Wall clock time and date at job start Tue Mar 31 2020 15:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46999 * 2 1 4 4 C 1.50699 * 109.46768 * 119.99873 * 2 1 3 5 5 H 1.07998 * 120.00123 * 120.00771 * 4 2 1 6 6 C 1.37876 * 119.99904 * 299.99796 * 4 2 1 7 7 N 1.31512 * 120.00307 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99731 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47194 * 90.00380 * 8 6 4 10 10 H 1.48510 * 109.46919 * 209.99888 * 8 6 4 11 11 H 1.48495 * 109.47290 * 330.00049 * 8 6 4 12 12 N 1.46491 * 109.47013 * 239.99759 * 2 1 3 13 13 C 1.34775 * 120.00391 * 85.00065 * 12 2 1 14 14 O 1.21517 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.48186 * 120.00627 * 179.97438 * 13 12 2 16 16 C 1.39099 * 119.70259 * 180.02562 * 15 13 12 17 17 C 1.39231 * 118.98722 * 179.97438 * 16 15 13 18 18 O 1.35743 * 120.81706 * 180.02562 * 17 16 15 19 19 C 1.42898 * 117.00188 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47171 * 180.02562 * 19 18 17 21 21 C 1.38234 * 119.99770 * 269.72826 * 20 19 18 22 22 C 1.38239 * 119.99901 * 179.76875 * 21 20 19 23 23 C 1.38240 * 119.99645 * 0.50240 * 22 21 20 24 24 C 1.38227 * 120.00205 * 359.74956 * 23 22 21 25 25 C 1.38232 * 119.99860 * 90.00268 * 20 19 18 26 26 C 1.39214 * 118.37100 * 0.26772 * 17 16 15 27 27 C 1.38321 * 119.28235 * 359.46437 * 26 17 16 28 28 N 1.31612 * 120.97354 * 0.55268 * 27 26 17 29 29 H 1.08993 * 109.47268 * 60.00500 * 1 2 3 30 30 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 300.00046 * 1 2 3 32 32 H 0.97004 * 120.00029 * 180.02562 * 7 6 4 33 33 H 0.97006 * 120.00203 * 264.99641 * 12 2 1 34 34 H 1.08010 * 120.50425 * 359.95360 * 16 15 13 35 35 H 1.09002 * 109.47259 * 300.00203 * 19 18 17 36 36 H 1.09001 * 109.47074 * 60.00225 * 19 18 17 37 37 H 1.08001 * 120.00330 * 359.97438 * 21 20 19 38 38 H 1.08001 * 119.99843 * 180.23314 * 22 21 20 39 39 H 1.08002 * 119.99612 * 179.72381 * 23 22 21 40 40 H 1.07996 * 120.00251 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00407 * 0.02562 * 25 20 19 42 42 H 1.07998 * 120.35820 * 179.70499 * 26 17 16 43 43 H 1.08007 * 119.51009 * 180.27382 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8577 1.1605 -2.4119 15 6 2.6416 -0.7168 -3.5669 16 6 2.7725 -0.0168 -4.7617 17 6 3.2390 -0.6876 -5.8891 18 8 3.3815 -0.0406 -7.0739 19 6 3.8672 -0.8075 -8.1776 20 6 3.9599 0.0717 -9.3981 21 6 2.8804 0.1813 -10.2545 22 6 2.9637 0.9915 -11.3715 23 6 4.1303 1.6839 -11.6376 24 6 5.2116 1.5701 -10.7840 25 6 5.1264 0.7640 -9.6642 26 6 3.5508 -2.0393 -5.7728 27 6 3.3994 -2.6656 -4.5488 28 7 2.9561 -2.0053 -3.5002 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7087 1.1614 3.4844 33 1 2.2491 -1.6318 -1.1525 34 1 2.5159 1.0311 -4.8142 35 1 4.8546 -1.2026 -7.9390 36 1 3.1834 -1.6331 -8.3752 37 1 1.9706 -0.3633 -10.0492 38 1 2.1190 1.0801 -12.0385 39 1 4.1970 2.3133 -12.5126 40 1 6.1230 2.1107 -10.9921 41 1 5.9715 0.6745 -8.9977 42 1 3.9106 -2.5920 -6.6280 43 1 3.6445 -3.7132 -4.4533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742597659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:30 Heat of formation + Delta-G solvation = -33.633363 kcal Electronic energy + Delta-G solvation = -25530.512767 eV Core-core repulsion = 21733.105501 eV Total energy + Delta-G solvation = -3797.407267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92669 -40.69981 -39.98797 -38.91300 -36.79861 -34.40713 -33.57171 -32.64104 -32.03765 -31.84485 -30.67452 -27.76126 -27.35280 -25.58178 -24.40964 -23.54702 -23.09880 -22.19940 -21.36584 -20.06935 -18.61465 -18.32695 -17.68030 -17.25827 -17.16685 -16.87979 -16.66816 -16.27504 -16.14948 -15.94426 -15.56882 -15.39360 -14.87804 -14.70034 -14.47533 -14.35316 -14.25472 -13.90175 -13.70704 -13.58095 -13.00512 -12.89577 -12.77209 -12.62253 -12.54602 -12.27632 -12.13292 -11.97708 -11.90270 -11.25347 -11.13842 -10.64531 -10.59392 -10.37328 -10.00082 -9.86932 -9.85376 -9.79479 -8.17425 -6.35012 -0.43426 0.19976 0.22525 0.45300 1.45785 1.46891 1.58044 1.77619 1.88909 2.34218 2.52344 2.83562 2.93444 3.12645 3.24563 3.55247 3.65532 3.81673 3.87936 3.98794 4.08115 4.19635 4.23601 4.25707 4.30612 4.53879 4.58028 4.69781 4.69961 4.75424 4.90033 4.91097 5.00790 5.05633 5.10372 5.34550 5.41330 5.49729 5.56357 5.57062 5.57305 5.65754 5.86294 6.03372 6.06713 6.13270 6.66649 6.70629 6.96292 7.27268 7.42910 8.89221 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.001975 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.570804 B =14172.612199 C =14542.712782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.266 3.734 3 H 0.003 0.997 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.976 3.024 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.260 1.260 12 N -0.680 5.680 13 C 0.549 3.451 14 O -0.587 6.587 15 C 0.107 3.893 16 C -0.163 4.163 17 C 0.166 3.834 18 O -0.317 6.317 19 C 0.093 3.907 20 C -0.115 4.115 21 C -0.108 4.108 22 C -0.133 4.133 23 C -0.116 4.116 24 C -0.133 4.133 25 C -0.108 4.108 26 C -0.225 4.225 27 C 0.137 3.863 28 N -0.500 5.500 29 H 0.013 0.987 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.267 0.733 33 H 0.411 0.589 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.188 0.812 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -8.079 -30.020 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.163 3.837 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.554 5.554 8 Si 0.801 3.199 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.327 5.327 13 C 0.334 3.666 14 O -0.469 6.469 15 C -0.029 4.029 16 C -0.185 4.185 17 C 0.112 3.888 18 O -0.229 6.229 19 C 0.019 3.981 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.151 4.151 23 C -0.134 4.134 24 C -0.151 4.151 25 C -0.126 4.126 26 C -0.245 4.245 27 C -0.022 4.022 28 N -0.215 5.215 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.152 0.848 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.205 0.795 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 8.247 -7.323 -29.153 31.169 hybrid contribution 0.219 0.203 0.215 0.368 sum 8.467 -7.120 -28.937 30.980 Atomic orbital electron populations 1.21900 0.97856 0.99614 0.99822 1.18517 0.91508 0.92103 0.81576 0.97878 1.21490 1.32763 1.13630 0.90651 0.91013 1.25827 0.94808 0.95642 1.02323 1.70049 1.36804 1.23873 1.24719 0.85281 0.77785 0.79127 0.77746 1.20303 1.20689 1.18428 1.46192 1.62845 1.14612 1.09046 1.18446 0.78350 0.85993 0.83849 1.90707 1.53496 1.17138 1.85539 1.20656 0.98813 0.90990 0.92470 1.21297 1.03862 1.02290 0.91058 1.19080 0.92711 0.91637 0.85333 1.86167 1.80426 1.39922 1.16371 1.21990 1.01416 0.93104 0.81575 1.19622 0.95405 1.00835 0.95678 1.21357 0.97975 0.98596 0.94676 1.21489 0.98980 0.96917 0.97725 1.21597 0.93095 0.98736 0.99958 1.21484 0.99966 0.98937 0.94740 1.21357 0.97821 0.95782 0.97685 1.22791 1.06217 0.93180 1.02310 1.23367 0.91034 1.01501 0.86287 1.67616 1.12883 1.06918 1.34105 0.96839 0.94052 0.90953 0.92422 0.75324 0.84838 0.88626 0.88558 0.84846 0.83971 0.83811 0.84008 0.84910 0.79516 0.77598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.11 9.26 71.98 0.67 -6.44 16 2 C 0.27 14.70 2.56 44.25 0.11 14.81 16 3 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 4 C -0.55 -30.34 8.73 25.60 0.22 -30.12 16 5 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 8 Si 0.98 43.06 29.54 68.60 2.03 45.09 16 9 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 12 N -0.68 -32.08 5.06 -448.66 -2.27 -34.35 16 13 C 0.55 25.39 7.78 86.89 0.68 26.07 16 14 O -0.59 -31.43 15.98 -3.77 -0.06 -31.49 16 15 C 0.11 3.89 6.75 41.85 0.28 4.17 16 16 C -0.16 -5.29 9.60 22.72 0.22 -5.07 16 17 C 0.17 3.96 6.73 22.74 0.15 4.11 16 18 O -0.32 -6.91 10.13 -90.67 -0.92 -7.82 16 19 C 0.09 1.20 4.89 71.24 0.35 1.55 16 20 C -0.12 -1.72 5.51 -19.87 -0.11 -1.83 16 21 C -0.11 -1.51 9.70 22.27 0.22 -1.30 16 22 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 23 C -0.12 -1.34 10.05 22.27 0.22 -1.11 16 24 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 25 C -0.11 -1.53 9.70 22.27 0.22 -1.32 16 26 C -0.22 -3.71 9.12 22.52 0.21 -3.51 16 27 C 0.14 2.68 11.17 84.75 0.95 3.63 16 28 N -0.50 -15.13 9.54 -185.13 -1.77 -16.90 16 29 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 4.14 6.07 -2.39 -0.01 4.13 16 32 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.41 17.47 7.87 -92.70 -0.73 16.74 16 34 H 0.13 4.76 7.64 -2.91 -0.02 4.74 16 35 H 0.10 0.83 7.66 -2.39 -0.02 0.82 16 36 H 0.10 0.83 7.64 -2.39 -0.02 0.81 16 37 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.19 1.32 6.45 -2.91 -0.02 1.30 16 43 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -75.24 371.40 2.84 -72.40 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.31 Total: 24.42 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.28 Total: 2.04 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -3.79 Total: -104.64 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.98 Total: -39.31 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -75.24 2.84 -72.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742597659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.768 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds