.0512 43 1 6.7657 1.5653 8.6322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:21 Heat of formation + Delta-G solvation = 28.176399 kcal Electronic energy + Delta-G solvation = -26160.303094 eV Core-core repulsion = 22365.576099 eV Total energy + Delta-G solvation = -3794.726994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54240 -40.43910 -39.87848 -37.44633 -36.11539 -35.03752 -34.55151 -33.39799 -32.13076 -31.86445 -30.28040 -28.60037 -27.42285 -25.86970 -24.38150 -23.48964 -22.14622 -21.04587 -20.39327 -20.23753 -18.92505 -18.51456 -18.03176 -17.91927 -17.11798 -17.03201 -16.40022 -16.14314 -15.91286 -15.74119 -15.37199 -15.16381 -14.82371 -14.63136 -14.56151 -14.38464 -14.25143 -14.05122 -13.90600 -13.61623 -13.38205 -13.11145 -12.92966 -12.71761 -12.60517 -12.16281 -12.03286 -11.83564 -11.39893 -11.35505 -11.25667 -11.12925 -10.98361 -10.56587 -10.21650 -10.00511 -9.88085 -9.23293 -8.55893 -6.28438 -0.45857 0.49447 1.00865 1.11677 1.23929 1.34642 1.57829 1.67103 1.89990 2.09653 2.10178 2.24442 2.72634 2.87632 2.97417 3.52258 3.53359 3.62026 3.81408 3.84030 4.04396 4.06944 4.11884 4.16477 4.23241 4.31717 4.36056 4.53909 4.56501 4.61569 4.69496 4.98432 5.03974 5.05085 5.07895 5.17361 5.20073 5.28547 5.43796 5.55646 5.59415 5.67924 5.93686 6.05254 6.35698 6.47527 6.70460 6.76848 7.07779 7.13834 7.59753 8.60144 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.002527 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.765524 B =11076.142624 C =11546.395982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.234 4.234 3 C 0.183 3.817 4 N -0.465 5.465 5 C -0.327 4.327 6 H 0.053 0.947 7 C 0.016 3.984 8 N -0.908 5.908 9 Si 0.939 3.061 10 H -0.241 1.241 11 H -0.281 1.281 12 H -0.254 1.254 13 C 0.467 3.533 14 O -0.590 6.590 15 C 0.133 3.867 16 H 0.105 0.895 17 C -0.146 4.146 18 N -0.703 5.703 19 C 0.548 3.452 20 O -0.581 6.581 21 C -0.217 4.217 22 C -0.008 4.008 23 C -0.095 4.095 24 C -0.113 4.113 25 C -0.132 4.132 26 C -0.112 4.112 27 C -0.130 4.130 28 C -0.104 4.104 29 H 0.257 0.743 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.282 0.718 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 0.819 25.241 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.235 4.235 3 C 0.062 3.938 4 N -0.186 5.186 5 C -0.454 4.454 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.545 5.545 9 Si 0.763 3.237 10 H -0.166 1.166 11 H -0.207 1.207 12 H -0.178 1.178 13 C 0.256 3.744 14 O -0.473 6.473 15 C 0.024 3.976 16 H 0.123 0.877 17 C -0.205 4.205 18 N -0.355 5.355 19 C 0.339 3.661 20 O -0.463 6.463 21 C -0.238 4.238 22 C -0.028 4.028 23 C -0.095 4.095 24 C -0.130 4.130 25 C -0.150 4.150 26 C -0.129 4.129 27 C -0.148 4.148 28 C -0.122 4.122 29 H 0.273 0.727 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.168 0.832 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.166 0.834 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.415 0.587 25.098 25.682 hybrid contribution 0.211 -0.021 -1.039 1.060 sum 5.626 0.566 24.059 24.715 Atomic orbital electron populations 1.25707 0.96457 0.97193 0.99175 1.23483 0.94994 1.03011 1.02014 1.19089 0.86032 0.86143 1.02538 1.43699 1.56849 1.12745 1.05326 1.18625 1.44826 1.00013 0.81977 0.92924 1.26109 0.95702 1.02276 0.94610 1.69779 1.44116 1.39200 1.01382 0.85980 0.79313 0.79173 0.79246 1.16621 1.20748 1.17824 1.20925 0.80069 0.85865 0.87540 1.90527 1.47788 1.24460 1.84486 1.20745 0.92082 0.98275 0.86465 0.87712 1.22018 0.92945 1.02587 1.02915 1.45735 1.46394 1.25527 1.17858 1.18751 0.81190 0.85046 0.81072 1.90761 1.57771 1.23949 1.73831 1.22851 1.01887 1.02776 0.96250 1.22436 0.91068 0.97565 0.91755 1.19122 0.98930 0.95926 0.95564 1.21710 0.96750 0.94104 1.00477 1.21436 0.97848 1.00864 0.94802 1.21703 0.99083 0.95900 0.96255 1.21446 0.97168 0.95396 1.00749 1.21657 0.97166 1.00358 0.93007 0.72692 0.90288 0.86209 0.90834 0.92076 0.90673 0.90094 0.74867 0.83189 0.85015 0.84710 0.83883 0.83542 0.83449 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 18.95 74.32 1.41 -3.73 16 2 C -0.23 -8.75 11.91 31.13 0.37 -8.38 16 3 C 0.18 7.44 4.71 84.57 0.40 7.84 16 4 N -0.47 -22.73 2.16 -645.40 -1.39 -24.12 16 5 C -0.33 -19.05 9.31 84.04 0.78 -18.27 16 6 H 0.05 3.56 8.00 -2.91 -0.02 3.53 16 7 C 0.02 0.89 5.42 84.92 0.46 1.35 16 8 N -0.91 -53.88 13.96 21.66 0.30 -53.58 16 9 Si 0.94 41.84 24.77 68.60 1.70 43.54 16 10 H -0.24 -9.56 6.66 99.48 0.66 -8.90 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.25 -10.93 7.09 99.48 0.71 -10.23 16 13 C 0.47 21.58 6.83 87.66 0.60 22.18 16 14 O -0.59 -31.08 15.94 -3.07 -0.05 -31.13 16 15 C 0.13 4.80 2.35 44.25 0.10 4.91 16 16 H 0.11 3.71 5.35 -2.39 -0.01 3.70 16 17 C -0.15 -4.62 9.47 71.98 0.68 -3.94 16 18 N -0.70 -22.60 5.05 -450.33 -2.27 -24.88 16 19 C 0.55 16.57 7.71 86.38 0.67 17.23 16 20 O -0.58 -20.52 15.89 -4.31 -0.07 -20.59 16 21 C -0.22 -4.97 9.41 23.62 0.22 -4.75 16 22 C -0.01 -0.18 9.46 23.84 0.23 0.05 16 23 C -0.10 -1.72 5.87 -20.15 -0.12 -1.84 16 24 C -0.11 -1.84 9.41 22.58 0.21 -1.62 16 25 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 26 C -0.11 -1.28 10.04 22.35 0.22 -1.06 16 27 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 28 C -0.10 -1.56 9.80 22.57 0.22 -1.33 16 29 H 0.26 5.14 7.80 -4.41 -0.03 5.10 16 30 H 0.08 3.31 2.59 -2.39 -0.01 3.31 16 31 H 0.12 4.09 5.68 -2.39 -0.01 4.08 16 32 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 2.38 5.94 -2.39 -0.01 2.36 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.41 12.82 7.76 -92.71 -0.72 12.10 16 37 H 0.15 2.73 6.07 -2.91 -0.02 2.71 16 38 H 0.13 2.83 7.52 -2.91 -0.02 2.81 16 39 H 0.14 1.92 6.17 -2.91 -0.02 1.91 16 40 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -75.94 369.04 5.41 -70.53 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.29 Total: 34.46 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.90 Total: 5.77 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.36 Total: -102.58 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.12 Total: -51.71 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.70 Total: 43.54 kcal Total: -75.94 5.41 -70.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.708 kcal (2) G-P(sol) polarization free energy of solvation -75.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds