Wall clock time and date at job start Tue Mar 31 2020 14:53:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 109.47149 * 2 1
4 4 O 1.42896 * 109.46974 * 120.00590 * 2 1 3
5 5 C 1.53004 * 109.46764 * 240.00160 * 2 1 3
6 6 C 1.52997 * 109.46929 * 174.99938 * 5 2 1
7 7 H 1.09003 * 109.47189 * 54.99899 * 6 5 2
8 8 C 1.53001 * 109.47332 * 175.00057 * 6 5 2
9 9 N 1.46504 * 109.47293 * 295.00251 * 6 5 2
10 10 C 1.34776 * 119.99833 * 154.99946 * 9 6 5
11 11 O 1.21596 * 120.00295 * 0.02562 * 10 9 6
12 12 N 1.34775 * 119.99983 * 179.97438 * 10 9 6
13 13 C 1.40129 * 120.00369 * 183.92037 * 12 10 9
14 14 C 1.38701 * 120.07578 * 334.48112 * 13 12 10
15 15 C 1.38195 * 120.02073 * 180.24741 * 14 13 12
16 16 C 1.38546 * 120.17508 * 359.45455 * 15 14 13
17 17 F 1.35105 * 119.92280 * 180.27264 * 16 15 14
18 18 C 1.38338 * 120.15315 * 0.29538 * 16 15 14
19 19 C 1.38739 * 119.97474 * 359.97398 * 18 16 15
20 20 O 1.35782 * 120.08543 * 179.97438 * 19 18 16
21 21 C 1.34805 * 117.00167 * 354.37913 * 20 19 18
22 22 H 1.07994 * 120.00082 * 354.62468 * 21 20 19
23 23 C 1.38634 * 119.99853 * 174.62507 * 21 20 19
24 24 N 1.31570 * 120.00351 * 359.97438 * 23 21 20
25 25 Si 1.86806 * 119.99632 * 180.02562 * 23 21 20
26 26 H 1.48492 * 109.47292 * 90.00034 * 25 23 21
27 27 H 1.48502 * 109.46901 * 210.00112 * 25 23 21
28 28 H 1.48494 * 109.47211 * 329.99558 * 25 23 21
29 29 H 1.08996 * 109.47580 * 179.97438 * 1 2 3
30 30 H 1.09007 * 109.47170 * 299.99894 * 1 2 3
31 31 H 1.08998 * 109.47144 * 59.99368 * 1 2 3
32 32 H 0.96702 * 114.00397 * 59.99701 * 4 2 1
33 33 H 1.09005 * 109.47105 * 55.00310 * 5 2 1
34 34 H 1.08994 * 109.47557 * 294.99985 * 5 2 1
35 35 H 1.08998 * 109.47070 * 179.97438 * 8 6 5
36 36 H 1.08992 * 109.46728 * 300.00480 * 8 6 5
37 37 H 1.09001 * 109.47014 * 60.00329 * 8 6 5
38 38 H 0.96996 * 120.00105 * 334.99887 * 9 6 5
39 39 H 0.97004 * 119.99974 * 3.92225 * 12 10 9
40 40 H 1.08001 * 119.98571 * 359.97438 * 14 13 12
41 41 H 1.08003 * 119.91206 * 179.71986 * 15 14 13
42 42 H 1.07995 * 120.01420 * 179.97438 * 18 16 15
43 43 H 0.97001 * 120.00049 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.0399 -0.7212 -1.2493
6 6 3.5647 -0.6133 -1.3138
7 1 3.9953 -0.9923 -0.3869
8 6 4.0851 -1.4382 -2.4926
9 7 3.9479 0.7894 -1.4925
10 6 5.1612 1.2135 -1.0867
11 8 5.9379 0.4318 -0.5728
12 7 5.5139 2.5038 -1.2516
13 6 6.8041 2.9272 -0.9056
14 6 7.5294 2.2346 0.0525
15 6 8.7997 2.6562 0.3966
16 6 9.3571 3.7638 -0.2215
17 9 10.6015 4.1682 0.1149
18 6 8.6421 4.4569 -1.1817
19 6 7.3641 4.0425 -1.5280
20 8 6.6602 4.7215 -2.4698
21 6 7.2112 5.8557 -2.9464
22 1 8.1277 6.2326 -2.5171
23 6 6.6014 6.5383 -3.9876
24 7 5.4852 6.0789 -4.5110
25 14 7.3655 8.1097 -4.6483
26 1 8.3076 7.7781 -5.7471
27 1 6.2959 9.0007 -5.1654
28 1 8.1000 8.7996 -3.5577
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 1.7209 -1.5953 1.2328
33 1 1.6053 -0.2616 -2.1371
34 1 1.7516 -1.7715 -1.2058
35 1 5.1713 -1.3609 -2.5388
36 1 3.7999 -2.4818 -2.3597
37 1 3.6545 -1.0592 -3.4195
38 1 3.3285 1.4129 -1.9028
39 1 4.8746 3.1394 -1.6097
40 1 7.0995 1.3681 0.5330
41 1 9.3612 2.1182 1.1461
42 1 9.0786 5.3203 -1.6618
43 1 5.0583 6.5568 -5.2392
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000783066050.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:53:17
Heat of formation + Delta-G solvation = -154.754775 kcal
Electronic energy + Delta-G solvation = -27833.104693 eV
Core-core repulsion = 23599.675983 eV
Total energy + Delta-G solvation = -4233.428710 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 326.147 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-49.80820 -41.81186 -40.52802 -39.09265 -38.03905 -36.46551 -35.55087 -34.29801
-32.86236 -31.55569 -30.99140 -29.50841 -27.70763 -27.37097 -24.39892 -23.54496
-22.80591 -22.20065 -21.65585 -20.15373 -19.77927 -19.19275 -18.34886 -17.35785
-17.07229 -16.95555 -16.77539 -16.57166 -16.43057 -16.08609 -15.95511 -15.47132
-15.34843 -15.28639 -15.20347 -14.82487 -14.23865 -14.00985 -13.86508 -13.66517
-13.44843 -13.32719 -13.05404 -13.00827 -12.70444 -12.58087 -12.54131 -12.33685
-12.13304 -11.91349 -11.67568 -11.62367 -11.32388 -10.91710 -10.85679 -10.81517
-10.10525 -9.53061 -8.67381 -8.50567 -6.16088 0.24058 0.47593 1.37579
1.44258 1.52461 1.62870 2.07320 2.14742 2.71541 3.04805 3.15081
3.22793 3.46960 3.48140 3.78947 3.92560 3.97178 4.16673 4.17241
4.36943 4.38726 4.47835 4.51773 4.61366 4.71564 4.77565 4.89826
4.95442 4.98834 5.02497 5.13662 5.23083 5.23959 5.28978 5.32416
5.35258 5.38460 5.56841 5.65226 5.93183 5.97537 6.10536 6.94280
6.95317 6.97205 7.48920 7.64143 8.70129
Molecular weight = 326.15amu
Principal moments of inertia in cm(-1)
A = 0.010925 B = 0.003533 C = 0.002878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2562.366265 B = 7922.275654 C = 9727.835479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.098 3.902
3 H 0.077 0.923
4 O -0.583 6.583
5 C -0.147 4.147
6 C 0.161 3.839
7 H 0.074 0.926
8 C -0.161 4.161
9 N -0.725 5.725
10 C 0.702 3.298
11 O -0.608 6.608
12 N -0.666 5.666
13 C 0.084 3.916
14 C -0.069 4.069
15 C -0.201 4.201
16 C 0.116 3.884
17 F -0.145 7.145
18 C -0.261 4.261
19 C 0.127 3.873
20 O -0.203 6.203
21 C -0.415 4.415
22 H 0.098 0.902
23 C -0.008 4.008
24 N -0.905 5.905
25 Si 1.010 2.990
26 H -0.267 1.267
27 H -0.269 1.269
28 H -0.258 1.258
29 H 0.075 0.925
30 H 0.053 0.947
31 H 0.074 0.926
32 H 0.387 0.613
33 H 0.094 0.906
34 H 0.109 0.891
35 H 0.030 0.970
36 H 0.088 0.912
37 H 0.063 0.937
38 H 0.406 0.594
39 H 0.413 0.587
40 H 0.164 0.836
41 H 0.156 0.844
42 H 0.136 0.864
43 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.822 -12.321 5.225 16.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.039 3.961
3 H 0.095 0.905
4 O -0.391 6.391
5 C -0.185 4.185
6 C 0.057 3.943
7 H 0.092 0.908
8 C -0.219 4.219
9 N -0.380 5.380
10 C 0.403 3.597
11 O -0.489 6.489
12 N -0.312 5.312
13 C -0.012 4.012
14 C -0.090 4.090
15 C -0.221 4.221
16 C 0.096 3.904
17 F -0.124 7.124
18 C -0.282 4.282
19 C 0.073 3.927
20 O -0.109 6.109
21 C -0.491 4.491
22 H 0.115 0.885
23 C -0.207 4.207
24 N -0.542 5.542
25 Si 0.831 3.169
26 H -0.192 1.192
27 H -0.193 1.193
28 H -0.181 1.181
29 H 0.094 0.906
30 H 0.072 0.928
31 H 0.093 0.907
32 H 0.237 0.763
33 H 0.112 0.888
34 H 0.127 0.873
35 H 0.050 0.950
36 H 0.106 0.894
37 H 0.082 0.918
38 H 0.242 0.758
39 H 0.249 0.751
40 H 0.181 0.819
41 H 0.173 0.827
42 H 0.154 0.846
43 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -9.277 -12.471 5.503 16.488
hybrid contribution -0.033 1.141 -0.980 1.504
sum -9.310 -11.330 4.523 15.346
Atomic orbital electron populations
1.22444 0.94812 1.03554 1.02847 1.21928 0.93742 0.96134 0.84328
0.90497 1.86632 1.77669 1.30266 1.44528 1.22597 0.92451 1.03941
0.99530 1.20902 0.95704 0.78744 0.98959 0.90801 1.22183 1.00366
1.01042 0.98346 1.45195 1.14927 1.12556 1.65335 1.16026 0.83203
0.81250 0.79183 1.90754 1.52250 1.54932 1.50985 1.42264 1.12812
1.09229 1.66874 1.16985 0.87222 0.97005 0.99984 1.21260 0.93721
0.99642 0.94350 1.20915 0.97354 0.98438 1.05396 1.17460 0.80101
0.95764 0.97085 1.91422 1.39184 1.90386 1.91431 1.20900 0.96143
1.06062 1.05085 1.19049 0.90408 0.92667 0.90558 1.83898 1.43435
1.35441 1.48097 1.21725 1.10699 0.98599 1.18097 0.88485 1.26350
0.96372 1.02735 0.95285 1.70114 1.18089 1.40939 1.25041 0.84687
0.77928 0.75524 0.78804 1.19199 1.19322 1.18136 0.90610 0.92764
0.90674 0.76322 0.88789 0.87288 0.95047 0.89353 0.91781 0.75802
0.75057 0.81908 0.82671 0.84598 0.91636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.99 9.53 71.98 0.69 -1.30 16
2 C 0.10 1.51 3.53 30.60 0.11 1.62 16
3 H 0.08 1.53 7.62 -2.39 -0.02 1.51 16
4 O -0.58 -10.92 12.79 -148.98 -1.91 -12.82 16
5 C -0.15 -1.84 4.43 30.59 0.14 -1.70 16
6 C 0.16 3.36 2.53 44.99 0.11 3.47 16
7 H 0.07 1.92 7.13 -2.39 -0.02 1.90 16
8 C -0.16 -3.24 9.48 71.98 0.68 -2.56 16
9 N -0.72 -18.60 4.45 -457.80 -2.04 -20.64 16
10 C 0.70 24.73 8.42 179.05 1.51 26.23 16
11 O -0.61 -24.40 12.93 -4.02 -0.05 -24.45 16
12 N -0.67 -25.53 5.29 -316.69 -1.67 -27.20 16
13 C 0.08 3.63 6.48 38.22 0.25 3.88 16
14 C -0.07 -2.73 8.79 22.37 0.20 -2.53 16
15 C -0.20 -7.39 10.02 22.33 0.22 -7.16 16
16 C 0.12 4.65 7.29 22.37 0.16 4.82 16
17 F -0.15 -5.49 17.26 44.97 0.78 -4.72 16
18 C -0.26 -11.77 9.11 22.41 0.20 -11.57 16
19 C 0.13 6.09 6.66 22.68 0.15 6.24 16
20 O -0.20 -11.08 9.18 -22.84 -0.21 -11.29 16
21 C -0.42 -22.67 9.44 67.91 0.64 -22.03 16
22 H 0.10 5.00 5.29 -2.91 -0.02 4.99 16
23 C -0.01 -0.41 5.49 84.83 0.47 0.05 16
24 N -0.91 -50.66 13.67 21.61 0.30 -50.37 16
25 Si 1.01 40.78 29.55 68.60 2.03 42.81 16
26 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16
27 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16
28 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16
29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16
31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
32 H 0.39 3.82 9.05 -74.06 -0.67 3.15 16
33 H 0.09 0.95 8.14 -2.38 -0.02 0.94 16
34 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16
35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
38 H 0.41 8.71 8.62 -92.71 -0.80 7.91 16
39 H 0.41 15.40 8.38 -92.71 -0.78 14.62 16
40 H 0.16 6.37 5.52 -2.91 -0.02 6.35 16
41 H 0.16 4.67 8.06 -2.91 -0.02 4.64 16
42 H 0.14 6.19 5.71 -2.91 -0.02 6.17 16
43 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16
Total: -1.00 -69.79 366.48 1.59 -68.20
By element:
Atomic # 1 Polarization: 44.19 SS G_CDS: -1.16 Total: 43.03 kcal
Atomic # 6 Polarization: -8.08 SS G_CDS: 5.53 Total: -2.56 kcal
Atomic # 7 Polarization: -94.79 SS G_CDS: -3.42 Total: -98.21 kcal
Atomic # 8 Polarization: -46.40 SS G_CDS: -2.17 Total: -48.56 kcal
Atomic # 9 Polarization: -5.49 SS G_CDS: 0.78 Total: -4.72 kcal
Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal
Total: -69.79 1.59 -68.20 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000783066050.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -86.550 kcal
(2) G-P(sol) polarization free energy of solvation -69.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.755 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds