Wall clock time and date at job start Tue Mar 31 2020 14:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47397 * 2 1 4 4 C 1.53002 * 109.46905 * 120.00127 * 2 1 3 5 5 C 1.50696 * 109.46902 * 185.00053 * 4 2 1 6 6 C 1.38385 * 120.00176 * 124.97997 * 5 4 2 7 7 N 1.32133 * 119.99943 * 180.02562 * 6 5 4 8 8 C 1.32147 * 119.99661 * 359.97438 * 7 6 5 9 9 C 1.38342 * 120.00623 * 0.02562 * 8 7 6 10 10 N 1.32124 * 120.00280 * 305.00101 * 5 4 2 11 11 O 1.45197 * 109.46891 * 239.99805 * 2 1 3 12 12 C 1.34230 * 116.99710 * 90.00439 * 11 2 1 13 13 O 1.20824 * 120.00407 * 359.97438 * 12 11 2 14 14 C 1.50700 * 119.99838 * 179.97438 * 12 11 2 15 15 C 1.50700 * 109.47049 * 180.02562 * 14 12 11 16 16 C 1.37646 * 120.12837 * 264.99621 * 15 14 12 17 17 C 1.38607 * 120.25218 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.50186 * 0.02562 * 17 16 15 19 19 C 1.37600 * 120.24504 * 0.02657 * 18 17 16 20 20 C 1.40695 * 120.13316 * 84.72352 * 15 14 12 21 21 C 1.41400 * 120.24085 * 359.97438 * 20 15 14 22 22 H 1.07994 * 120.00085 * 333.91463 * 21 20 15 23 23 C 1.39948 * 120.00151 * 153.91273 * 21 20 15 24 24 N 1.30825 * 120.00037 * 343.67680 * 23 21 20 25 25 Si 1.86796 * 119.99875 * 163.67037 * 23 21 20 26 26 H 1.48498 * 109.47122 * 90.00285 * 25 23 21 27 27 H 1.48504 * 109.46951 * 210.00578 * 25 23 21 28 28 H 1.48495 * 109.47423 * 330.00292 * 25 23 21 29 29 H 1.08999 * 109.47060 * 59.99806 * 1 2 3 30 30 H 1.08993 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46946 * 300.00147 * 1 2 3 32 32 H 1.09001 * 109.47249 * 65.00114 * 4 2 1 33 33 H 1.08997 * 109.46938 * 304.99636 * 4 2 1 34 34 H 1.08000 * 120.00270 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99580 * 179.97438 * 8 7 6 36 36 H 1.07998 * 120.00062 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47249 * 299.99160 * 14 12 11 38 38 H 1.08992 * 109.47400 * 59.99937 * 14 12 11 39 39 H 1.07999 * 119.87169 * 0.02562 * 16 15 14 40 40 H 1.08000 * 119.75071 * 180.02562 * 17 16 15 41 41 H 1.07997 * 119.87590 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.12220 * 179.97438 * 19 18 17 43 43 H 0.96999 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 6 4.1516 -0.0939 2.4405 7 7 5.4685 -0.0002 2.4959 8 6 6.2031 -0.4045 1.4746 9 6 5.5936 -0.9254 0.3472 10 7 4.2766 -1.0188 0.2915 11 8 2.0140 -0.6845 -1.1855 12 6 2.2172 0.0640 -2.2811 13 8 1.9975 1.2517 -2.2506 14 6 2.7193 -0.5770 -3.5491 15 6 2.8623 0.4732 -4.6204 16 6 1.8431 0.6847 -5.5210 17 6 1.9716 1.6503 -6.5070 18 6 3.1259 2.4132 -6.5988 19 6 4.1580 2.2182 -5.7099 20 6 4.0357 1.2453 -4.7004 21 6 5.0868 1.0412 -3.7769 22 1 4.8746 0.6385 -2.7976 23 6 6.4022 1.3611 -4.1319 24 7 6.7152 1.5402 -5.3894 25 14 7.7109 1.5324 -2.8101 26 1 8.3569 0.2154 -2.5794 27 1 8.7336 2.5150 -3.2505 28 1 7.0828 2.0032 -1.5496 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -1.7716 1.2056 33 1 1.6054 -0.2617 2.1369 34 1 3.5512 0.2369 3.2750 35 1 7.2794 -0.3276 1.5197 36 1 6.1941 -1.2554 -0.4876 37 1 3.6885 -1.0399 -3.3631 38 1 2.0105 -1.3372 -3.8773 39 1 0.9394 0.0966 -5.4585 40 1 1.1667 1.8098 -7.2091 41 1 3.2155 3.1625 -7.3713 42 1 5.0563 2.8132 -5.7834 43 1 7.6268 1.7623 -5.6355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893405281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:26 Heat of formation + Delta-G solvation = -45.821570 kcal Electronic energy + Delta-G solvation = -27780.187569 eV Core-core repulsion = 23982.251782 eV Total energy + Delta-G solvation = -3797.935787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08700 -41.33514 -39.46528 -37.70424 -35.55565 -35.53802 -34.55540 -33.52030 -32.20509 -31.38358 -28.80916 -28.37611 -26.98048 -25.62632 -24.40123 -23.23931 -22.83873 -21.73433 -21.00390 -19.10596 -18.72038 -18.41639 -17.93327 -17.46622 -17.26156 -16.93778 -16.59753 -16.25708 -15.78598 -15.48077 -15.40994 -15.02605 -14.49559 -14.42216 -14.23732 -13.87734 -13.59209 -13.41853 -13.35684 -13.13127 -12.93086 -12.91031 -12.80316 -12.73852 -12.53201 -12.49560 -12.22288 -12.18150 -11.86895 -11.51582 -11.36734 -11.26931 -11.21365 -11.04305 -10.17607 -9.96687 -9.26150 -9.22952 -8.63254 -6.33067 -0.20005 0.17840 0.92184 1.07689 1.30480 1.41963 1.48675 1.50182 2.02848 2.16246 2.71799 2.75574 3.11940 3.35804 3.45165 3.72427 3.75814 3.89619 4.05348 4.09884 4.16281 4.27737 4.35398 4.37350 4.48743 4.55071 4.56420 4.67765 4.74141 4.77464 4.77939 4.91386 4.95680 5.05501 5.16263 5.21700 5.33564 5.42697 5.50584 5.65216 5.75330 6.00415 6.13038 6.18422 6.32985 6.38293 6.69479 6.84617 6.95297 7.05999 7.08903 8.33288 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.005650 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.838512 B = 4954.248127 C = 7263.695962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 H 0.050 0.950 4 C -0.054 4.054 5 C 0.063 3.937 6 C 0.051 3.949 7 N -0.458 5.458 8 C 0.036 3.964 9 C 0.037 3.963 10 N -0.444 5.444 11 O -0.337 6.337 12 C 0.472 3.528 13 O -0.542 6.542 14 C -0.041 4.041 15 C -0.199 4.199 16 C -0.087 4.087 17 C -0.241 4.241 18 C -0.114 4.114 19 C -0.192 4.192 20 C 0.098 3.902 21 C -0.479 4.479 22 H 0.066 0.934 23 C 0.039 3.961 24 N -0.823 5.823 25 Si 0.960 3.040 26 H -0.241 1.241 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.205 0.795 35 H 0.191 0.809 36 H 0.173 0.827 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 -6.919 14.736 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.068 0.932 4 C -0.092 4.092 5 C -0.078 4.078 6 C -0.109 4.109 7 N -0.173 5.173 8 C -0.123 4.123 9 C -0.122 4.122 10 N -0.159 5.159 11 O -0.254 6.254 12 C 0.317 3.683 13 O -0.431 6.431 14 C -0.078 4.078 15 C -0.200 4.200 16 C -0.105 4.105 17 C -0.260 4.260 18 C -0.132 4.132 19 C -0.212 4.212 20 C 0.096 3.904 21 C -0.509 4.509 22 H 0.084 0.916 23 C -0.176 4.176 24 N -0.449 5.449 25 Si 0.780 3.220 26 H -0.164 1.164 27 H -0.193 1.193 28 H -0.196 1.196 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.165 0.835 34 H 0.221 0.779 35 H 0.208 0.792 36 H 0.190 0.810 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.434 -6.536 14.620 16.912 hybrid contribution 1.034 0.664 -0.131 1.236 sum -4.400 -5.872 14.489 16.241 Atomic orbital electron populations 1.22165 0.91949 1.04159 1.03433 1.22761 0.95755 0.95899 0.83032 0.93221 1.20879 0.86650 1.04350 0.97309 1.22713 0.98950 0.95376 0.90780 1.24184 0.91613 0.96010 0.99126 1.68486 1.07377 1.13050 1.28348 1.24101 1.02931 0.95179 0.90041 1.24094 0.91793 0.96915 0.99421 1.68375 1.06843 1.13012 1.27699 1.86627 1.76891 1.41802 1.20066 1.24105 0.72893 0.85679 0.85666 1.90595 1.49394 1.18421 1.84722 1.19929 1.03197 0.97282 0.87411 1.19490 0.97782 1.02173 1.00582 1.20752 0.96941 0.97700 0.95066 1.20721 0.99041 1.02824 1.03418 1.20983 0.94350 0.99353 0.98513 1.21298 0.98827 1.01195 0.99840 1.17722 0.92004 0.89038 0.91629 1.19556 0.91870 1.39282 1.00152 0.91605 1.26628 1.01580 0.91718 0.97679 1.69871 1.21540 1.34723 1.18769 0.85535 0.77447 0.80307 0.78676 1.16417 1.19312 1.19551 0.94260 0.89693 0.87801 0.87020 0.83510 0.77862 0.79181 0.80988 0.88226 0.86408 0.86368 0.86407 0.87453 0.88430 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.55 71.98 0.69 -2.55 16 2 C 0.08 2.15 2.54 30.60 0.08 2.23 16 3 H 0.05 1.64 7.16 -2.39 -0.02 1.62 16 4 C -0.05 -0.98 5.37 29.85 0.16 -0.82 16 5 C 0.06 1.56 6.18 42.55 0.26 1.82 16 6 C 0.05 1.10 10.85 84.68 0.92 2.02 16 7 N -0.46 -11.74 10.50 -195.23 -2.05 -13.79 16 8 C 0.04 0.90 11.22 84.67 0.95 1.86 16 9 C 0.04 1.06 11.22 84.67 0.95 2.01 16 10 N -0.44 -13.83 9.11 -183.30 -1.67 -15.50 16 11 O -0.34 -11.49 8.61 -51.41 -0.44 -11.94 16 12 C 0.47 19.65 7.54 71.24 0.54 20.18 16 13 O -0.54 -26.54 15.25 21.97 0.34 -26.21 16 14 C -0.04 -1.70 5.29 29.10 0.15 -1.54 16 15 C -0.20 -9.76 4.43 -19.40 -0.09 -9.85 16 16 C -0.09 -3.92 9.66 22.22 0.21 -3.70 16 17 C -0.24 -10.92 10.05 22.46 0.23 -10.69 16 18 C -0.11 -5.59 10.02 22.22 0.22 -5.36 16 19 C -0.19 -10.66 8.69 22.73 0.20 -10.46 16 20 C 0.10 5.45 5.56 -21.29 -0.12 5.33 16 21 C -0.48 -26.21 8.14 23.46 0.19 -26.02 16 22 H 0.07 3.59 6.67 -2.91 -0.02 3.57 16 23 C 0.04 1.99 5.16 85.26 0.44 2.43 16 24 N -0.82 -43.66 10.96 21.83 0.24 -43.42 16 25 Si 0.96 38.61 29.59 68.60 2.03 40.64 16 26 H -0.24 -8.63 7.11 99.48 0.71 -7.93 16 27 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.15 1.28 7.89 -2.39 -0.02 1.26 16 34 H 0.20 2.56 7.95 -2.91 -0.02 2.54 16 35 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.17 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.10 4.26 7.08 -2.39 -0.02 4.24 16 38 H 0.12 3.99 8.05 -2.39 -0.02 3.97 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 40 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.10 5.65 6.21 -2.91 -0.02 5.64 16 43 H 0.29 13.78 8.30 -92.71 -0.77 13.02 16 Total: -1.00 -73.86 368.98 5.45 -68.41 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 1.02 Total: 34.91 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 5.99 Total: -33.11 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -3.48 Total: -72.70 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.11 Total: -38.14 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -73.86 5.45 -68.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893405281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.588 kcal (2) G-P(sol) polarization free energy of solvation -73.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds