Wall clock time and date at job start Tue Mar 31 2020 14:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35893 * 116.99765 * 2 1 4 4 C 1.38752 * 120.05876 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94671 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05476 * 359.74556 * 5 4 3 7 7 C 1.38248 * 120.10806 * 0.51095 * 6 5 4 8 8 C 1.50704 * 119.96776 * 179.76775 * 7 6 5 9 9 H 1.08998 * 109.46769 * 179.72477 * 8 7 6 10 10 C 1.52997 * 109.47346 * 59.72533 * 8 7 6 11 11 C 1.50702 * 109.46884 * 299.72257 * 8 7 6 12 12 O 1.21276 * 120.00288 * 0.02562 * 11 8 7 13 13 N 1.34783 * 119.99647 * 180.02562 * 11 8 7 14 14 C 1.39467 * 119.99733 * 175.18450 * 13 11 8 15 15 C 1.38599 * 119.58112 * 185.04586 * 14 13 11 16 16 C 1.40809 * 118.79688 * 179.78136 * 15 14 13 17 17 C 1.41540 * 120.99538 * 180.26032 * 16 15 14 18 18 H 1.08003 * 120.00164 * 203.79286 * 17 16 15 19 19 C 1.40035 * 120.00283 * 23.79134 * 17 16 15 20 20 N 1.30749 * 119.99891 * 17.16388 * 19 17 16 21 21 Si 1.86796 * 120.00368 * 197.16111 * 19 17 16 22 22 H 1.48497 * 109.46908 * 94.68050 * 21 19 17 23 23 H 1.48501 * 109.47362 * 214.68302 * 21 19 17 24 24 H 1.48506 * 109.47160 * 334.68372 * 21 19 17 25 25 C 1.41168 * 118.00586 * 0.48084 * 16 15 14 26 26 C 1.37590 * 119.01766 * 359.75681 * 25 16 15 27 27 N 1.32079 * 121.10918 * 0.02562 * 26 25 16 28 28 C 1.38152 * 120.05610 * 359.48900 * 7 6 5 29 29 H 1.08996 * 109.47404 * 300.00488 * 1 2 3 30 30 H 1.09001 * 109.46877 * 60.00819 * 1 2 3 31 31 H 1.09004 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.02896 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.97621 * 180.02562 * 5 4 3 34 34 H 1.07994 * 119.94644 * 180.27797 * 6 5 4 35 35 H 1.09007 * 109.46895 * 299.99713 * 10 8 7 36 36 H 1.08997 * 109.47315 * 59.99593 * 10 8 7 37 37 H 1.09002 * 109.47052 * 180.02562 * 10 8 7 38 38 H 0.96999 * 120.00126 * 355.18835 * 13 11 8 39 39 H 1.07995 * 120.59794 * 0.02562 * 15 14 13 40 40 H 0.96992 * 119.99910 * 179.97438 * 20 19 17 41 41 H 1.08008 * 120.49015 * 179.77788 * 25 16 15 42 42 H 1.08002 * 119.44661 * 180.02562 * 26 25 16 43 43 H 1.08010 * 120.02966 * 180.27292 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5982 0.0010 9 1 5.9789 1.5916 0.0009 10 6 6.0309 3.3454 1.2506 11 6 6.0245 3.3350 -1.2291 12 8 5.2130 3.7534 -2.0273 13 7 7.3412 3.5289 -1.4421 14 6 7.7759 4.1211 -2.6276 15 6 9.1342 4.2211 -2.8845 16 6 9.5547 4.8177 -4.0886 17 6 10.9300 4.9390 -4.4006 18 1 11.2622 5.7010 -5.0901 19 6 11.8600 4.0710 -3.8153 20 7 11.4563 2.9583 -3.2599 21 14 13.6774 4.5027 -3.8280 22 1 14.0335 5.1826 -2.5568 23 1 14.4801 3.2611 -3.9671 24 1 13.9632 5.4076 -4.9703 25 6 8.5637 5.2956 -4.9731 26 6 7.2388 5.1561 -4.6291 27 7 6.8855 4.5861 -3.4912 28 6 3.4311 1.2849 0.0000 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3203 0.0014 33 1 1.3340 4.5114 0.0019 34 1 3.7922 4.6380 0.0113 35 1 5.6127 4.3521 1.2508 36 1 5.6954 2.8126 2.1403 37 1 7.1193 3.4045 1.2507 38 1 7.9864 3.2566 -0.7710 39 1 9.8569 3.8447 -2.1757 40 1 12.1005 2.3570 -2.8548 41 1 8.8413 5.7634 -5.9062 42 1 6.4748 5.5188 -5.3009 43 1 4.0207 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532434852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:57 Heat of formation + Delta-G solvation = -13.245277 kcal Electronic energy + Delta-G solvation = -26461.600226 eV Core-core repulsion = 22665.077053 eV Total energy + Delta-G solvation = -3796.523173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43099 -39.57628 -38.17905 -37.15578 -34.32433 -33.95501 -33.54001 -30.79310 -30.53705 -29.32815 -28.26913 -27.43398 -26.00036 -24.66521 -22.58896 -22.34150 -21.92484 -20.71926 -19.44849 -17.91537 -17.58978 -16.88591 -16.23355 -15.96298 -15.84816 -15.61787 -15.23910 -14.88546 -14.30716 -14.18785 -14.05536 -13.81436 -13.54735 -13.37258 -12.94306 -12.81123 -12.61470 -12.47583 -12.41583 -12.07819 -11.99939 -11.48487 -11.46450 -11.28361 -11.24331 -11.05155 -10.90803 -10.76073 -10.27916 -10.13780 -9.72732 -9.36292 -9.29289 -8.81102 -8.14646 -8.01085 -7.70574 -7.02960 -6.82261 -4.62063 1.31393 1.51996 2.56505 2.77259 3.00756 3.04507 3.13923 3.20184 3.47482 3.58287 3.83560 3.92779 4.56563 4.65176 4.73657 4.90357 4.94408 4.96262 5.04202 5.13447 5.23587 5.26899 5.40965 5.50525 5.56109 5.68486 5.72395 5.78843 5.96294 6.04542 6.09346 6.27744 6.48472 6.58686 6.63987 6.68531 6.75721 6.81182 6.94390 7.09440 7.34743 7.39127 7.46374 7.77553 7.93549 8.21742 8.42400 8.70114 8.73620 8.91069 9.69905 10.04864 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.002520 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.336778 B =11109.056258 C =11513.372141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.116 4.116 7 C -0.022 4.022 8 C -0.075 4.075 9 H 0.104 0.896 10 C -0.140 4.140 11 C 0.503 3.497 12 O -0.470 6.470 13 N -0.658 5.658 14 C 0.338 3.662 15 C -0.245 4.245 16 C 0.143 3.857 17 C -0.456 4.456 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.787 5.787 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.285 4.285 26 C 0.119 3.881 27 N -0.554 5.554 28 C -0.143 4.143 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.407 0.593 39 H 0.127 0.873 40 H 0.282 0.718 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -3.942 11.363 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.135 4.135 7 C -0.022 4.022 8 C -0.097 4.097 9 H 0.122 0.878 10 C -0.198 4.198 11 C 0.286 3.714 12 O -0.339 6.339 13 N -0.304 5.304 14 C 0.114 3.886 15 C -0.270 4.270 16 C 0.135 3.865 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.141 4.141 20 N -0.412 5.412 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.309 4.309 26 C -0.035 4.035 27 N -0.274 5.274 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.242 0.758 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.082 -4.164 11.128 18.425 hybrid contribution 1.883 0.060 -0.003 1.884 sum -12.199 -4.104 11.124 17.012 Atomic orbital electron populations 1.23013 0.78692 1.03663 1.01257 1.86051 1.21138 1.27133 1.89063 1.18873 0.92133 0.84017 0.97487 1.21161 0.99670 0.92482 1.09509 1.20870 0.94534 0.96853 0.97847 1.20856 0.93463 0.98191 1.00954 1.19073 0.93553 0.92496 0.97122 1.20370 0.92731 1.01556 0.94998 0.87780 1.21795 1.01609 1.00725 0.95667 1.20377 0.82709 0.80915 0.87384 1.90802 1.52150 1.46028 1.44893 1.43427 1.07613 1.60395 1.18934 1.18186 0.89598 0.94352 0.86491 1.21528 0.92034 1.12725 1.00759 1.17564 0.93116 0.86935 0.88896 1.19590 0.90806 1.14666 1.23593 0.89953 1.25965 1.01912 0.93460 0.92770 1.69787 1.37304 1.07052 1.27058 0.86245 0.81220 0.79081 0.79899 1.19231 1.20191 1.18442 1.21886 0.93763 1.13705 1.01559 1.21756 0.93968 0.95306 0.92470 1.67226 1.36673 1.18519 1.04949 1.20219 0.91391 0.97867 1.06693 0.92825 0.92721 0.88451 0.85840 0.85904 0.85949 0.91701 0.91318 0.91490 0.75849 0.85518 0.90721 0.88032 0.85964 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.89 10.50 -19.40 -0.20 -4.09 16 3 C 0.12 1.58 6.69 -39.21 -0.26 1.32 16 4 C -0.21 -2.51 9.04 -39.43 -0.36 -2.87 16 5 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 6 C -0.12 -1.66 7.93 -39.56 -0.31 -1.97 16 7 C -0.02 -0.31 4.39 -104.65 -0.46 -0.77 16 8 C -0.07 -1.01 2.91 -92.92 -0.27 -1.28 16 9 H 0.10 1.22 7.87 -51.93 -0.41 0.81 16 10 C -0.14 -1.50 8.90 37.16 0.33 -1.17 16 11 C 0.50 9.39 6.99 -10.98 -0.08 9.31 16 12 O -0.47 -10.74 13.38 5.56 0.07 -10.66 16 13 N -0.66 -12.74 5.31 -11.49 -0.06 -12.81 16 14 C 0.34 8.19 7.42 -154.70 -1.15 7.04 16 15 C -0.25 -6.19 8.62 -38.48 -0.33 -6.52 16 16 C 0.14 3.76 5.60 -106.56 -0.60 3.17 16 17 C -0.46 -11.67 9.12 -37.65 -0.34 -12.01 16 18 H 0.08 2.03 7.90 -52.48 -0.41 1.61 16 19 C 0.08 1.87 5.19 -17.34 -0.09 1.78 16 20 N -0.79 -19.24 10.94 55.55 0.61 -18.64 16 21 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.29 -7.04 9.90 -38.71 -0.38 -7.43 16 26 C 0.12 2.89 11.15 -17.68 -0.20 2.69 16 27 N -0.55 -14.22 7.85 -12.52 -0.10 -14.32 16 28 C -0.14 -1.97 9.61 -39.44 -0.38 -2.35 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.12 1.15 6.30 -52.48 -0.33 0.82 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.78 7.51 -52.49 -0.39 1.38 16 35 H 0.06 0.72 7.37 -51.92 -0.38 0.34 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.64 7.46 -51.93 -0.39 0.25 16 38 H 0.41 6.43 7.98 -40.82 -0.33 6.10 16 39 H 0.13 3.16 6.21 -52.49 -0.33 2.83 16 40 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 41 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 42 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 43 H 0.13 1.60 7.95 -52.48 -0.42 1.18 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -32.55 362.83 -8.96 -41.51 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.43 Total: 12.07 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -4.28 Total: -11.28 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.45 Total: -45.76 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.13 Total: -14.75 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.55 -8.96 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.264 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds