Wall clock time and date at job start Tue Mar 31 2020 14:53:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 109.47149 * 2 1
4 4 O 1.42896 * 109.46974 * 120.00590 * 2 1 3
5 5 C 1.53004 * 109.46764 * 240.00160 * 2 1 3
6 6 C 1.52997 * 109.46929 * 174.99938 * 5 2 1
7 7 H 1.09003 * 109.47189 * 54.99899 * 6 5 2
8 8 C 1.53001 * 109.47332 * 175.00057 * 6 5 2
9 9 N 1.46504 * 109.47293 * 295.00251 * 6 5 2
10 10 C 1.34776 * 119.99833 * 154.99946 * 9 6 5
11 11 O 1.21596 * 120.00295 * 0.02562 * 10 9 6
12 12 N 1.34775 * 119.99983 * 179.97438 * 10 9 6
13 13 C 1.40129 * 120.00369 * 183.92037 * 12 10 9
14 14 C 1.38701 * 120.07578 * 334.48112 * 13 12 10
15 15 C 1.38195 * 120.02073 * 180.24741 * 14 13 12
16 16 C 1.38546 * 120.17508 * 359.45455 * 15 14 13
17 17 F 1.35105 * 119.92280 * 180.27264 * 16 15 14
18 18 C 1.38338 * 120.15315 * 0.29538 * 16 15 14
19 19 C 1.38739 * 119.97474 * 359.97398 * 18 16 15
20 20 O 1.35782 * 120.08543 * 179.97438 * 19 18 16
21 21 C 1.34805 * 117.00167 * 354.37913 * 20 19 18
22 22 H 1.07994 * 120.00082 * 354.62468 * 21 20 19
23 23 C 1.38634 * 119.99853 * 174.62507 * 21 20 19
24 24 N 1.31570 * 120.00351 * 359.97438 * 23 21 20
25 25 Si 1.86806 * 119.99632 * 180.02562 * 23 21 20
26 26 H 1.48492 * 109.47292 * 90.00034 * 25 23 21
27 27 H 1.48502 * 109.46901 * 210.00112 * 25 23 21
28 28 H 1.48494 * 109.47211 * 329.99558 * 25 23 21
29 29 H 1.08996 * 109.47580 * 179.97438 * 1 2 3
30 30 H 1.09007 * 109.47170 * 299.99894 * 1 2 3
31 31 H 1.08998 * 109.47144 * 59.99368 * 1 2 3
32 32 H 0.96702 * 114.00397 * 59.99701 * 4 2 1
33 33 H 1.09005 * 109.47105 * 55.00310 * 5 2 1
34 34 H 1.08994 * 109.47557 * 294.99985 * 5 2 1
35 35 H 1.08998 * 109.47070 * 179.97438 * 8 6 5
36 36 H 1.08992 * 109.46728 * 300.00480 * 8 6 5
37 37 H 1.09001 * 109.47014 * 60.00329 * 8 6 5
38 38 H 0.96996 * 120.00105 * 334.99887 * 9 6 5
39 39 H 0.97004 * 119.99974 * 3.92225 * 12 10 9
40 40 H 1.08001 * 119.98571 * 359.97438 * 14 13 12
41 41 H 1.08003 * 119.91206 * 179.71986 * 15 14 13
42 42 H 1.07995 * 120.01420 * 179.97438 * 18 16 15
43 43 H 0.97001 * 120.00049 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.0399 -0.7212 -1.2493
6 6 3.5647 -0.6133 -1.3138
7 1 3.9953 -0.9923 -0.3869
8 6 4.0851 -1.4382 -2.4926
9 7 3.9479 0.7894 -1.4925
10 6 5.1612 1.2135 -1.0867
11 8 5.9379 0.4318 -0.5728
12 7 5.5139 2.5038 -1.2516
13 6 6.8041 2.9272 -0.9056
14 6 7.5294 2.2346 0.0525
15 6 8.7997 2.6562 0.3966
16 6 9.3571 3.7638 -0.2215
17 9 10.6015 4.1682 0.1149
18 6 8.6421 4.4569 -1.1817
19 6 7.3641 4.0425 -1.5280
20 8 6.6602 4.7215 -2.4698
21 6 7.2112 5.8557 -2.9464
22 1 8.1277 6.2326 -2.5171
23 6 6.6014 6.5383 -3.9876
24 7 5.4852 6.0789 -4.5110
25 14 7.3655 8.1097 -4.6483
26 1 8.3076 7.7781 -5.7471
27 1 6.2959 9.0007 -5.1654
28 1 8.1000 8.7996 -3.5577
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 1.7209 -1.5953 1.2328
33 1 1.6053 -0.2616 -2.1371
34 1 1.7516 -1.7715 -1.2058
35 1 5.1713 -1.3609 -2.5388
36 1 3.7999 -2.4818 -2.3597
37 1 3.6545 -1.0592 -3.4195
38 1 3.3285 1.4129 -1.9028
39 1 4.8746 3.1394 -1.6097
40 1 7.0995 1.3681 0.5330
41 1 9.3612 2.1182 1.1461
42 1 9.0786 5.3203 -1.6618
43 1 5.0583 6.5568 -5.2392
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000783066050.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:53:17
Heat of formation + Delta-G solvation = -132.124084 kcal
Electronic energy + Delta-G solvation = -27832.123353 eV
Core-core repulsion = 23599.675983 eV
Total energy + Delta-G solvation = -4232.447369 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 326.147 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-48.18343 -40.34397 -39.00775 -38.11930 -36.43492 -35.35895 -34.00793 -32.38210
-31.94136 -30.63951 -29.29683 -27.92146 -27.02079 -25.46997 -22.92070 -22.13776
-21.77923 -20.97866 -20.44284 -18.37951 -18.25315 -17.59049 -16.91970 -16.44113
-16.00539 -15.44218 -15.27915 -15.16430 -14.96860 -14.78926 -14.54436 -14.27968
-13.96182 -13.62731 -13.51702 -13.37830 -13.16407 -12.93671 -12.58874 -12.41434
-12.26374 -12.12117 -12.01585 -11.77108 -11.64552 -11.35787 -11.15986 -10.97679
-10.87424 -10.70707 -10.51798 -10.15774 -9.79897 -9.75427 -9.36171 -8.94522
-8.93130 -7.81020 -6.99609 -6.58515 -4.15920 1.92723 2.18554 2.92912
3.07405 3.09095 3.13170 3.51289 3.86654 4.10259 4.37007 4.42946
4.54463 4.63098 4.84558 4.90236 5.00147 5.05107 5.13961 5.17266
5.27326 5.39466 5.49393 5.56057 5.64149 5.68040 5.79989 5.80742
5.88795 6.02959 6.09617 6.23431 6.27364 6.58922 6.73328 6.76070
6.96624 7.03366 7.12724 7.19757 7.35517 7.44933 7.73854 7.86227
8.32103 8.87272 8.90616 9.50099 10.58860
Molecular weight = 326.15amu
Principal moments of inertia in cm(-1)
A = 0.010925 B = 0.003533 C = 0.002878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2562.366265 B = 7922.275654 C = 9727.835479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.100 3.900
3 H 0.100 0.900
4 O -0.558 6.558
5 C -0.160 4.160
6 C 0.164 3.836
7 H 0.096 0.904
8 C -0.166 4.166
9 N -0.741 5.741
10 C 0.706 3.294
11 O -0.583 6.583
12 N -0.663 5.663
13 C 0.083 3.917
14 C -0.066 4.066
15 C -0.225 4.225
16 C 0.122 3.878
17 F -0.153 7.153
18 C -0.256 4.256
19 C 0.153 3.847
20 O -0.172 6.172
21 C -0.391 4.391
22 H 0.094 0.906
23 C 0.043 3.957
24 N -0.862 5.862
25 Si 0.941 3.059
26 H -0.272 1.272
27 H -0.277 1.277
28 H -0.266 1.266
29 H 0.057 0.943
30 H 0.063 0.937
31 H 0.066 0.934
32 H 0.371 0.629
33 H 0.078 0.922
34 H 0.081 0.919
35 H 0.064 0.936
36 H 0.061 0.939
37 H 0.055 0.945
38 H 0.395 0.605
39 H 0.412 0.588
40 H 0.158 0.842
41 H 0.122 0.878
42 H 0.142 0.858
43 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.300 -11.352 4.959 15.490
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.041 3.959
3 H 0.118 0.882
4 O -0.362 6.362
5 C -0.199 4.199
6 C 0.059 3.941
7 H 0.114 0.886
8 C -0.224 4.224
9 N -0.397 5.397
10 C 0.407 3.593
11 O -0.461 6.461
12 N -0.309 5.309
13 C -0.013 4.013
14 C -0.087 4.087
15 C -0.245 4.245
16 C 0.102 3.898
17 F -0.132 7.132
18 C -0.277 4.277
19 C 0.097 3.903
20 O -0.076 6.076
21 C -0.467 4.467
22 H 0.111 0.889
23 C -0.162 4.162
24 N -0.496 5.496
25 Si 0.766 3.234
26 H -0.198 1.198
27 H -0.202 1.202
28 H -0.191 1.191
29 H 0.076 0.924
30 H 0.082 0.918
31 H 0.085 0.915
32 H 0.217 0.783
33 H 0.097 0.903
34 H 0.100 0.900
35 H 0.084 0.916
36 H 0.080 0.920
37 H 0.074 0.926
38 H 0.229 0.771
39 H 0.248 0.752
40 H 0.175 0.825
41 H 0.140 0.860
42 H 0.160 0.840
43 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -8.723 -11.456 5.218 15.315
hybrid contribution -0.223 1.047 -1.069 1.513
sum -8.946 -10.409 4.149 14.339
Atomic orbital electron populations
1.22521 0.96519 1.02386 1.02920 1.21945 0.92483 0.97207 0.84304
0.88175 1.86678 1.77057 1.28721 1.43791 1.22659 0.95631 1.02140
0.99444 1.20712 0.93186 0.80351 0.99830 0.88605 1.22226 1.02669
0.99343 0.98195 1.45176 1.16444 1.11290 1.66744 1.15858 0.82166
0.82016 0.79270 1.90790 1.51066 1.54569 1.49703 1.42226 1.13498
1.08496 1.66679 1.16740 0.86267 0.97751 1.00501 1.21103 0.93357
0.99643 0.94573 1.20546 0.97932 0.99695 1.06313 1.17484 0.79789
0.95413 0.97120 1.91404 1.39794 1.90400 1.91574 1.20816 0.96212
1.06010 1.04668 1.18737 0.89700 0.91631 0.90240 1.83922 1.42333
1.34785 1.46512 1.21328 1.10175 0.97811 1.17356 0.88911 1.25258
0.95993 0.99530 0.95408 1.70008 1.16497 1.39094 1.24047 0.85696
0.78608 0.79733 0.79399 1.19803 1.20206 1.19057 0.92415 0.91782
0.91485 0.78267 0.90316 0.90044 0.91642 0.92029 0.92616 0.77120
0.75250 0.82462 0.86021 0.84044 0.91934
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.23 9.53 37.16 0.35 -0.88 16
2 C 0.10 0.84 3.53 -26.73 -0.09 0.75 16
3 H 0.10 1.01 7.62 -51.93 -0.40 0.61 16
4 O -0.56 -5.53 12.79 -35.23 -0.45 -5.98 16
5 C -0.16 -1.20 4.43 -26.73 -0.12 -1.32 16
6 C 0.16 1.80 2.53 -67.93 -0.17 1.63 16
7 H 0.10 1.27 7.13 -51.93 -0.37 0.90 16
8 C -0.17 -1.78 9.48 37.16 0.35 -1.43 16
9 N -0.74 -9.60 4.45 -58.67 -0.26 -9.86 16
10 C 0.71 12.30 8.42 -86.92 -0.73 11.57 16
11 O -0.58 -11.62 12.93 5.28 0.07 -11.55 16
12 N -0.66 -12.42 5.29 -14.07 -0.07 -12.50 16
13 C 0.08 1.76 6.48 -83.44 -0.54 1.22 16
14 C -0.07 -1.33 8.79 -39.43 -0.35 -1.68 16
15 C -0.22 -4.34 10.02 -39.48 -0.40 -4.73 16
16 C 0.12 2.51 7.29 -39.43 -0.29 2.22 16
17 F -0.15 -3.01 17.26 2.25 0.04 -2.97 16
18 C -0.26 -5.71 9.11 -39.36 -0.36 -6.07 16
19 C 0.15 3.57 6.66 -38.94 -0.26 3.31 16
20 O -0.17 -4.51 9.18 0.02 0.00 -4.51 16
21 C -0.39 -10.35 9.44 30.88 0.29 -10.05 16
22 H 0.09 2.32 5.29 -52.49 -0.28 2.05 16
23 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16
24 N -0.86 -23.49 13.67 55.48 0.76 -22.73 16
25 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16
26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16
28 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16
29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
30 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16
31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.37 2.15 9.05 45.56 0.41 2.57 16
33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
38 H 0.39 4.32 8.62 -40.82 -0.35 3.96 16
39 H 0.41 7.38 8.38 -40.82 -0.34 7.04 16
40 H 0.16 3.14 5.52 -52.49 -0.29 2.85 16
41 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16
42 H 0.14 3.15 5.71 -52.49 -0.30 2.85 16
43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
LS Contribution 366.48 15.07 5.52 5.52
Total: -1.00 -31.46 366.48 -6.68 -38.14
By element:
Atomic # 1 Polarization: 20.99 SS G_CDS: -4.85 Total: 16.14 kcal
Atomic # 6 Polarization: -2.05 SS G_CDS: -2.40 Total: -4.45 kcal
Atomic # 7 Polarization: -45.51 SS G_CDS: 0.42 Total: -45.09 kcal
Atomic # 8 Polarization: -21.65 SS G_CDS: -0.38 Total: -22.04 kcal
Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal
Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -31.46 -6.68 -38.14 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000783066050.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.982 kcal
(2) G-P(sol) polarization free energy of solvation -31.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.447 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds