Wall clock time and date at job start Tue Mar 31 2020 14:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47397 * 2 1 4 4 C 1.53002 * 109.46905 * 120.00127 * 2 1 3 5 5 C 1.50696 * 109.46902 * 185.00053 * 4 2 1 6 6 C 1.38385 * 120.00176 * 124.97997 * 5 4 2 7 7 N 1.32133 * 119.99943 * 180.02562 * 6 5 4 8 8 C 1.32147 * 119.99661 * 359.97438 * 7 6 5 9 9 C 1.38342 * 120.00623 * 0.02562 * 8 7 6 10 10 N 1.32124 * 120.00280 * 305.00101 * 5 4 2 11 11 O 1.45197 * 109.46891 * 239.99805 * 2 1 3 12 12 C 1.34230 * 116.99710 * 90.00439 * 11 2 1 13 13 O 1.20824 * 120.00407 * 359.97438 * 12 11 2 14 14 C 1.50700 * 119.99838 * 179.97438 * 12 11 2 15 15 C 1.50700 * 109.47049 * 180.02562 * 14 12 11 16 16 C 1.37646 * 120.12837 * 264.99621 * 15 14 12 17 17 C 1.38607 * 120.25218 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.50186 * 0.02562 * 17 16 15 19 19 C 1.37600 * 120.24504 * 0.02657 * 18 17 16 20 20 C 1.40695 * 120.13316 * 84.72352 * 15 14 12 21 21 C 1.41400 * 120.24085 * 359.97438 * 20 15 14 22 22 H 1.07994 * 120.00085 * 333.91463 * 21 20 15 23 23 C 1.39948 * 120.00151 * 153.91273 * 21 20 15 24 24 N 1.30825 * 120.00037 * 343.67680 * 23 21 20 25 25 Si 1.86796 * 119.99875 * 163.67037 * 23 21 20 26 26 H 1.48498 * 109.47122 * 90.00285 * 25 23 21 27 27 H 1.48504 * 109.46951 * 210.00578 * 25 23 21 28 28 H 1.48495 * 109.47423 * 330.00292 * 25 23 21 29 29 H 1.08999 * 109.47060 * 59.99806 * 1 2 3 30 30 H 1.08993 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46946 * 300.00147 * 1 2 3 32 32 H 1.09001 * 109.47249 * 65.00114 * 4 2 1 33 33 H 1.08997 * 109.46938 * 304.99636 * 4 2 1 34 34 H 1.08000 * 120.00270 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99580 * 179.97438 * 8 7 6 36 36 H 1.07998 * 120.00062 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47249 * 299.99160 * 14 12 11 38 38 H 1.08992 * 109.47400 * 59.99937 * 14 12 11 39 39 H 1.07999 * 119.87169 * 0.02562 * 16 15 14 40 40 H 1.08000 * 119.75071 * 180.02562 * 17 16 15 41 41 H 1.07997 * 119.87590 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.12220 * 179.97438 * 19 18 17 43 43 H 0.96999 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 6 4.1516 -0.0939 2.4405 7 7 5.4685 -0.0002 2.4959 8 6 6.2031 -0.4045 1.4746 9 6 5.5936 -0.9254 0.3472 10 7 4.2766 -1.0188 0.2915 11 8 2.0140 -0.6845 -1.1855 12 6 2.2172 0.0640 -2.2811 13 8 1.9975 1.2517 -2.2506 14 6 2.7193 -0.5770 -3.5491 15 6 2.8623 0.4732 -4.6204 16 6 1.8431 0.6847 -5.5210 17 6 1.9716 1.6503 -6.5070 18 6 3.1259 2.4132 -6.5988 19 6 4.1580 2.2182 -5.7099 20 6 4.0357 1.2453 -4.7004 21 6 5.0868 1.0412 -3.7769 22 1 4.8746 0.6385 -2.7976 23 6 6.4022 1.3611 -4.1319 24 7 6.7152 1.5402 -5.3894 25 14 7.7109 1.5324 -2.8101 26 1 8.3569 0.2154 -2.5794 27 1 8.7336 2.5150 -3.2505 28 1 7.0828 2.0032 -1.5496 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -1.7716 1.2056 33 1 1.6054 -0.2617 2.1369 34 1 3.5512 0.2369 3.2750 35 1 7.2794 -0.3276 1.5197 36 1 6.1941 -1.2554 -0.4876 37 1 3.6885 -1.0399 -3.3631 38 1 2.0105 -1.3372 -3.8773 39 1 0.9394 0.0966 -5.4585 40 1 1.1667 1.8098 -7.2091 41 1 3.2155 3.1625 -7.3713 42 1 5.0563 2.8132 -5.7834 43 1 7.6268 1.7623 -5.6355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893405281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:27 Heat of formation + Delta-G solvation = -28.332757 kcal Electronic energy + Delta-G solvation = -27779.429197 eV Core-core repulsion = 23982.251782 eV Total energy + Delta-G solvation = -3797.177415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08392 -39.83340 -37.69182 -36.25164 -34.45225 -33.64729 -33.47703 -31.81665 -31.13228 -29.47853 -27.47121 -27.04729 -25.09708 -24.61129 -23.33062 -21.90265 -20.94596 -20.39485 -19.29691 -17.56460 -17.19814 -17.05550 -16.97990 -16.18814 -15.83999 -15.30312 -15.22002 -14.68380 -14.50304 -14.05529 -13.72562 -13.66254 -13.29749 -13.12958 -12.77995 -12.60411 -12.43744 -12.08964 -11.91196 -11.75772 -11.58782 -11.46592 -11.22892 -11.17596 -11.04819 -10.98712 -10.79152 -10.73254 -10.42794 -10.16757 -9.59731 -9.50365 -9.39226 -9.21746 -9.17846 -8.96384 -7.34564 -7.32158 -6.76319 -4.36569 0.76468 1.18520 2.71410 2.87476 3.02168 3.06054 3.10316 3.23723 3.44655 3.71899 3.89801 4.01166 4.25225 4.39428 4.64094 4.65907 4.86302 5.07242 5.09059 5.23722 5.33755 5.42962 5.43817 5.55114 5.59635 5.72763 5.86009 5.92595 6.03898 6.11275 6.23239 6.29054 6.36541 6.46934 6.50558 6.77990 7.06780 7.13641 7.27994 7.30012 7.39984 7.63117 7.83117 7.89989 8.04669 8.11139 8.29157 8.60277 8.66041 8.89115 8.98927 10.17971 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.005650 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.838512 B = 4954.248127 C = 7263.695962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.080 0.920 4 C -0.063 4.063 5 C 0.079 3.921 6 C 0.045 3.955 7 N -0.440 5.440 8 C 0.039 3.961 9 C 0.061 3.939 10 N -0.408 5.408 11 O -0.341 6.341 12 C 0.463 3.537 13 O -0.501 6.501 14 C -0.041 4.041 15 C -0.191 4.191 16 C -0.078 4.078 17 C -0.240 4.240 18 C -0.105 4.105 19 C -0.159 4.159 20 C 0.130 3.870 21 C -0.454 4.454 22 H 0.074 0.926 23 C 0.078 3.922 24 N -0.793 5.793 25 Si 0.895 3.105 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.262 1.262 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 -5.935 12.699 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 H 0.098 0.902 4 C -0.101 4.101 5 C -0.062 4.062 6 C -0.115 4.115 7 N -0.154 5.154 8 C -0.121 4.121 9 C -0.099 4.099 10 N -0.123 5.123 11 O -0.259 6.259 12 C 0.306 3.694 13 O -0.387 6.387 14 C -0.078 4.078 15 C -0.193 4.193 16 C -0.096 4.096 17 C -0.259 4.259 18 C -0.124 4.124 19 C -0.178 4.178 20 C 0.128 3.872 21 C -0.484 4.484 22 H 0.092 0.908 23 C -0.139 4.139 24 N -0.418 5.418 25 Si 0.720 3.280 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.186 1.186 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.204 -5.515 12.589 14.372 hybrid contribution 0.778 0.370 0.486 0.989 sum -3.426 -5.145 13.075 14.463 Atomic orbital electron populations 1.22182 0.94335 1.02843 1.03087 1.22363 0.93836 0.97168 0.83227 0.90171 1.20703 0.88287 1.03469 0.97630 1.22213 0.97739 0.95418 0.90841 1.23566 0.91775 0.97659 0.98517 1.68407 1.06459 1.12427 1.28105 1.23749 1.01703 0.95995 0.90633 1.23928 0.91728 0.95721 0.98533 1.68435 1.05977 1.11782 1.26094 1.86666 1.77289 1.42103 1.19813 1.24330 0.73771 0.86355 0.84946 1.90614 1.47341 1.16815 1.83917 1.19941 1.02543 0.97590 0.87726 1.19092 0.98348 1.02152 0.99670 1.20322 0.96135 0.97496 0.95683 1.20307 0.98847 1.03618 1.03114 1.20695 0.94435 0.98698 0.98552 1.21298 0.98356 1.00167 0.97987 1.17341 0.90579 0.88222 0.91067 1.19473 0.90843 1.37668 1.00406 0.90775 1.25859 0.99891 0.92553 0.95631 1.69814 1.20674 1.34230 1.17124 0.86505 0.80185 0.79159 0.82197 1.19100 1.19984 1.18580 0.91594 0.91574 0.91132 0.88416 0.88153 0.81731 0.81561 0.81206 0.87521 0.89705 0.89615 0.89569 0.89514 0.86495 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.55 37.16 0.35 -1.54 16 2 C 0.09 1.26 2.54 -26.73 -0.07 1.20 16 3 H 0.08 1.32 7.16 -51.93 -0.37 0.95 16 4 C -0.06 -0.66 5.37 -27.88 -0.15 -0.81 16 5 C 0.08 1.04 6.18 -82.41 -0.51 0.53 16 6 C 0.04 0.54 10.85 -17.37 -0.19 0.35 16 7 N -0.44 -5.99 10.50 -13.06 -0.14 -6.13 16 8 C 0.04 0.50 11.22 -17.38 -0.20 0.31 16 9 C 0.06 0.87 11.22 -17.37 -0.20 0.68 16 10 N -0.41 -6.40 9.11 -9.29 -0.08 -6.48 16 11 O -0.34 -5.90 8.61 -39.26 -0.34 -6.24 16 12 C 0.46 9.54 7.54 36.01 0.27 9.81 16 13 O -0.50 -11.94 15.25 -18.75 -0.29 -12.23 16 14 C -0.04 -0.84 5.29 -29.03 -0.15 -0.99 16 15 C -0.19 -4.63 4.43 -103.91 -0.46 -5.09 16 16 C -0.08 -1.80 9.66 -39.66 -0.38 -2.19 16 17 C -0.24 -5.56 10.05 -39.29 -0.39 -5.95 16 18 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 19 C -0.16 -4.23 8.69 -38.87 -0.34 -4.57 16 20 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 21 C -0.45 -11.91 8.14 -37.74 -0.31 -12.21 16 22 H 0.07 1.92 6.67 -52.49 -0.35 1.57 16 23 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 24 N -0.79 -20.30 10.96 55.55 0.61 -19.69 16 25 Si 0.90 18.42 29.59 -169.99 -5.03 13.39 16 26 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.69 7.89 -51.93 -0.41 0.28 16 34 H 0.17 1.38 7.95 -52.49 -0.42 0.96 16 35 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.11 2.21 7.08 -51.93 -0.37 1.84 16 38 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 3.20 6.21 -52.49 -0.33 2.87 16 43 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -32.13 368.98 -9.10 -41.23 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.60 Total: 9.28 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.80 Total: -18.70 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.39 Total: -32.30 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.62 Total: -18.46 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.13 -9.10 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893405281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.897 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds