Wall clock time and date at job start Tue Mar 31 2020 15:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08999 * 109.47529 * 2 1
4 4 C 1.50697 * 109.46998 * 239.99826 * 2 1 3
5 5 H 1.07996 * 120.00441 * 240.00533 * 4 2 1
6 6 C 1.37876 * 120.00103 * 60.00456 * 4 2 1
7 7 N 1.31518 * 119.99979 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 120.00293 * 179.97438 * 6 4 2
9 9 H 1.48497 * 109.47261 * 60.00193 * 8 6 4
10 10 H 1.48504 * 109.47281 * 179.97438 * 8 6 4
11 11 H 1.48499 * 109.46942 * 299.99826 * 8 6 4
12 12 N 1.46506 * 109.46743 * 120.00402 * 2 1 3
13 13 C 1.34778 * 119.99506 * 274.99351 * 12 2 1
14 14 O 1.21650 * 120.00352 * 5.12266 * 13 12 2
15 15 C 1.47084 * 119.99713 * 185.11277 * 13 12 2
16 16 C 1.39328 * 120.58534 * 174.19021 * 15 13 12
17 17 C 1.39473 * 118.95938 * 179.72622 * 16 15 13
18 18 C 1.35759 * 120.13058 * 0.29597 * 17 16 15
19 19 N 1.35433 * 121.23139 * 359.97438 * 18 17 16
20 20 C 1.46500 * 119.47262 * 180.02562 * 19 18 17
21 21 C 1.50693 * 109.47459 * 89.99816 * 20 19 18
22 22 C 1.38240 * 119.99902 * 269.72562 * 21 20 19
23 23 C 1.38233 * 119.99881 * 179.76969 * 22 21 20
24 24 C 1.38229 * 120.00068 * 0.50104 * 23 22 21
25 25 C 1.38242 * 120.00138 * 359.75168 * 24 23 22
26 26 C 1.38231 * 120.00297 * 90.00088 * 21 20 19
27 27 C 1.34654 * 121.05638 * 359.97438 * 19 18 17
28 28 O 1.21886 * 120.10690 * 180.02562 * 27 19 18
29 29 H 1.09000 * 109.46487 * 59.99537 * 1 2 3
30 30 H 1.08994 * 109.47117 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46728 * 300.00093 * 1 2 3
32 32 H 0.97004 * 120.00231 * 180.02562 * 7 6 4
33 33 H 0.96992 * 119.99647 * 95.00045 * 12 2 1
34 34 H 1.08001 * 120.52224 * 359.97438 * 16 15 13
35 35 H 1.07998 * 119.93610 * 180.27245 * 17 16 15
36 36 H 1.07995 * 119.38663 * 180.02562 * 18 17 16
37 37 H 1.09007 * 109.46851 * 209.99485 * 20 19 18
38 38 H 1.08998 * 109.47147 * 329.99239 * 20 19 18
39 39 H 1.08003 * 119.99696 * 359.97438 * 22 21 20
40 40 H 1.08004 * 119.99801 * 180.23167 * 23 22 21
41 41 H 1.08002 * 120.00032 * 179.72971 * 24 23 22
42 42 H 1.07998 * 119.99752 * 179.97438 * 25 24 23
43 43 H 1.08004 * 120.00016 * 359.97438 * 26 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8935 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5886 -1.1314
6 6 1.6993 -0.2394 -2.4827
7 7 0.9437 0.8303 -2.6034
8 14 2.3225 -1.1196 -4.0079
9 1 1.8280 -2.5197 -4.0082
10 1 1.8270 -0.4199 -5.2205
11 1 3.8075 -1.1190 -4.0077
12 7 2.0183 -0.6907 1.1962
13 6 2.1471 -0.0183 2.3571
14 8 1.7709 1.1358 2.4366
15 6 2.7422 -0.6801 3.5281
16 6 2.9920 0.0364 4.6966
17 6 3.5520 -0.6263 5.7886
18 6 3.8515 -1.9477 5.7034
19 7 3.6166 -2.6493 4.5690
20 6 3.9542 -4.0740 4.5196
21 6 2.7692 -4.8871 4.9728
22 6 2.6232 -5.2106 6.3089
23 6 1.5336 -5.9524 6.7253
24 6 0.5956 -6.3797 5.8042
25 6 0.7444 -6.0607 4.4674
26 6 1.8312 -5.3145 4.0517
27 6 3.0767 -2.0585 3.4861
28 8 2.8722 -2.7065 2.4742
29 1 -0.3632 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.7091 1.1615 -3.4844
33 1 2.2489 -1.6318 1.1525
34 1 2.7520 1.0877 4.7573
35 1 3.7481 -0.0872 6.7036
36 1 4.2844 -2.4491 6.5564
37 1 4.2151 -4.3503 3.4979
38 1 4.8017 -4.2695 5.1765
39 1 3.3586 -4.8808 7.0278
40 1 1.4176 -6.2019 7.7697
41 1 -0.2533 -6.9630 6.1290
42 1 0.0117 -6.3949 3.7478
43 1 1.9474 -5.0652 3.0073
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000604573405.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:00:56
Heat of formation + Delta-G solvation = -30.493819 kcal
Electronic energy + Delta-G solvation = -27201.055870 eV
Core-core repulsion = 23403.784745 eV
Total energy + Delta-G solvation = -3797.271126 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.62609 -40.42227 -39.78823 -38.22391 -36.70626 -35.72606 -34.22399 -32.53134
-31.81418 -31.44569 -30.39107 -27.81921 -27.40062 -25.87901 -23.99504 -23.51017
-23.04900 -22.17437 -21.39299 -19.48554 -18.54433 -18.27881 -17.85364 -17.64768
-17.07068 -16.86253 -16.64900 -16.13020 -15.98149 -15.87332 -15.43376 -15.31565
-14.98805 -14.45366 -14.31097 -14.21340 -13.78287 -13.61426 -13.45059 -13.41913
-13.11568 -13.03900 -12.95967 -12.88276 -12.76980 -12.34204 -12.17809 -12.12963
-11.90701 -11.29901 -11.06941 -11.03250 -10.84094 -10.60545 -9.84563 -9.79968
-9.71547 -9.02309 -8.21338 -6.39367 -0.50259 0.25066 0.47781 0.84689
1.37920 1.42417 1.50525 1.60245 1.86960 2.34812 2.75189 2.82232
2.89757 3.07274 3.51951 3.69485 3.81629 3.90348 4.02326 4.05662
4.14124 4.22553 4.28419 4.33367 4.51445 4.62648 4.66082 4.72437
4.85614 4.90367 4.98938 5.03230 5.04938 5.13658 5.25878 5.39012
5.50919 5.54152 5.58207 5.59722 5.61150 5.68471 5.93484 5.95285
6.06357 6.07948 6.66594 6.81658 7.10383 7.28761 7.62321 8.85516
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.013118 B = 0.003524 C = 0.003075
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2133.975993 B = 7943.210782 C = 9102.303536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.268 3.732
3 H -0.002 1.002
4 C -0.552 4.552
5 H 0.058 0.942
6 C 0.016 3.984
7 N -0.916 5.916
8 Si 0.977 3.023
9 H -0.267 1.267
10 H -0.275 1.275
11 H -0.270 1.270
12 N -0.702 5.702
13 C 0.548 3.452
14 O -0.612 6.612
15 C -0.325 4.325
16 C 0.069 3.931
17 C -0.238 4.238
18 C 0.186 3.814
19 N -0.479 5.479
20 C 0.128 3.872
21 C -0.126 4.126
22 C -0.094 4.094
23 C -0.127 4.127
24 C -0.118 4.118
25 C -0.145 4.145
26 C -0.119 4.119
27 C 0.522 3.478
28 O -0.576 6.576
29 H 0.073 0.927
30 H 0.029 0.971
31 H 0.012 0.988
32 H 0.268 0.732
33 H 0.408 0.592
34 H 0.141 0.859
35 H 0.202 0.798
36 H 0.236 0.764
37 H 0.087 0.913
38 H 0.161 0.839
39 H 0.170 0.830
40 H 0.155 0.845
41 H 0.139 0.861
42 H 0.119 0.881
43 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.570 -15.517 28.058 33.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.165 3.835
3 H 0.016 0.984
4 C -0.590 4.590
5 H 0.077 0.923
6 C -0.184 4.184
7 N -0.554 5.554
8 Si 0.800 3.200
9 H -0.192 1.192
10 H -0.200 1.200
11 H -0.195 1.195
12 N -0.358 5.358
13 C 0.337 3.663
14 O -0.498 6.498
15 C -0.332 4.332
16 C 0.045 3.955
17 C -0.260 4.260
18 C 0.057 3.943
19 N -0.185 5.185
20 C 0.008 3.992
21 C -0.127 4.127
22 C -0.112 4.112
23 C -0.144 4.144
24 C -0.136 4.136
25 C -0.163 4.163
26 C -0.138 4.138
27 C 0.325 3.675
28 O -0.461 6.461
29 H 0.092 0.908
30 H 0.048 0.952
31 H 0.031 0.969
32 H 0.077 0.923
33 H 0.252 0.748
34 H 0.159 0.841
35 H 0.218 0.782
36 H 0.253 0.747
37 H 0.105 0.895
38 H 0.178 0.822
39 H 0.187 0.813
40 H 0.173 0.827
41 H 0.157 0.843
42 H 0.137 0.863
43 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 8.144 -15.141 27.246 32.217
hybrid contribution -0.379 -0.220 -1.839 1.890
sum 7.766 -15.361 25.407 30.689
Atomic orbital electron populations
1.21861 0.98406 0.98819 0.99695 1.18366 0.91239 0.91711 0.82226
0.98434 1.21444 1.32902 1.13376 0.91263 0.92338 1.25846 0.94745
0.95643 1.02208 1.70043 1.36750 1.23737 1.24839 0.85339 0.78722
0.78576 0.77331 1.19215 1.19989 1.19467 1.46934 1.63836 1.15642
1.09389 1.18340 0.78454 0.85636 0.83826 1.90653 1.54364 1.19402
1.85343 1.20910 1.18885 0.94987 0.98405 1.22296 0.83179 1.00584
0.89404 1.21172 1.09300 0.94399 1.01110 1.23320 0.89353 0.92842
0.88816 1.45586 1.48957 1.11965 1.11987 1.21211 0.96781 0.75310
1.05856 1.20046 0.97159 1.00640 0.94828 1.21473 0.98672 0.96984
0.94055 1.21570 0.94116 0.97904 1.00843 1.21544 1.00036 0.99360
0.92675 1.21365 0.98027 0.99444 0.97463 1.21323 0.95232 0.97501
0.99772 1.16963 0.79365 0.87592 0.83564 1.90620 1.57711 1.65917
1.31847 0.90845 0.95151 0.96899 0.92250 0.74770 0.84087 0.78151
0.74738 0.89452 0.82166 0.81293 0.82728 0.84266 0.86340 0.88293
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -7.68 9.26 71.98 0.67 -7.01 16
2 C 0.27 16.61 2.52 44.24 0.11 16.72 16
3 H 0.00 -0.15 7.66 -2.39 -0.02 -0.17 16
4 C -0.55 -34.25 8.73 25.60 0.22 -34.03 16
5 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16
6 C 0.02 0.93 5.30 84.65 0.45 1.38 16
7 N -0.92 -56.88 11.32 21.45 0.24 -56.64 16
8 Si 0.98 46.34 29.54 68.60 2.03 48.36 16
9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16
12 N -0.70 -38.79 4.98 -449.67 -2.24 -41.03 16
13 C 0.55 28.06 7.70 86.56 0.67 28.72 16
14 O -0.61 -34.76 16.07 -4.19 -0.07 -34.83 16
15 C -0.32 -12.16 5.92 -19.79 -0.12 -12.28 16
16 C 0.07 1.79 9.69 22.83 0.22 2.01 16
17 C -0.24 -2.84 9.99 21.99 0.22 -2.62 16
18 C 0.19 1.58 10.25 83.56 0.86 2.44 16
19 N -0.48 -8.99 2.56 -653.78 -1.67 -10.66 16
20 C 0.13 1.79 5.44 85.63 0.47 2.25 16
21 C -0.13 -2.08 5.46 -19.87 -0.11 -2.19 16
22 C -0.09 -0.89 9.70 22.27 0.22 -0.68 16
23 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16
24 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16
25 C -0.14 -3.10 10.05 22.27 0.22 -2.88 16
26 C -0.12 -2.89 9.70 22.27 0.22 -2.67 16
27 C 0.52 17.37 7.43 85.17 0.63 18.00 16
28 O -0.58 -23.75 12.71 -4.95 -0.06 -23.81 16
29 H 0.07 4.56 6.07 -2.39 -0.01 4.55 16
30 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16
31 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16
32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16
33 H 0.41 21.92 5.14 -92.77 -0.48 21.44 16
34 H 0.14 3.74 7.71 -2.91 -0.02 3.72 16
35 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16
36 H 0.24 -1.31 8.02 -2.91 -0.02 -1.33 16
37 H 0.09 1.75 7.33 -2.38 -0.02 1.73 16
38 H 0.16 0.35 7.94 -2.39 -0.02 0.33 16
39 H 0.17 -0.02 8.06 -2.91 -0.02 -0.04 16
40 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16
41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16
42 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16
43 H 0.10 3.02 7.50 -2.91 -0.02 2.99 16
Total: -1.00 -94.34 365.66 4.17 -90.17
By element:
Atomic # 1 Polarization: 23.46 SS G_CDS: 0.56 Total: 24.02 kcal
Atomic # 6 Polarization: -0.97 SS G_CDS: 5.39 Total: 4.42 kcal
Atomic # 7 Polarization: -104.66 SS G_CDS: -3.67 Total: -108.33 kcal
Atomic # 8 Polarization: -58.51 SS G_CDS: -0.13 Total: -58.64 kcal
Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal
Total: -94.34 4.17 -90.17 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000604573405.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.675 kcal
(2) G-P(sol) polarization free energy of solvation -94.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds