Wall clock time and date at job start Tue Mar 31 2020 14:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35893 * 116.99765 * 2 1 4 4 C 1.38752 * 120.05876 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94671 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05476 * 359.74556 * 5 4 3 7 7 C 1.38248 * 120.10806 * 0.51095 * 6 5 4 8 8 C 1.50704 * 119.96776 * 179.76775 * 7 6 5 9 9 H 1.08998 * 109.46769 * 179.72477 * 8 7 6 10 10 C 1.52997 * 109.47346 * 59.72533 * 8 7 6 11 11 C 1.50702 * 109.46884 * 299.72257 * 8 7 6 12 12 O 1.21276 * 120.00288 * 0.02562 * 11 8 7 13 13 N 1.34783 * 119.99647 * 180.02562 * 11 8 7 14 14 C 1.39467 * 119.99733 * 175.18450 * 13 11 8 15 15 C 1.38599 * 119.58112 * 185.04586 * 14 13 11 16 16 C 1.40809 * 118.79688 * 179.78136 * 15 14 13 17 17 C 1.41540 * 120.99538 * 180.26032 * 16 15 14 18 18 H 1.08003 * 120.00164 * 203.79286 * 17 16 15 19 19 C 1.40035 * 120.00283 * 23.79134 * 17 16 15 20 20 N 1.30749 * 119.99891 * 17.16388 * 19 17 16 21 21 Si 1.86796 * 120.00368 * 197.16111 * 19 17 16 22 22 H 1.48497 * 109.46908 * 94.68050 * 21 19 17 23 23 H 1.48501 * 109.47362 * 214.68302 * 21 19 17 24 24 H 1.48506 * 109.47160 * 334.68372 * 21 19 17 25 25 C 1.41168 * 118.00586 * 0.48084 * 16 15 14 26 26 C 1.37590 * 119.01766 * 359.75681 * 25 16 15 27 27 N 1.32079 * 121.10918 * 0.02562 * 26 25 16 28 28 C 1.38152 * 120.05610 * 359.48900 * 7 6 5 29 29 H 1.08996 * 109.47404 * 300.00488 * 1 2 3 30 30 H 1.09001 * 109.46877 * 60.00819 * 1 2 3 31 31 H 1.09004 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.02896 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.97621 * 180.02562 * 5 4 3 34 34 H 1.07994 * 119.94644 * 180.27797 * 6 5 4 35 35 H 1.09007 * 109.46895 * 299.99713 * 10 8 7 36 36 H 1.08997 * 109.47315 * 59.99593 * 10 8 7 37 37 H 1.09002 * 109.47052 * 180.02562 * 10 8 7 38 38 H 0.96999 * 120.00126 * 355.18835 * 13 11 8 39 39 H 1.07995 * 120.59794 * 0.02562 * 15 14 13 40 40 H 0.96992 * 119.99910 * 179.97438 * 20 19 17 41 41 H 1.08008 * 120.49015 * 179.77788 * 25 16 15 42 42 H 1.08002 * 119.44661 * 180.02562 * 26 25 16 43 43 H 1.08010 * 120.02966 * 180.27292 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5982 0.0010 9 1 5.9789 1.5916 0.0009 10 6 6.0309 3.3454 1.2506 11 6 6.0245 3.3350 -1.2291 12 8 5.2130 3.7534 -2.0273 13 7 7.3412 3.5289 -1.4421 14 6 7.7759 4.1211 -2.6276 15 6 9.1342 4.2211 -2.8845 16 6 9.5547 4.8177 -4.0886 17 6 10.9300 4.9390 -4.4006 18 1 11.2622 5.7010 -5.0901 19 6 11.8600 4.0710 -3.8153 20 7 11.4563 2.9583 -3.2599 21 14 13.6774 4.5027 -3.8280 22 1 14.0335 5.1826 -2.5568 23 1 14.4801 3.2611 -3.9671 24 1 13.9632 5.4076 -4.9703 25 6 8.5637 5.2956 -4.9731 26 6 7.2388 5.1561 -4.6291 27 7 6.8855 4.5861 -3.4912 28 6 3.4311 1.2849 0.0000 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3203 0.0014 33 1 1.3340 4.5114 0.0019 34 1 3.7922 4.6380 0.0113 35 1 5.6127 4.3521 1.2508 36 1 5.6954 2.8126 2.1403 37 1 7.1193 3.4045 1.2507 38 1 7.9864 3.2566 -0.7710 39 1 9.8569 3.8447 -2.1757 40 1 12.1005 2.3570 -2.8548 41 1 8.8413 5.7634 -5.9062 42 1 6.4748 5.5188 -5.3009 43 1 4.0207 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532434852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:56 Heat of formation + Delta-G solvation = -31.697017 kcal Electronic energy + Delta-G solvation = -26462.400353 eV Core-core repulsion = 22665.077053 eV Total energy + Delta-G solvation = -3797.323300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64279 -40.87546 -39.73902 -38.33222 -36.11713 -35.52829 -34.80693 -32.45754 -31.73172 -30.65721 -29.69170 -28.13520 -27.90944 -25.78135 -23.89545 -23.70055 -23.53260 -22.14225 -20.87680 -19.47458 -18.95307 -18.14032 -17.54624 -17.11686 -17.00706 -16.82010 -16.60837 -16.16307 -16.07237 -15.75270 -15.51630 -15.20777 -14.63523 -14.51114 -14.36566 -14.35024 -14.17089 -13.68820 -13.25120 -13.20642 -13.15621 -12.94700 -12.92179 -12.65819 -12.36225 -12.33325 -12.05230 -11.90996 -11.89200 -11.68132 -11.46745 -11.14119 -10.86424 -9.95508 -9.84354 -9.55427 -9.11943 -8.86021 -8.64723 -6.56322 0.31436 0.51368 0.75292 0.99711 1.41596 1.54903 1.55556 1.90154 2.11738 2.20387 2.40133 2.80255 2.83408 3.51361 3.69709 3.74985 3.88831 4.09475 4.13185 4.18404 4.27785 4.34565 4.40564 4.41061 4.56516 4.66292 4.73591 4.75929 4.83137 4.87024 4.89942 4.93376 5.06938 5.08930 5.21977 5.22548 5.31181 5.48365 5.48821 5.65040 5.65864 5.79385 5.90743 6.15258 6.46639 6.48132 6.61479 6.79692 6.82964 7.33325 7.85053 8.25956 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.002520 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.336778 B =11109.056258 C =11513.372141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.208 4.208 5 C -0.087 4.087 6 C -0.136 4.136 7 C -0.036 4.036 8 C -0.062 4.062 9 H 0.126 0.874 10 C -0.136 4.136 11 C 0.500 3.500 12 O -0.514 6.514 13 N -0.651 5.651 14 C 0.336 3.664 15 C -0.262 4.262 16 C 0.113 3.887 17 C -0.484 4.484 18 H 0.083 0.917 19 C 0.040 3.960 20 N -0.810 5.810 21 Si 0.988 3.012 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.259 1.259 25 C -0.300 4.300 26 C 0.113 3.887 27 N -0.579 5.579 28 C -0.159 4.159 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.422 0.578 39 H 0.125 0.875 40 H 0.293 0.707 41 H 0.114 0.886 42 H 0.147 0.853 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 -4.699 12.621 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.067 3.933 4 C -0.226 4.226 5 C -0.105 4.105 6 C -0.155 4.155 7 C -0.036 4.036 8 C -0.083 4.083 9 H 0.143 0.857 10 C -0.193 4.193 11 C 0.287 3.713 12 O -0.386 6.386 13 N -0.298 5.298 14 C 0.110 3.890 15 C -0.288 4.288 16 C 0.105 3.895 17 C -0.514 4.514 18 H 0.101 0.899 19 C -0.177 4.177 20 N -0.435 5.435 21 Si 0.808 3.192 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.183 1.183 25 C -0.324 4.324 26 C -0.041 4.041 27 N -0.300 5.300 28 C -0.178 4.178 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.164 0.836 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.109 -4.942 12.420 19.436 hybrid contribution 1.767 0.228 -0.404 1.827 sum -12.342 -4.714 12.016 17.858 Atomic orbital electron populations 1.23339 0.76476 1.05547 1.02219 1.86032 1.23482 1.26689 1.88865 1.19055 0.92258 0.84889 0.97110 1.21465 1.01100 0.91754 1.08328 1.21167 0.94129 0.98148 0.97092 1.20928 0.94481 0.97814 1.02238 1.19171 0.93791 0.92792 0.97864 1.20360 0.92667 1.02016 0.93283 0.85656 1.21819 1.02331 1.00189 0.95007 1.21313 0.81711 0.80009 0.88293 1.90770 1.53084 1.47854 1.46881 1.43467 1.08675 1.59769 1.17896 1.18445 0.89364 0.93652 0.87540 1.21522 0.92503 1.13915 1.00826 1.18006 0.94098 0.87641 0.89729 1.19866 0.91279 1.15527 1.24767 0.89879 1.26827 1.06359 0.92796 0.91754 1.69812 1.39378 1.07621 1.26672 0.85105 0.75048 0.79023 0.80037 1.18392 1.19133 1.18315 1.22062 0.93876 1.14368 1.02099 1.22185 0.94559 0.94712 0.92596 1.67355 1.37285 1.19558 1.05757 1.20399 0.92204 0.97952 1.07219 0.91332 0.92184 0.86285 0.83087 0.83808 0.87100 0.92522 0.88902 0.90257 0.74009 0.85726 0.89590 0.86770 0.83553 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.65 10.50 -92.35 -0.97 -8.62 16 3 C 0.11 2.83 6.69 22.51 0.15 2.98 16 4 C -0.21 -4.65 9.04 22.37 0.20 -4.44 16 5 C -0.09 -2.11 10.04 22.25 0.22 -1.89 16 6 C -0.14 -3.89 7.93 22.28 0.18 -3.71 16 7 C -0.04 -1.00 4.39 -19.88 -0.09 -1.09 16 8 C -0.06 -1.63 2.91 -12.29 -0.04 -1.67 16 9 H 0.13 2.75 7.87 -2.39 -0.02 2.73 16 10 C -0.14 -2.70 8.90 71.98 0.64 -2.06 16 11 C 0.50 18.82 6.99 87.66 0.61 19.43 16 12 O -0.51 -24.04 13.38 -3.02 -0.04 -24.08 16 13 N -0.65 -25.41 5.31 -308.65 -1.64 -27.05 16 14 C 0.34 16.60 7.42 132.75 0.98 17.58 16 15 C -0.26 -13.56 8.62 22.99 0.20 -13.36 16 16 C 0.11 6.11 5.60 -21.12 -0.12 6.00 16 17 C -0.48 -25.12 9.12 23.52 0.21 -24.91 16 18 H 0.08 4.15 7.90 -2.91 -0.02 4.12 16 19 C 0.04 1.91 5.19 85.29 0.44 2.35 16 20 N -0.81 -39.48 10.94 21.84 0.24 -39.24 16 21 Si 0.99 35.69 29.59 68.60 2.03 37.72 16 22 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 23 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 24 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 25 C -0.30 -15.17 9.90 22.84 0.23 -14.94 16 26 C 0.11 5.59 11.15 84.50 0.94 6.53 16 27 N -0.58 -30.38 7.85 -193.53 -1.52 -31.90 16 28 C -0.16 -4.28 9.61 22.36 0.21 -4.07 16 29 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 30 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 31 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.15 2.41 6.30 -2.91 -0.02 2.39 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.11 3.32 7.51 -2.91 -0.02 3.30 16 35 H 0.06 1.23 7.37 -2.38 -0.02 1.21 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.37 7.46 -2.39 -0.02 1.35 16 38 H 0.42 13.24 7.98 -92.71 -0.74 12.50 16 39 H 0.13 6.35 6.21 -2.91 -0.02 6.33 16 40 H 0.29 12.70 8.29 -92.71 -0.77 11.93 16 41 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 42 H 0.15 6.28 8.06 -2.91 -0.02 6.25 16 43 H 0.14 3.28 7.95 -2.91 -0.02 3.26 16 Total: -1.00 -71.75 362.83 4.51 -67.25 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: 0.31 Total: 41.84 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 6.10 Total: -15.90 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -2.92 Total: -98.20 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.01 Total: -32.70 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -71.75 4.51 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.550 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds