Wall clock time and date at job start Tue Mar 31 2020 15:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.47269 * 2 1 4 4 C 1.34228 * 116.99823 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00253 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99816 * 180.02562 * 4 3 2 7 7 N 1.46909 * 109.47199 * 183.78831 * 6 4 3 8 8 C 1.46894 * 111.00186 * 195.79542 * 7 6 4 9 9 C 1.50699 * 109.47224 * 76.10748 * 8 7 6 10 10 H 1.08004 * 119.99588 * 5.37576 * 9 8 7 11 11 C 1.37878 * 120.00371 * 185.37640 * 9 8 7 12 12 N 1.31519 * 119.99673 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47468 * 59.99745 * 13 11 9 15 15 H 1.48500 * 109.47004 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46941 * 299.99542 * 13 11 9 17 17 C 1.46897 * 110.99536 * 71.84062 * 7 6 4 18 18 C 1.50705 * 109.47146 * 190.00137 * 17 7 6 19 19 C 1.38420 * 120.42688 * 260.00535 * 18 17 7 20 20 C 1.38959 * 118.46262 * 179.97438 * 19 18 17 21 21 F 1.35095 * 120.38219 * 179.97438 * 20 19 18 22 22 C 1.38295 * 119.23679 * 359.97438 * 20 19 18 23 23 N 1.31951 * 120.80031 * 0.02562 * 22 20 19 24 24 C 1.32249 * 121.67046 * 359.72183 * 23 22 20 25 25 O 1.35725 * 119.65918 * 180.26893 * 24 23 22 26 26 C 1.42895 * 116.99726 * 0.26694 * 25 24 23 27 27 H 1.09000 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47070 * 299.99762 * 1 2 3 29 29 H 1.08997 * 109.46958 * 59.99864 * 1 2 3 30 30 H 1.09002 * 109.46759 * 239.99880 * 2 1 3 31 31 H 1.09000 * 109.47174 * 120.00858 * 2 1 3 32 32 H 1.09004 * 109.46972 * 63.79133 * 6 4 3 33 33 H 1.09000 * 109.46949 * 303.78852 * 6 4 3 34 34 H 1.08993 * 109.47570 * 196.11029 * 8 7 6 35 35 H 1.08998 * 109.47070 * 316.11152 * 8 7 6 36 36 H 0.96998 * 119.99662 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.47589 * 310.00151 * 17 7 6 38 38 H 1.08998 * 109.47164 * 70.00497 * 17 7 6 39 39 H 1.07994 * 120.77349 * 359.94979 * 19 18 17 40 40 H 1.08005 * 119.60237 * 180.02562 * 22 20 19 41 41 H 1.09005 * 109.47474 * 300.00099 * 26 25 24 42 42 H 1.09004 * 109.47615 * 60.00190 * 26 25 24 43 43 H 1.08998 * 109.47332 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3850 2.8616 -0.0922 8 6 6.0027 4.1422 0.2770 9 6 5.9666 4.3040 1.7748 10 1 5.6084 3.4969 2.3966 11 6 6.3907 5.4825 2.3514 12 7 6.8273 6.4652 1.5941 13 14 6.3465 5.6828 4.2081 14 1 7.2032 4.6464 4.8383 15 1 6.8518 7.0307 4.5727 16 1 4.9499 5.5303 4.6893 17 6 5.8068 2.4414 -1.4352 18 6 7.2829 2.1381 -1.4262 19 6 8.1925 3.0674 -1.9006 20 6 9.5440 2.7453 -1.8727 21 9 10.4651 3.6232 -2.3264 22 6 9.9352 1.5157 -1.3751 23 7 9.0425 0.6518 -0.9303 24 6 7.7486 0.9251 -0.9365 25 8 6.8663 0.0084 -0.4639 26 6 7.4073 -1.2199 0.0266 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 3.6407 3.4460 0.9225 33 1 3.5311 3.4920 -0.8536 34 1 7.0373 4.1587 -0.0654 35 1 5.4524 4.9590 -0.1901 36 1 7.1260 7.2941 1.9998 37 1 5.2541 1.5483 -1.7269 38 1 5.6048 3.2422 -2.1466 39 1 7.8596 4.0206 -2.2838 40 1 10.9841 1.2594 -1.3503 41 1 7.9516 -1.7223 -0.7731 42 1 8.0861 -1.0132 0.8540 43 1 6.5968 -1.8613 0.3727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231741419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:36 Heat of formation + Delta-G solvation = -118.489088 kcal Electronic energy + Delta-G solvation = -28706.420870 eV Core-core repulsion = 24474.564759 eV Total energy + Delta-G solvation = -4231.856112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.58496 -40.42715 -39.94357 -37.43283 -37.00179 -35.72578 -32.94941 -32.31678 -31.63934 -30.25236 -28.13476 -27.37536 -26.83223 -24.63385 -23.11352 -22.80343 -22.24376 -21.06674 -19.88739 -18.05751 -17.46174 -17.22815 -16.87130 -16.44939 -16.24813 -16.01050 -15.69158 -15.11267 -14.85663 -14.52858 -14.39886 -14.26870 -13.99812 -13.54441 -13.41238 -13.05021 -12.90988 -12.70323 -12.58014 -12.45201 -12.07597 -11.96261 -11.71928 -11.49095 -11.40435 -11.26632 -11.11891 -10.76686 -10.73878 -10.64278 -10.28966 -10.02923 -9.85081 -9.51689 -9.37165 -9.29718 -8.46185 -7.95011 -7.41870 -6.06895 -4.08509 1.24939 1.40346 2.76412 2.96795 3.31856 3.36218 3.39770 3.46386 3.86735 4.35602 4.40291 4.50020 4.85659 4.93922 4.97507 5.03372 5.09964 5.18301 5.28432 5.29412 5.37498 5.54113 5.56778 5.61667 5.66136 5.73847 5.75772 5.88734 5.91109 5.93577 6.06661 6.09362 6.14526 6.34792 6.69349 6.78914 7.02818 7.17186 7.59084 7.74250 7.87047 8.00156 8.04456 8.33130 8.42890 8.99321 9.56220 11.03108 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.005768 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3778.981107 B = 4852.804775 C = 7432.517569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.452 3.548 5 O -0.476 6.476 6 C 0.075 3.925 7 N -0.513 5.513 8 C 0.191 3.809 9 C -0.509 4.509 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.104 3.896 18 C -0.102 4.102 19 C -0.063 4.063 20 C 0.004 3.996 21 F -0.136 7.136 22 C 0.108 3.892 23 N -0.524 5.524 24 C 0.336 3.664 25 O -0.265 6.265 26 C 0.043 3.957 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -11.618 -7.732 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.287 6.287 4 C 0.293 3.707 5 O -0.360 6.360 6 C -0.054 4.054 7 N -0.238 5.238 8 C 0.067 3.933 9 C -0.548 4.548 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.024 4.024 18 C -0.106 4.106 19 C -0.089 4.089 20 C -0.018 4.018 21 F -0.115 7.115 22 C -0.050 4.050 23 N -0.248 5.248 24 C 0.156 3.844 25 O -0.170 6.170 26 C -0.053 4.053 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.105 -12.900 -7.044 15.261 hybrid contribution 0.020 1.514 0.263 1.537 sum -4.085 -11.386 -6.781 13.868 Atomic orbital electron populations 1.21787 0.93213 1.02472 1.03372 1.22859 0.94838 0.81193 1.02185 1.86519 1.25752 1.31501 1.84947 1.24177 0.79841 0.93693 0.73022 1.90683 1.59663 1.42502 1.43125 1.21491 0.90045 0.88965 1.04889 1.61729 1.03716 1.35396 1.22990 1.19881 0.94610 0.81989 0.96852 1.21097 1.42846 0.99517 0.91307 0.91857 1.24957 0.95342 0.95742 0.98283 1.69931 1.43346 1.05124 1.35208 0.86585 0.78465 0.77095 0.85444 1.20232 1.21330 1.20192 1.20851 0.90181 1.00032 0.91356 1.19573 0.97397 0.91818 1.01801 1.21418 0.90743 0.99543 0.97191 1.18431 0.86952 0.90500 1.05926 1.91479 1.64983 1.67891 1.87130 1.22308 0.99330 0.88398 0.94923 1.67376 1.01605 1.34720 1.21084 1.19672 0.85914 0.88614 0.90188 1.86564 1.30614 1.25637 1.74151 1.22773 0.99757 0.84002 0.98784 0.90716 0.91556 0.91699 0.91738 0.91567 0.85659 0.91936 0.94548 0.98040 0.92797 0.89794 0.94625 0.83186 0.81874 0.93169 0.92652 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.56 10.22 -39.25 -0.40 -5.96 16 4 C 0.45 7.82 7.52 36.01 0.27 8.10 16 5 O -0.48 -9.13 14.08 -21.63 -0.30 -9.43 16 6 C 0.08 1.37 5.39 -4.97 -0.03 1.34 16 7 N -0.51 -10.68 4.02 -238.96 -0.96 -11.64 16 8 C 0.19 4.66 4.60 -4.98 -0.02 4.64 16 9 C -0.51 -13.85 8.54 -34.44 -0.29 -14.15 16 10 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 13 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.10 1.89 4.41 -4.98 -0.02 1.87 16 18 C -0.10 -1.88 4.68 -104.33 -0.49 -2.37 16 19 C -0.06 -1.08 8.38 -39.25 -0.33 -1.41 16 20 C 0.00 0.06 7.34 -39.29 -0.29 -0.22 16 21 F -0.14 -2.20 17.28 2.25 0.04 -2.16 16 22 C 0.11 1.67 11.16 -17.48 -0.20 1.47 16 23 N -0.52 -9.02 9.21 -13.27 -0.12 -9.14 16 24 C 0.34 6.22 7.47 -17.15 -0.13 6.09 16 25 O -0.27 -4.86 8.98 -22.88 -0.21 -5.06 16 26 C 0.04 0.61 10.38 101.05 1.05 1.66 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.13 2.41 7.36 -51.93 -0.38 2.02 16 33 H 0.06 1.00 8.05 -51.93 -0.42 0.59 16 34 H 0.04 0.95 5.75 -51.93 -0.30 0.65 16 35 H 0.00 0.05 7.99 -51.93 -0.42 -0.37 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 37 H 0.08 1.50 6.20 -51.93 -0.32 1.18 16 38 H 0.04 0.59 8.01 -51.93 -0.42 0.17 16 39 H 0.15 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 41 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -31.55 370.41 -6.64 -38.19 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.02 Total: -0.36 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 0.04 Total: 8.57 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.35 Total: -45.82 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.91 Total: -20.46 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.55 -6.64 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231741419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.299 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds