Wall clock time and date at job start Tue Mar 31 2020 15:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.47269 * 2 1 4 4 C 1.34228 * 116.99823 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00253 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99816 * 180.02562 * 4 3 2 7 7 N 1.46909 * 109.47199 * 183.78831 * 6 4 3 8 8 C 1.46894 * 111.00186 * 195.79542 * 7 6 4 9 9 C 1.50699 * 109.47224 * 76.10748 * 8 7 6 10 10 H 1.08004 * 119.99588 * 5.37576 * 9 8 7 11 11 C 1.37878 * 120.00371 * 185.37640 * 9 8 7 12 12 N 1.31519 * 119.99673 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47468 * 59.99745 * 13 11 9 15 15 H 1.48500 * 109.47004 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46941 * 299.99542 * 13 11 9 17 17 C 1.46897 * 110.99536 * 71.84062 * 7 6 4 18 18 C 1.50705 * 109.47146 * 190.00137 * 17 7 6 19 19 C 1.38420 * 120.42688 * 260.00535 * 18 17 7 20 20 C 1.38959 * 118.46262 * 179.97438 * 19 18 17 21 21 F 1.35095 * 120.38219 * 179.97438 * 20 19 18 22 22 C 1.38295 * 119.23679 * 359.97438 * 20 19 18 23 23 N 1.31951 * 120.80031 * 0.02562 * 22 20 19 24 24 C 1.32249 * 121.67046 * 359.72183 * 23 22 20 25 25 O 1.35725 * 119.65918 * 180.26893 * 24 23 22 26 26 C 1.42895 * 116.99726 * 0.26694 * 25 24 23 27 27 H 1.09000 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47070 * 299.99762 * 1 2 3 29 29 H 1.08997 * 109.46958 * 59.99864 * 1 2 3 30 30 H 1.09002 * 109.46759 * 239.99880 * 2 1 3 31 31 H 1.09000 * 109.47174 * 120.00858 * 2 1 3 32 32 H 1.09004 * 109.46972 * 63.79133 * 6 4 3 33 33 H 1.09000 * 109.46949 * 303.78852 * 6 4 3 34 34 H 1.08993 * 109.47570 * 196.11029 * 8 7 6 35 35 H 1.08998 * 109.47070 * 316.11152 * 8 7 6 36 36 H 0.96998 * 119.99662 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.47589 * 310.00151 * 17 7 6 38 38 H 1.08998 * 109.47164 * 70.00497 * 17 7 6 39 39 H 1.07994 * 120.77349 * 359.94979 * 19 18 17 40 40 H 1.08005 * 119.60237 * 180.02562 * 22 20 19 41 41 H 1.09005 * 109.47474 * 300.00099 * 26 25 24 42 42 H 1.09004 * 109.47615 * 60.00190 * 26 25 24 43 43 H 1.08998 * 109.47332 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3850 2.8616 -0.0922 8 6 6.0027 4.1422 0.2770 9 6 5.9666 4.3040 1.7748 10 1 5.6084 3.4969 2.3966 11 6 6.3907 5.4825 2.3514 12 7 6.8273 6.4652 1.5941 13 14 6.3465 5.6828 4.2081 14 1 7.2032 4.6464 4.8383 15 1 6.8518 7.0307 4.5727 16 1 4.9499 5.5303 4.6893 17 6 5.8068 2.4414 -1.4352 18 6 7.2829 2.1381 -1.4262 19 6 8.1925 3.0674 -1.9006 20 6 9.5440 2.7453 -1.8727 21 9 10.4651 3.6232 -2.3264 22 6 9.9352 1.5157 -1.3751 23 7 9.0425 0.6518 -0.9303 24 6 7.7486 0.9251 -0.9365 25 8 6.8663 0.0084 -0.4639 26 6 7.4073 -1.2199 0.0266 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 3.6407 3.4460 0.9225 33 1 3.5311 3.4920 -0.8536 34 1 7.0373 4.1587 -0.0654 35 1 5.4524 4.9590 -0.1901 36 1 7.1260 7.2941 1.9998 37 1 5.2541 1.5483 -1.7269 38 1 5.6048 3.2422 -2.1466 39 1 7.8596 4.0206 -2.2838 40 1 10.9841 1.2594 -1.3503 41 1 7.9516 -1.7223 -0.7731 42 1 8.0861 -1.0132 0.8540 43 1 6.5968 -1.8613 0.3727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231741419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:35 Heat of formation + Delta-G solvation = -138.970693 kcal Electronic energy + Delta-G solvation = -28707.309019 eV Core-core repulsion = 24474.564759 eV Total energy + Delta-G solvation = -4232.744261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88139 -41.76556 -41.26198 -38.79485 -38.41665 -37.12057 -34.81960 -33.87413 -32.58073 -31.57366 -29.87299 -28.86589 -28.05721 -26.28059 -24.33038 -24.14296 -23.65955 -22.44906 -21.37192 -19.35442 -18.86910 -18.55619 -18.42509 -18.16939 -17.49015 -17.39177 -16.99333 -16.63798 -16.39445 -15.91417 -15.76249 -15.76191 -15.25648 -14.93933 -14.80336 -14.36958 -14.07740 -13.97330 -13.91744 -13.84293 -13.56056 -13.32651 -13.12197 -12.92979 -12.70955 -12.63940 -12.50037 -12.40552 -12.38594 -12.01464 -11.96551 -11.45035 -11.38266 -11.16034 -10.80948 -10.80431 -10.54145 -9.27951 -9.05671 -8.17514 -6.25974 -0.06376 0.05494 1.38590 1.40997 1.42810 1.50341 1.72765 2.19517 2.40627 2.54419 3.05874 3.15097 3.22706 3.38586 3.73329 3.74286 3.93390 4.07698 4.10056 4.17426 4.20451 4.27971 4.42140 4.47228 4.48665 4.51286 4.57526 4.70606 4.77859 4.82109 4.89171 4.95601 4.98082 5.18652 5.20312 5.21934 5.40895 5.57450 5.67613 6.06712 6.18760 6.30881 6.51667 6.68046 6.87697 7.00451 7.42798 8.91413 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.005768 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3778.981107 B = 4852.804775 C = 7432.517569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.461 3.539 5 O -0.496 6.496 6 C 0.073 3.927 7 N -0.525 5.525 8 C 0.209 3.791 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.955 3.045 14 H -0.278 1.278 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.111 3.889 18 C -0.124 4.124 19 C -0.068 4.068 20 C -0.003 4.003 21 F -0.134 7.134 22 C 0.117 3.883 23 N -0.529 5.529 24 C 0.324 3.676 25 O -0.285 6.285 26 C 0.040 3.960 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.019 0.981 35 H -0.016 1.016 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.154 0.846 40 H 0.201 0.799 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -12.631 -7.567 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.287 6.287 4 C 0.302 3.698 5 O -0.382 6.382 6 C -0.056 4.056 7 N -0.251 5.251 8 C 0.084 3.916 9 C -0.559 4.559 10 H 0.071 0.929 11 C -0.186 4.186 12 N -0.566 5.566 13 Si 0.781 3.219 14 H -0.204 1.204 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.017 4.017 18 C -0.128 4.128 19 C -0.094 4.094 20 C -0.025 4.025 21 F -0.113 7.113 22 C -0.041 4.041 23 N -0.252 5.252 24 C 0.144 3.856 25 O -0.190 6.190 26 C -0.055 4.055 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.002 0.998 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.172 0.828 40 H 0.218 0.782 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.591 -13.932 -6.884 16.204 hybrid contribution 0.141 1.747 0.173 1.762 sum -4.450 -12.185 -6.711 14.605 Atomic orbital electron populations 1.21810 0.90501 1.04250 1.03568 1.23211 0.96911 0.79431 1.02265 1.86500 1.24136 1.33659 1.84362 1.23811 0.80543 0.92827 0.72580 1.90675 1.60370 1.42952 1.44239 1.21455 0.88839 0.90154 1.05152 1.61566 1.05193 1.33215 1.25082 1.19481 0.93709 0.83173 0.95256 1.21354 1.42537 0.99276 0.92782 0.92884 1.25690 0.95017 0.95499 1.02439 1.70031 1.44183 1.05530 1.36869 0.85654 0.78823 0.77011 0.80448 1.20359 1.20744 1.19109 1.20814 0.90401 1.00341 0.90150 1.19658 0.97570 0.92403 1.03136 1.21555 0.91302 0.99580 0.96997 1.18516 0.86679 0.91028 1.06258 1.91482 1.64776 1.67920 1.87136 1.22893 1.00684 0.87508 0.92991 1.67456 1.01312 1.35094 1.21366 1.19847 0.86468 0.88839 0.90406 1.86530 1.31479 1.26735 1.74242 1.22959 1.00497 0.83022 0.99005 0.88118 0.91622 0.91221 0.91309 0.91925 0.87022 0.89744 0.96257 0.99776 0.92723 0.89514 0.93295 0.82799 0.78236 0.91697 0.93273 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.06 1.24 6.19 71.98 0.45 1.69 16 3 O -0.37 -10.76 10.22 -51.40 -0.53 -11.28 16 4 C 0.46 15.79 7.52 71.24 0.54 16.33 16 5 O -0.50 -18.92 14.08 24.73 0.35 -18.58 16 6 C 0.07 2.66 5.39 85.56 0.46 3.12 16 7 N -0.53 -22.13 4.02 -909.94 -3.66 -25.79 16 8 C 0.21 10.43 4.60 85.56 0.39 10.83 16 9 C -0.52 -28.75 8.54 25.60 0.22 -28.54 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 11 C 0.01 0.69 5.46 84.65 0.46 1.15 16 12 N -0.93 -53.68 13.29 21.45 0.28 -53.40 16 13 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 C 0.11 4.03 4.41 85.56 0.38 4.41 16 18 C -0.12 -4.58 4.68 -19.67 -0.09 -4.67 16 19 C -0.07 -2.35 8.38 22.49 0.19 -2.17 16 20 C 0.00 -0.09 7.34 22.46 0.16 0.07 16 21 F -0.13 -4.21 17.28 44.97 0.78 -3.43 16 22 C 0.12 3.43 11.16 84.69 0.95 4.37 16 23 N -0.53 -17.63 9.21 -308.75 -2.84 -20.47 16 24 C 0.32 11.89 7.47 84.78 0.63 12.53 16 25 O -0.28 -10.36 8.98 -86.65 -0.78 -11.14 16 26 C 0.04 1.12 10.38 113.37 1.18 2.30 16 27 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.11 4.37 7.36 -2.38 -0.02 4.35 16 33 H 0.08 2.68 8.05 -2.39 -0.02 2.66 16 34 H 0.02 1.03 5.75 -2.39 -0.01 1.02 16 35 H -0.02 -0.81 7.99 -2.39 -0.02 -0.83 16 36 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.09 3.09 6.20 -2.39 -0.01 3.08 16 38 H 0.05 1.62 8.01 -2.39 -0.02 1.60 16 39 H 0.15 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.20 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.06 1.59 8.10 -2.38 -0.02 1.57 16 42 H 0.05 1.41 8.11 -2.39 -0.02 1.39 16 43 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -67.15 370.41 3.30 -63.84 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.02 Total: 14.22 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.65 Total: 19.96 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -6.22 Total: -99.66 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.95 Total: -41.00 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.15 3.30 -63.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231741419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.128 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds