Wall clock time and date at job start Tue Mar 31 2020 14:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 C 1.50703 * 109.46925 * 119.99050 * 2 1 3 5 5 H 1.08008 * 119.99501 * 119.99801 * 4 2 1 6 6 C 1.37870 * 120.00545 * 300.00355 * 4 2 1 7 7 N 1.31514 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00405 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47024 * 89.99703 * 8 6 4 10 10 H 1.48498 * 109.47405 * 210.00174 * 8 6 4 11 11 H 1.48503 * 109.46704 * 330.00149 * 8 6 4 12 12 N 1.46893 * 109.47314 * 239.99703 * 2 1 3 13 13 C 1.46908 * 110.99786 * 306.04536 * 12 2 1 14 14 C 1.46898 * 111.00111 * 69.99787 * 12 2 1 15 15 C 1.47207 * 109.46905 * 169.99916 * 14 12 2 16 16 C 4.80850 * 108.11491 * 257.61359 * 2 1 3 17 17 C 6.22775 * 110.71356 * 254.26575 * 2 1 3 18 18 N 1.46500 * 109.47150 * 198.57155 * 17 16 15 19 19 C 1.34527 * 124.46231 * 270.27735 * 18 17 16 20 20 O 1.21446 * 125.70963 * 359.81517 * 19 18 17 21 21 C 1.47821 * 108.57647 * 180.17344 * 19 18 17 22 22 C 1.38562 * 134.29367 * 179.88273 * 21 19 18 23 23 C 1.38611 * 119.71824 * 179.64830 * 22 21 19 24 24 C 1.38225 * 120.46055 * 0.03750 * 23 22 21 25 25 C 1.38620 * 120.45740 * 359.97438 * 24 23 22 26 26 C 1.38559 * 119.71962 * 359.97438 * 25 24 23 27 27 C 1.34523 * 124.45711 * 90.00743 * 18 17 16 28 28 O 1.21451 * 125.71329 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.46819 * 60.00521 * 1 2 3 30 30 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46996 * 300.00390 * 1 2 3 32 32 H 0.96999 * 120.00408 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46864 * 183.95399 * 13 12 2 34 34 H 1.09001 * 109.46800 * 303.95042 * 13 12 2 35 35 H 1.08992 * 109.47249 * 63.95567 * 13 12 2 36 36 H 1.08994 * 109.47072 * 50.00646 * 14 12 2 37 37 H 1.09000 * 109.47161 * 290.00167 * 14 12 2 38 38 H 1.09008 * 109.46873 * 78.57668 * 17 16 15 39 39 H 1.08998 * 109.47376 * 318.57902 * 17 16 15 40 40 H 1.08005 * 120.14443 * 359.66834 * 22 21 19 41 41 H 1.08005 * 119.76997 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.77617 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.13832 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1199 4.0082 9 1 3.6296 -0.5454 4.4125 10 1 1.3430 -0.9488 5.1122 11 1 2.4858 -2.5658 3.7122 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0356 -1.3076 14 6 1.7529 0.0971 -2.4090 15 6 2.4607 -0.5023 -3.5521 16 6 3.0251 -0.9803 -4.4638 17 6 3.7327 -1.5797 -5.6069 18 7 5.0744 -1.0002 -5.7090 19 6 5.3757 0.1013 -6.4202 20 8 4.5914 0.7609 -7.0719 21 6 6.8229 0.3693 -6.2826 22 6 7.6787 1.3398 -6.7783 23 6 9.0229 1.3076 -6.4415 24 6 9.5148 0.3142 -5.6158 25 6 8.6705 -0.6634 -5.1127 26 6 7.3243 -0.6432 -5.4400 27 6 6.1662 -1.4965 -5.0998 28 8 6.1957 -2.4810 -4.3892 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7088 1.1617 3.4843 33 1 1.8665 -2.5522 -2.1646 34 1 1.6467 -2.5988 -0.3988 35 1 0.3556 -1.9522 -1.4397 36 1 2.1026 1.1187 -2.2604 37 1 0.6814 0.1051 -2.6087 38 1 3.1788 -1.3773 -6.5237 39 1 3.8123 -2.6569 -5.4608 40 1 7.2999 2.1183 -7.4241 41 1 9.6906 2.0639 -6.8271 42 1 10.5640 0.2999 -5.3602 43 1 9.0605 -1.4374 -4.4684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599311245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:42 Heat of formation + Delta-G solvation = 50.725323 kcal Electronic energy + Delta-G solvation = -26088.564805 eV Core-core repulsion = 22294.815605 eV Total energy + Delta-G solvation = -3793.749199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52975 -38.84073 -38.80308 -37.43423 -36.16178 -34.09414 -32.87441 -31.64748 -31.54125 -29.23269 -27.99537 -26.51711 -25.38053 -25.23402 -23.84866 -23.09953 -22.49112 -20.30927 -19.42219 -18.07248 -17.78060 -17.37272 -16.72721 -16.32830 -15.63340 -15.58168 -15.17122 -15.00529 -14.73135 -14.44160 -14.41080 -14.15899 -14.07805 -13.92240 -13.50829 -13.09410 -12.77473 -12.73325 -12.47226 -12.14426 -11.81285 -11.37405 -11.07470 -10.92343 -10.82881 -10.75632 -10.63850 -10.55324 -10.24849 -10.06777 -10.01133 -9.67600 -9.63846 -9.62875 -9.59385 -8.92900 -8.39148 -7.24422 -6.01907 -4.05448 -0.26250 0.56622 1.71754 1.84983 2.71191 2.86225 3.15116 3.21072 3.32122 3.32892 3.38140 3.42499 4.01761 4.21053 4.29835 4.43452 4.45213 4.64868 4.80400 4.88844 5.04855 5.07407 5.22584 5.30795 5.32648 5.40345 5.53470 5.69042 5.76704 5.78610 5.93589 6.03307 6.16367 6.22220 6.36060 6.42900 6.63387 6.79148 6.86344 6.97559 7.06305 7.39413 7.42692 7.67454 7.77983 7.84520 8.07172 8.33432 8.53860 9.00244 9.59534 11.05351 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.002635 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.979856 B =10624.996518 C =11483.852296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.210 3.790 3 H 0.041 0.959 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.531 5.531 13 C 0.035 3.965 14 C 0.151 3.849 15 C -0.086 4.086 16 C -0.257 4.257 17 C 0.243 3.757 18 N -0.574 5.574 19 C 0.577 3.423 20 O -0.461 6.461 21 C -0.139 4.139 22 C -0.046 4.046 23 C -0.098 4.098 24 C -0.096 4.096 25 C -0.045 4.045 26 C -0.135 4.135 27 C 0.574 3.426 28 O -0.451 6.451 29 H 0.007 0.993 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.019 0.981 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.672 -0.589 -21.097 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.255 5.255 13 C -0.114 4.114 14 C 0.023 3.977 15 C -0.089 4.089 16 C -0.260 4.260 17 C 0.125 3.875 18 N -0.316 5.316 19 C 0.366 3.634 20 O -0.332 6.332 21 C -0.142 4.142 22 C -0.064 4.064 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.064 4.064 26 C -0.139 4.139 27 C 0.362 3.638 28 O -0.320 6.320 29 H 0.026 0.974 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.038 0.962 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.599 -0.760 -20.854 25.468 hybrid contribution -0.732 -0.266 0.907 1.196 sum 13.866 -1.026 -19.948 24.315 Atomic orbital electron populations 1.22430 1.00582 0.99637 1.00652 1.19372 0.89947 0.94571 0.85659 0.94134 1.21085 1.30559 1.12573 0.89474 0.91870 1.24920 0.95198 0.95160 0.99006 1.69879 1.37053 1.23083 1.23467 0.86493 0.78504 0.80039 0.82356 1.20659 1.21350 1.19902 1.62390 1.59251 1.02597 1.01268 1.22252 0.96124 0.91514 1.01488 1.19201 0.95799 0.97025 0.85626 1.22774 0.95208 0.96488 0.94381 1.21886 1.03078 1.02812 0.98198 1.18251 0.77521 0.97446 0.94294 1.46638 1.10492 1.27997 1.46449 1.18369 0.88049 0.79254 0.77762 1.90809 1.55905 1.48923 1.37531 1.20576 0.93857 0.98389 1.01406 1.20807 0.92279 0.96237 0.97117 1.21468 0.94830 0.98419 0.96899 1.21483 1.00480 0.93522 0.95935 1.20845 0.90304 0.98231 0.96989 1.20585 0.94936 0.97430 1.00904 1.18379 0.83326 0.83710 0.78360 1.90848 1.85044 1.24007 1.32132 0.97379 0.94795 0.89122 0.92969 0.93892 0.90531 0.96226 0.88733 0.92622 0.86784 0.86591 0.84010 0.84055 0.84014 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.22 37.16 0.31 -3.87 16 2 C 0.21 5.33 2.31 -68.87 -0.16 5.17 16 3 H 0.04 1.11 7.93 -51.93 -0.41 0.70 16 4 C -0.50 -13.80 7.91 -34.44 -0.27 -14.07 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.40 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.95 4.68 -239.80 -1.12 -13.08 16 13 C 0.03 0.72 8.49 60.07 0.51 1.23 16 14 C 0.15 2.91 5.03 -6.61 -0.03 2.87 16 15 C -0.09 -1.59 12.44 -37.12 -0.46 -2.05 16 16 C -0.26 -4.26 13.68 -37.12 -0.51 -4.77 16 17 C 0.24 3.07 6.21 -6.83 -0.04 3.03 16 18 N -0.57 -7.55 2.58 -120.75 -0.31 -7.87 16 19 C 0.58 7.41 8.02 -12.45 -0.10 7.31 16 20 O -0.46 -6.81 17.68 5.41 0.10 -6.72 16 21 C -0.14 -1.44 6.40 -104.83 -0.67 -2.11 16 22 C -0.05 -0.34 10.09 -39.32 -0.40 -0.73 16 23 C -0.10 -0.50 10.03 -39.45 -0.40 -0.90 16 24 C -0.10 -0.51 10.04 -39.44 -0.40 -0.91 16 25 C -0.04 -0.35 10.09 -39.32 -0.40 -0.75 16 26 C -0.13 -1.45 6.40 -104.84 -0.67 -2.12 16 27 C 0.57 7.76 8.02 -12.46 -0.10 7.66 16 28 O -0.45 -7.29 17.68 5.41 0.10 -7.20 16 29 H 0.01 0.16 6.91 -51.93 -0.36 -0.20 16 30 H 0.03 0.79 6.42 -51.93 -0.33 0.45 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.04 0.82 7.29 -51.93 -0.38 0.44 16 34 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 35 H 0.02 0.39 6.46 -51.93 -0.34 0.05 16 36 H 0.09 1.78 7.93 -51.93 -0.41 1.37 16 37 H 0.06 1.02 7.06 -51.93 -0.37 0.65 16 38 H 0.11 1.17 7.97 -51.92 -0.41 0.76 16 39 H 0.12 1.28 7.96 -51.93 -0.41 0.86 16 40 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.14 0.31 8.06 -52.48 -0.42 -0.12 16 42 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -33.37 369.92 -9.24 -42.60 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.29 Total: -1.49 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.88 Total: -3.51 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.81 Total: -45.79 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.19 Total: -13.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.37 -9.24 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599311245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.330 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds