Wall clock time and date at job start Tue Mar 31 2020 14:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 C 1.50703 * 109.46925 * 119.99050 * 2 1 3 5 5 H 1.08008 * 119.99501 * 119.99801 * 4 2 1 6 6 C 1.37870 * 120.00545 * 300.00355 * 4 2 1 7 7 N 1.31514 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00405 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47024 * 89.99703 * 8 6 4 10 10 H 1.48498 * 109.47405 * 210.00174 * 8 6 4 11 11 H 1.48503 * 109.46704 * 330.00149 * 8 6 4 12 12 N 1.46893 * 109.47314 * 239.99703 * 2 1 3 13 13 C 1.46908 * 110.99786 * 306.04536 * 12 2 1 14 14 C 1.46898 * 111.00111 * 69.99787 * 12 2 1 15 15 C 1.47207 * 109.46905 * 169.99916 * 14 12 2 16 16 C 4.80850 * 108.11491 * 257.61359 * 2 1 3 17 17 C 6.22775 * 110.71356 * 254.26575 * 2 1 3 18 18 N 1.46500 * 109.47150 * 198.57155 * 17 16 15 19 19 C 1.34527 * 124.46231 * 270.27735 * 18 17 16 20 20 O 1.21446 * 125.70963 * 359.81517 * 19 18 17 21 21 C 1.47821 * 108.57647 * 180.17344 * 19 18 17 22 22 C 1.38562 * 134.29367 * 179.88273 * 21 19 18 23 23 C 1.38611 * 119.71824 * 179.64830 * 22 21 19 24 24 C 1.38225 * 120.46055 * 0.03750 * 23 22 21 25 25 C 1.38620 * 120.45740 * 359.97438 * 24 23 22 26 26 C 1.38559 * 119.71962 * 359.97438 * 25 24 23 27 27 C 1.34523 * 124.45711 * 90.00743 * 18 17 16 28 28 O 1.21451 * 125.71329 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.46819 * 60.00521 * 1 2 3 30 30 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46996 * 300.00390 * 1 2 3 32 32 H 0.96999 * 120.00408 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46864 * 183.95399 * 13 12 2 34 34 H 1.09001 * 109.46800 * 303.95042 * 13 12 2 35 35 H 1.08992 * 109.47249 * 63.95567 * 13 12 2 36 36 H 1.08994 * 109.47072 * 50.00646 * 14 12 2 37 37 H 1.09000 * 109.47161 * 290.00167 * 14 12 2 38 38 H 1.09008 * 109.46873 * 78.57668 * 17 16 15 39 39 H 1.08998 * 109.47376 * 318.57902 * 17 16 15 40 40 H 1.08005 * 120.14443 * 359.66834 * 22 21 19 41 41 H 1.08005 * 119.76997 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.77617 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.13832 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1199 4.0082 9 1 3.6296 -0.5454 4.4125 10 1 1.3430 -0.9488 5.1122 11 1 2.4858 -2.5658 3.7122 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0356 -1.3076 14 6 1.7529 0.0971 -2.4090 15 6 2.4607 -0.5023 -3.5521 16 6 3.0251 -0.9803 -4.4638 17 6 3.7327 -1.5797 -5.6069 18 7 5.0744 -1.0002 -5.7090 19 6 5.3757 0.1013 -6.4202 20 8 4.5914 0.7609 -7.0719 21 6 6.8229 0.3693 -6.2826 22 6 7.6787 1.3398 -6.7783 23 6 9.0229 1.3076 -6.4415 24 6 9.5148 0.3142 -5.6158 25 6 8.6705 -0.6634 -5.1127 26 6 7.3243 -0.6432 -5.4400 27 6 6.1662 -1.4965 -5.0998 28 8 6.1957 -2.4810 -4.3892 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7088 1.1617 3.4843 33 1 1.8665 -2.5522 -2.1646 34 1 1.6467 -2.5988 -0.3988 35 1 0.3556 -1.9522 -1.4397 36 1 2.1026 1.1187 -2.2604 37 1 0.6814 0.1051 -2.6087 38 1 3.1788 -1.3773 -6.5237 39 1 3.8123 -2.6569 -5.4608 40 1 7.2999 2.1183 -7.4241 41 1 9.6906 2.0639 -6.8271 42 1 10.5640 0.2999 -5.3602 43 1 9.0605 -1.4374 -4.4684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599311245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:41 Heat of formation + Delta-G solvation = 30.156785 kcal Electronic energy + Delta-G solvation = -26089.456723 eV Core-core repulsion = 22294.815605 eV Total energy + Delta-G solvation = -3794.641118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.43389 -39.85992 -39.50848 -39.20752 -37.23249 -35.49739 -34.55066 -32.83896 -32.11898 -30.83617 -29.44135 -27.91008 -27.29344 -26.25178 -25.35326 -24.08145 -23.25138 -21.39183 -21.08957 -18.93749 -18.84061 -18.42812 -18.22372 -17.49863 -17.21677 -16.69519 -16.48776 -16.26848 -15.80869 -15.64755 -15.48283 -15.42039 -15.24414 -15.03772 -14.67874 -14.43362 -14.30714 -13.72151 -13.64060 -13.24351 -13.20674 -12.93702 -12.80622 -12.69987 -12.65496 -12.47324 -12.10179 -11.90885 -11.78652 -11.55586 -11.33074 -11.15729 -11.03441 -10.90581 -10.51555 -10.21697 -10.21198 -9.01301 -8.13545 -6.24465 -1.04265 -0.01351 0.79952 0.95833 1.41373 1.41654 1.47161 1.53521 1.74057 1.88467 2.41944 2.54824 2.63319 2.99989 3.15538 3.16668 3.48398 3.59204 4.03383 4.05707 4.09412 4.18843 4.24224 4.27605 4.34699 4.41551 4.48856 4.53587 4.57287 4.67483 4.75957 4.84598 4.86986 4.93614 5.07087 5.08948 5.21949 5.27662 5.45281 5.46401 5.66371 5.70600 5.73825 6.01128 6.12526 6.36679 6.41179 6.45597 6.61155 6.86528 7.44425 8.92646 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.002635 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.979856 B =10624.996518 C =11483.852296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.215 3.785 3 H 0.012 0.988 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.548 5.548 13 C 0.043 3.957 14 C 0.158 3.842 15 C -0.133 4.133 16 C -0.232 4.232 17 C 0.235 3.765 18 N -0.579 5.579 19 C 0.575 3.425 20 O -0.489 6.489 21 C -0.160 4.160 22 C -0.044 4.044 23 C -0.082 4.082 24 C -0.082 4.082 25 C -0.048 4.048 26 C -0.161 4.161 27 C 0.570 3.430 28 O -0.491 6.491 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.183 0.817 42 H 0.181 0.819 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.170 -0.268 -22.336 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.030 0.970 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.272 5.272 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.135 4.135 16 C -0.235 4.235 17 C 0.116 3.884 18 N -0.321 5.321 19 C 0.366 3.634 20 O -0.362 6.362 21 C -0.164 4.164 22 C -0.062 4.062 23 C -0.099 4.099 24 C -0.100 4.100 25 C -0.066 4.066 26 C -0.165 4.165 27 C 0.361 3.639 28 O -0.364 6.364 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.200 0.800 42 H 0.198 0.802 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 17.104 -0.435 -22.117 27.962 hybrid contribution -1.364 -0.315 1.167 1.823 sum 15.740 -0.750 -20.950 26.214 Atomic orbital electron populations 1.22223 0.99618 0.99626 1.00449 1.19129 0.90558 0.93002 0.86429 0.97025 1.21315 1.30819 1.12548 0.90900 0.92949 1.25654 0.95304 0.95820 1.01695 1.69994 1.37656 1.24026 1.24165 0.85534 0.78053 0.78984 0.78923 1.20280 1.20592 1.19544 1.62242 1.59856 1.03438 1.01645 1.22163 0.96644 0.90534 1.01175 1.19069 0.96660 0.96478 0.84711 1.22676 0.96984 0.98475 0.95376 1.22707 1.01696 1.01092 0.97973 1.18611 0.77720 0.98145 0.93919 1.46721 1.10488 1.28326 1.46525 1.18816 0.89219 0.78548 0.76833 1.90781 1.56937 1.49694 1.38801 1.20520 0.92452 1.00093 1.03315 1.21196 0.93001 0.95459 0.96568 1.21984 0.94090 0.98591 0.95270 1.21972 1.01830 0.91897 0.94276 1.21186 0.89370 0.99197 0.96880 1.20511 0.95406 0.97632 1.02920 1.18920 0.84327 0.83333 0.77325 1.90810 1.85724 1.25783 1.34052 0.95172 0.94554 0.91603 0.92807 0.92453 0.92229 0.95350 0.89112 0.91519 0.84238 0.84909 0.82473 0.79967 0.80173 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.22 71.98 0.59 -7.17 16 2 C 0.22 11.20 2.31 44.17 0.10 11.30 16 3 H 0.01 0.67 7.93 -2.39 -0.02 0.66 16 4 C -0.52 -29.26 7.91 25.60 0.20 -29.06 16 5 H 0.05 3.01 7.12 -2.91 -0.02 2.99 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.00 11.32 21.44 0.24 -52.76 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.55 -25.16 4.68 -912.59 -4.27 -29.43 16 13 C 0.04 1.79 8.49 127.69 1.08 2.88 16 14 C 0.16 6.19 5.03 84.50 0.42 6.62 16 15 C -0.13 -4.96 12.44 31.13 0.39 -4.57 16 16 C -0.23 -7.73 13.68 31.13 0.43 -7.30 16 17 C 0.23 5.88 6.21 84.57 0.53 6.41 16 18 N -0.58 -15.49 2.58 -772.85 -1.99 -17.48 16 19 C 0.57 14.87 8.02 86.82 0.70 15.57 16 20 O -0.49 -14.58 17.68 -3.55 -0.06 -14.65 16 21 C -0.16 -3.20 6.40 -20.00 -0.13 -3.33 16 22 C -0.04 -0.53 10.09 22.44 0.23 -0.30 16 23 C -0.08 -0.47 10.03 22.36 0.22 -0.24 16 24 C -0.08 -0.52 10.04 22.36 0.22 -0.30 16 25 C -0.05 -0.65 10.09 22.44 0.23 -0.43 16 26 C -0.16 -3.38 6.40 -20.00 -0.13 -3.51 16 27 C 0.57 15.82 8.02 86.82 0.70 16.52 16 28 O -0.49 -16.47 17.68 -3.56 -0.06 -16.54 16 29 H 0.03 1.28 6.91 -2.39 -0.02 1.26 16 30 H 0.04 1.70 6.42 -2.39 -0.02 1.68 16 31 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.06 2.19 7.29 -2.39 -0.02 2.17 16 34 H 0.06 2.65 6.76 -2.39 -0.02 2.64 16 35 H 0.03 1.11 6.46 -2.39 -0.02 1.10 16 36 H 0.09 3.55 7.93 -2.39 -0.02 3.53 16 37 H 0.07 2.44 7.06 -2.39 -0.02 2.42 16 38 H 0.14 2.77 7.97 -2.38 -0.02 2.75 16 39 H 0.13 2.89 7.96 -2.39 -0.02 2.87 16 40 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 41 H 0.18 -0.37 8.06 -2.91 -0.02 -0.39 16 42 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 43 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -74.94 369.92 3.16 -71.79 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.05 Total: 8.26 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.23 Total: 4.30 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -6.02 Total: -99.67 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.13 Total: -31.18 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -74.94 3.16 -71.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599311245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.944 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds