Wall clock time and date at job start Tue Mar 31 2020 15:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46999 * 2 1 4 4 C 1.50699 * 109.46768 * 119.99873 * 2 1 3 5 5 H 1.07998 * 120.00123 * 120.00771 * 4 2 1 6 6 C 1.37876 * 119.99904 * 299.99796 * 4 2 1 7 7 N 1.31512 * 120.00307 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99731 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47194 * 90.00380 * 8 6 4 10 10 H 1.48510 * 109.46919 * 209.99888 * 8 6 4 11 11 H 1.48495 * 109.47290 * 330.00049 * 8 6 4 12 12 N 1.46491 * 109.47013 * 239.99759 * 2 1 3 13 13 C 1.34775 * 120.00391 * 85.00065 * 12 2 1 14 14 O 1.21517 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.48186 * 120.00627 * 179.97438 * 13 12 2 16 16 C 1.39099 * 119.70259 * 180.02562 * 15 13 12 17 17 C 1.39231 * 118.98722 * 179.97438 * 16 15 13 18 18 O 1.35743 * 120.81706 * 180.02562 * 17 16 15 19 19 C 1.42898 * 117.00188 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47171 * 180.02562 * 19 18 17 21 21 C 1.38234 * 119.99770 * 269.72826 * 20 19 18 22 22 C 1.38239 * 119.99901 * 179.76875 * 21 20 19 23 23 C 1.38240 * 119.99645 * 0.50240 * 22 21 20 24 24 C 1.38227 * 120.00205 * 359.74956 * 23 22 21 25 25 C 1.38232 * 119.99860 * 90.00268 * 20 19 18 26 26 C 1.39214 * 118.37100 * 0.26772 * 17 16 15 27 27 C 1.38321 * 119.28235 * 359.46437 * 26 17 16 28 28 N 1.31612 * 120.97354 * 0.55268 * 27 26 17 29 29 H 1.08993 * 109.47268 * 60.00500 * 1 2 3 30 30 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 300.00046 * 1 2 3 32 32 H 0.97004 * 120.00029 * 180.02562 * 7 6 4 33 33 H 0.97006 * 120.00203 * 264.99641 * 12 2 1 34 34 H 1.08010 * 120.50425 * 359.95360 * 16 15 13 35 35 H 1.09002 * 109.47259 * 300.00203 * 19 18 17 36 36 H 1.09001 * 109.47074 * 60.00225 * 19 18 17 37 37 H 1.08001 * 120.00330 * 359.97438 * 21 20 19 38 38 H 1.08001 * 119.99843 * 180.23314 * 22 21 20 39 39 H 1.08002 * 119.99612 * 179.72381 * 23 22 21 40 40 H 1.07996 * 120.00251 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00407 * 0.02562 * 25 20 19 42 42 H 1.07998 * 120.35820 * 179.70499 * 26 17 16 43 43 H 1.08007 * 119.51009 * 180.27382 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8577 1.1605 -2.4119 15 6 2.6416 -0.7168 -3.5669 16 6 2.7725 -0.0168 -4.7617 17 6 3.2390 -0.6876 -5.8891 18 8 3.3815 -0.0406 -7.0739 19 6 3.8672 -0.8075 -8.1776 20 6 3.9599 0.0717 -9.3981 21 6 2.8804 0.1813 -10.2545 22 6 2.9637 0.9915 -11.3715 23 6 4.1303 1.6839 -11.6376 24 6 5.2116 1.5701 -10.7840 25 6 5.1264 0.7640 -9.6642 26 6 3.5508 -2.0393 -5.7728 27 6 3.3994 -2.6656 -4.5488 28 7 2.9561 -2.0053 -3.5002 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7087 1.1614 3.4844 33 1 2.2491 -1.6318 -1.1525 34 1 2.5159 1.0311 -4.8142 35 1 4.8546 -1.2026 -7.9390 36 1 3.1834 -1.6331 -8.3752 37 1 1.9706 -0.3633 -10.0492 38 1 2.1190 1.0801 -12.0385 39 1 4.1970 2.3133 -12.5126 40 1 6.1230 2.1107 -10.9921 41 1 5.9715 0.6745 -8.9977 42 1 3.9106 -2.5920 -6.6280 43 1 3.6445 -3.7132 -4.4533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742597659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:31 Heat of formation + Delta-G solvation = -13.107336 kcal Electronic energy + Delta-G solvation = -25529.622692 eV Core-core repulsion = 21733.105501 eV Total energy + Delta-G solvation = -3796.517191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87597 -39.76954 -38.82360 -37.79903 -34.81113 -32.95772 -32.37412 -31.40415 -31.34507 -31.07114 -28.77634 -27.07222 -25.22161 -24.28900 -23.38840 -23.03895 -21.91861 -21.08219 -19.67128 -18.66848 -17.61768 -17.12429 -16.52731 -16.45985 -15.86012 -15.58942 -15.41255 -15.07213 -14.95353 -14.74131 -14.39272 -14.08656 -13.84878 -13.83660 -13.37576 -13.19137 -13.05406 -12.85275 -12.34133 -11.87450 -11.79797 -11.62690 -11.40178 -11.38522 -11.04535 -10.94233 -10.72149 -10.28735 -10.18649 -9.82510 -9.35337 -9.34184 -9.25772 -9.15038 -9.01264 -8.99512 -8.50780 -7.87433 -6.07865 -4.16510 0.73292 0.75231 0.97170 1.24942 2.72736 3.19825 3.28936 3.35095 3.37881 3.47754 3.90921 4.14778 4.22028 4.31230 4.35767 4.46655 4.53344 4.59363 4.68764 4.72737 4.76002 4.84369 5.06361 5.08080 5.18439 5.24504 5.48986 5.50912 5.59116 5.62493 5.73833 5.92324 6.00234 6.07175 6.10028 6.38622 6.52622 6.86980 6.98986 7.01430 7.18057 7.45785 7.58002 7.72782 7.86174 7.98373 8.18173 8.70500 8.80608 9.11392 9.50317 10.98270 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.001975 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.570804 B =14172.612199 C =14542.712782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.051 0.949 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.680 5.680 13 C 0.552 3.448 14 O -0.545 6.545 15 C 0.130 3.870 16 C -0.149 4.149 17 C 0.162 3.838 18 O -0.301 6.301 19 C 0.100 3.900 20 C -0.098 4.098 21 C -0.094 4.094 22 C -0.124 4.124 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.255 4.255 27 C 0.135 3.865 28 N -0.480 5.480 29 H 0.015 0.985 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 -5.188 -28.130 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.327 5.327 13 C 0.334 3.666 14 O -0.424 6.424 15 C -0.007 4.007 16 C -0.170 4.170 17 C 0.109 3.891 18 O -0.212 6.212 19 C 0.025 3.975 20 C -0.098 4.098 21 C -0.112 4.112 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.142 4.142 25 C -0.112 4.112 26 C -0.276 4.276 27 C -0.024 4.024 28 N -0.195 5.195 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.235 0.765 34 H 0.172 0.828 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.780 -4.406 -27.226 28.401 hybrid contribution 0.617 -0.716 -0.129 0.954 sum 7.397 -5.122 -27.355 28.797 Atomic orbital electron populations 1.22081 0.98176 0.99309 1.01005 1.18864 0.91254 0.94095 0.79860 0.93122 1.21216 1.32350 1.13258 0.90156 0.91880 1.24889 0.94826 0.95002 0.99048 1.69904 1.35900 1.22522 1.23849 0.86423 0.78539 0.79893 0.82090 1.20594 1.21115 1.19797 1.46445 1.62365 1.14328 1.09582 1.17802 0.79575 0.86325 0.82886 1.90752 1.51854 1.15155 1.84617 1.21475 0.95495 0.89745 0.94012 1.21442 1.02615 1.02953 0.90024 1.19154 0.93353 0.90824 0.85769 1.86172 1.80421 1.38573 1.16068 1.21657 0.99884 0.92934 0.83030 1.19459 0.94983 1.00041 0.95286 1.21115 0.97655 0.98148 0.94295 1.21185 0.98187 0.97188 0.97600 1.21266 0.93326 0.98803 0.99385 1.21184 0.99065 0.99007 0.94899 1.21118 0.97484 0.95504 0.97093 1.22328 1.09438 0.94544 1.01307 1.22592 0.92830 0.99977 0.87034 1.67697 1.11893 1.08022 1.31867 0.96558 0.95307 0.88982 0.92601 0.76484 0.82776 0.90724 0.90728 0.85689 0.85652 0.85801 0.85650 0.85679 0.84274 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.42 16 2 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.48 8.73 -34.44 -0.30 -14.78 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.68 -15.46 5.06 -55.77 -0.28 -15.74 16 13 C 0.55 12.12 7.78 -12.17 -0.09 12.02 16 14 O -0.55 -13.58 15.98 5.35 0.09 -13.49 16 15 C 0.13 2.32 6.75 -83.04 -0.56 1.76 16 16 C -0.15 -2.36 9.60 -38.89 -0.37 -2.74 16 17 C 0.16 2.08 6.73 -38.85 -0.26 1.82 16 18 O -0.30 -3.54 10.13 -18.94 -0.19 -3.73 16 19 C 0.10 0.80 4.89 36.01 0.18 0.97 16 20 C -0.10 -0.81 5.51 -104.62 -0.58 -1.39 16 21 C -0.09 -0.73 9.70 -39.58 -0.38 -1.11 16 22 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 23 C -0.11 -0.72 10.05 -39.58 -0.40 -1.12 16 24 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 25 C -0.09 -0.73 9.70 -39.58 -0.38 -1.12 16 26 C -0.26 -2.66 9.12 -39.19 -0.36 -3.01 16 27 C 0.14 1.58 11.17 -17.61 -0.20 1.39 16 28 N -0.48 -7.59 9.54 -9.87 -0.09 -7.69 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.40 8.37 7.87 -40.82 -0.32 8.05 16 34 H 0.15 2.53 7.64 -52.48 -0.40 2.13 16 35 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 36 H 0.07 0.48 7.64 -51.93 -0.40 0.08 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 0.95 6.45 -52.49 -0.34 0.61 16 43 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -32.64 371.40 -9.20 -41.84 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.49 Total: 6.64 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -4.43 Total: -4.83 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.25 Total: -48.02 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.11 Total: -17.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.64 -9.20 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742597659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.731 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds