Wall clock time and date at job start Tue Mar 31 2020 14:57:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.46972 * 2 1
4 4 C 1.53001 * 109.47317 * 239.99709 * 2 1 3
5 5 C 1.50694 * 109.47141 * 65.00257 * 4 2 1
6 6 O 1.21297 * 119.99950 * 359.97438 * 5 4 2
7 7 N 1.34774 * 119.99947 * 179.97438 * 5 4 2
8 8 C 1.39995 * 119.99754 * 175.49055 * 7 5 4
9 9 C 1.38926 * 119.99934 * 214.85032 * 8 7 5
10 10 C 1.37997 * 119.99776 * 179.79586 * 9 8 7
11 11 C 1.38905 * 120.00014 * 0.45730 * 10 9 8
12 12 O 1.35781 * 120.00008 * 179.76982 * 11 10 9
13 13 C 1.34811 * 117.00486 * 185.36360 * 12 11 10
14 14 H 1.08002 * 119.99808 * 354.96540 * 13 12 11
15 15 C 1.38633 * 120.00407 * 174.96586 * 13 12 11
16 16 N 1.31569 * 119.99979 * 180.02562 * 15 13 12
17 17 Si 1.86796 * 119.99827 * 0.02562 * 15 13 12
18 18 H 1.48500 * 109.47369 * 89.99968 * 17 15 13
19 19 H 1.48499 * 109.46962 * 210.00167 * 17 15 13
20 20 H 1.48501 * 109.47282 * 330.00072 * 17 15 13
21 21 C 1.38912 * 120.00455 * 359.79043 * 11 10 9
22 22 C 1.37996 * 120.00053 * 359.97438 * 21 11 10
23 23 C 1.50706 * 109.46779 * 119.99580 * 2 1 3
24 24 C 1.38651 * 120.78783 * 240.00057 * 23 2 1
25 25 C 1.38206 * 119.15978 * 179.97438 * 24 23 2
26 26 N 1.31871 * 120.76220 * 359.97438 * 25 24 23
27 27 C 1.31864 * 121.72923 * 0.02562 * 26 25 24
28 28 C 1.38203 * 120.76606 * 0.02562 * 27 26 25
29 29 H 1.09003 * 109.46701 * 60.00594 * 1 2 3
30 30 H 1.09001 * 109.46972 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47470 * 300.00726 * 1 2 3
32 32 H 1.08997 * 109.46773 * 185.00344 * 4 2 1
33 33 H 1.08995 * 109.46646 * 304.99868 * 4 2 1
34 34 H 0.97000 * 120.00317 * 355.49838 * 7 5 4
35 35 H 1.08007 * 119.99835 * 0.02562 * 9 8 7
36 36 H 1.07999 * 119.99952 * 180.23275 * 10 9 8
37 37 H 0.97002 * 119.99776 * 180.02562 * 16 15 13
38 38 H 1.08000 * 119.99448 * 179.97438 * 21 11 10
39 39 H 1.07997 * 120.00176 * 179.97438 * 22 21 11
40 40 H 1.07994 * 120.41921 * 359.96045 * 24 23 2
41 41 H 1.07997 * 119.61876 * 179.97438 * 25 24 23
42 42 H 1.07999 * 119.62305 * 179.97438 * 27 26 25
43 43 H 1.07997 * 120.42359 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.6415 0.0569 -2.4765
6 8 1.0110 1.0870 -2.3633
7 7 1.9856 -0.3916 -3.7000
8 6 1.5355 0.2792 -4.8435
9 6 1.2255 -0.4377 -5.9924
10 6 0.7778 0.2231 -7.1181
11 6 0.6463 1.6058 -7.1056
12 8 0.2103 2.2564 -8.2148
13 6 0.2107 3.6039 -8.1739
14 1 0.4703 4.1163 -7.2593
15 6 -0.1220 4.3319 -9.3058
16 7 -0.1211 5.6470 -9.2659
17 14 -0.5715 3.4457 -10.8875
18 1 -2.0357 3.2000 -10.9183
19 1 -0.1856 4.2836 -12.0512
20 1 0.1494 2.1489 -10.9505
21 6 0.9612 2.3232 -5.9585
22 6 1.4043 1.6621 -4.8311
23 6 2.0323 -0.7104 1.2306
24 6 2.8303 -0.0523 2.1539
25 6 3.2718 -0.7360 3.2709
26 7 2.9419 -1.9982 3.4632
27 6 2.1850 -2.6554 2.6065
28 6 1.7073 -2.0375 1.4663
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 3.1264 -0.7995 -1.2054
33 1 1.6055 -1.7198 -1.2950
34 1 2.5449 -1.1791 -3.7883
35 1 1.3312 -1.5125 -6.0033
36 1 0.5332 -0.3345 -8.0101
37 1 -0.3542 6.1564 -10.0578
38 1 0.8593 3.3983 -5.9490
39 1 1.6495 2.2198 -3.9394
40 1 3.1036 0.9814 2.0020
41 1 3.8941 -0.2308 3.9946
42 1 1.9360 -3.6888 2.7975
43 1 1.0874 -2.5809 0.7686
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001329906655.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:57:16
Heat of formation + Delta-G solvation = -3.731686 kcal
Electronic energy + Delta-G solvation = -25748.381069 eV
Core-core repulsion = 21952.270437 eV
Total energy + Delta-G solvation = -3796.110633 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.81451 -40.15609 -38.91292 -36.97573 -35.77918 -34.08042 -32.35251 -31.63838
-31.29195 -30.32007 -29.04769 -27.35943 -25.20105 -24.56419 -23.75555 -22.63216
-21.75134 -20.72133 -19.98646 -18.14930 -17.66638 -17.43610 -16.81286 -16.44639
-16.40486 -15.85678 -15.56928 -14.70019 -14.59190 -14.39381 -14.09538 -13.93603
-13.84787 -13.82488 -13.54537 -13.43136 -12.93026 -12.68081 -12.42700 -12.30571
-12.19303 -11.90955 -11.74477 -11.60673 -11.50105 -11.11460 -10.96769 -10.76296
-10.26475 -9.93337 -9.80505 -9.76843 -9.62814 -9.50185 -9.24531 -8.78788
-8.32281 -7.10214 -6.42642 -4.08621 0.78663 0.89482 1.94582 2.08224
2.72782 3.16051 3.21800 3.24477 3.38426 3.47879 4.11766 4.20445
4.22212 4.29556 4.44577 4.57489 4.73376 4.76460 4.80350 4.81228
4.85113 5.08614 5.10320 5.25535 5.31602 5.38393 5.44464 5.51606
5.59303 5.61711 5.71475 5.81872 6.02382 6.05733 6.08621 6.20669
6.23124 6.35872 6.55905 6.72704 6.86407 7.06764 7.26888 7.51539
7.62021 7.63002 7.77674 8.00914 8.26972 8.92163 9.53642 10.64858
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.035063 B = 0.001985 C = 0.001925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 798.371834 B =14099.675710 C =14542.275410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.038 4.038
3 H 0.093 0.907
4 C -0.132 4.132
5 C 0.506 3.494
6 O -0.520 6.520
7 N -0.662 5.662
8 C 0.041 3.959
9 C -0.096 4.096
10 C -0.178 4.178
11 C 0.152 3.848
12 O -0.216 6.216
13 C -0.389 4.389
14 H 0.107 0.893
15 C 0.063 3.937
16 N -0.878 5.878
17 Si 0.906 3.094
18 H -0.273 1.273
19 H -0.282 1.282
20 H -0.260 1.260
21 C -0.207 4.207
22 C -0.066 4.066
23 C -0.029 4.029
24 C -0.169 4.169
25 C 0.099 3.901
26 N -0.492 5.492
27 C 0.098 3.902
28 C -0.169 4.169
29 H 0.086 0.914
30 H 0.051 0.949
31 H 0.055 0.945
32 H 0.094 0.906
33 H 0.096 0.904
34 H 0.402 0.598
35 H 0.116 0.884
36 H 0.121 0.879
37 H 0.280 0.720
38 H 0.137 0.863
39 H 0.128 0.872
40 H 0.136 0.864
41 H 0.155 0.845
42 H 0.154 0.846
43 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.084 -16.415 19.618 26.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.057 4.057
3 H 0.111 0.889
4 C -0.172 4.172
5 C 0.293 3.707
6 O -0.396 6.396
7 N -0.307 5.307
8 C -0.051 4.051
9 C -0.116 4.116
10 C -0.198 4.198
11 C 0.099 3.901
12 O -0.121 6.121
13 C -0.464 4.464
14 H 0.124 0.876
15 C -0.141 4.141
16 N -0.516 5.516
17 Si 0.732 3.268
18 H -0.199 1.199
19 H -0.208 1.208
20 H -0.184 1.184
21 C -0.227 4.227
22 C -0.086 4.086
23 C -0.038 4.038
24 C -0.189 4.189
25 C -0.058 4.058
26 N -0.201 5.201
27 C -0.059 4.059
28 C -0.189 4.189
29 H 0.104 0.896
30 H 0.070 0.930
31 H 0.074 0.926
32 H 0.112 0.888
33 H 0.114 0.886
34 H 0.237 0.763
35 H 0.134 0.866
36 H 0.139 0.861
37 H 0.090 0.910
38 H 0.154 0.846
39 H 0.146 0.854
40 H 0.153 0.847
41 H 0.172 0.828
42 H 0.172 0.828
43 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 5.803 -15.979 20.133 26.350
hybrid contribution -0.202 -0.120 -1.432 1.451
sum 5.601 -16.100 18.701 25.304
Atomic orbital electron populations
1.21979 0.92970 1.01958 1.03854 1.19939 0.97279 0.99397 0.89050
0.88896 1.21717 1.03047 1.00233 0.92184 1.20593 0.79596 0.86122
0.84367 1.90701 1.39136 1.23693 1.86095 1.43260 1.51598 1.31242
1.04595 1.17321 1.09317 0.91453 0.87005 1.20354 1.00728 0.98204
0.92319 1.19985 1.08898 0.91758 0.99137 1.19156 0.92473 0.91496
0.86967 1.83562 1.73047 1.21933 1.33558 1.20775 1.48054 0.76779
1.00822 0.87571 1.24476 0.96039 0.94880 0.98678 1.69656 1.46317
1.04636 1.30983 0.86167 0.79416 0.80109 0.81120 1.19887 1.20819
1.18357 1.21235 1.07277 1.01345 0.92862 1.20901 0.97654 0.92180
0.97843 1.20371 0.93972 0.93858 0.95557 1.22141 0.99368 1.01702
0.95678 1.22774 0.96831 0.90373 0.95802 1.67675 1.12542 1.09296
1.30605 1.22760 0.93080 0.99949 0.90084 1.22036 1.01994 0.95339
0.99487 0.89551 0.92986 0.92632 0.88751 0.88594 0.76348 0.86603
0.86084 0.91032 0.84591 0.85449 0.84655 0.82791 0.82846 0.84801
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.42 8.76 37.16 0.33 -1.09 16
2 C -0.04 -0.32 2.24 -91.77 -0.21 -0.53 16
3 H 0.09 0.88 7.76 -51.93 -0.40 0.48 16
4 C -0.13 -1.01 4.93 -27.89 -0.14 -1.15 16
5 C 0.51 6.09 7.39 -10.99 -0.08 6.01 16
6 O -0.52 -8.32 11.40 5.54 0.06 -8.26 16
7 N -0.66 -7.90 5.34 -9.82 -0.05 -7.95 16
8 C 0.04 0.68 6.30 -83.62 -0.53 0.15 16
9 C -0.10 -1.52 9.96 -39.42 -0.39 -1.91 16
10 C -0.18 -3.38 9.98 -39.42 -0.39 -3.77 16
11 C 0.15 3.46 6.65 -39.09 -0.26 3.20 16
12 O -0.22 -5.65 8.58 0.01 0.00 -5.65 16
13 C -0.39 -10.93 9.94 30.88 0.31 -10.62 16
14 H 0.11 3.07 5.43 -52.49 -0.28 2.78 16
15 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16
16 N -0.88 -25.34 13.96 55.48 0.77 -24.57 16
17 Si 0.91 21.52 28.62 -169.99 -4.86 16.65 16
18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16
19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
20 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16
21 C -0.21 -4.56 9.16 -39.42 -0.36 -4.92 16
22 C -0.07 -1.27 8.69 -39.42 -0.34 -1.61 16
23 C -0.03 -0.23 4.80 -104.31 -0.50 -0.73 16
24 C -0.17 -1.28 9.76 -39.44 -0.39 -1.66 16
25 C 0.10 0.78 11.18 -17.55 -0.20 0.59 16
26 N -0.49 -4.61 10.36 -13.26 -0.14 -4.75 16
27 C 0.10 0.75 11.18 -17.55 -0.20 0.55 16
28 C -0.17 -1.19 8.89 -39.44 -0.35 -1.54 16
29 H 0.09 1.05 5.95 -51.93 -0.31 0.74 16
30 H 0.05 0.42 7.48 -51.93 -0.39 0.03 16
31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16
33 H 0.10 0.56 7.67 -51.93 -0.40 0.16 16
34 H 0.40 3.26 8.82 -40.82 -0.36 2.90 16
35 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16
36 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16
37 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16
38 H 0.14 3.17 5.63 -52.49 -0.30 2.87 16
39 H 0.13 2.43 6.22 -52.49 -0.33 2.11 16
40 H 0.14 0.81 8.01 -52.49 -0.42 0.39 16
41 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16
42 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16
43 H 0.13 0.70 7.35 -52.49 -0.39 0.31 16
LS Contribution 362.03 15.07 5.46 5.46
Total: -1.00 -32.84 362.03 -7.80 -40.64
By element:
Atomic # 1 Polarization: 11.06 SS G_CDS: -5.24 Total: 5.81 kcal
Atomic # 6 Polarization: -13.59 SS G_CDS: -3.79 Total: -17.39 kcal
Atomic # 7 Polarization: -37.85 SS G_CDS: 0.58 Total: -37.26 kcal
Atomic # 8 Polarization: -13.97 SS G_CDS: 0.06 Total: -13.91 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -4.86 Total: 16.65 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -32.84 -7.80 -40.64 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329906655.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.906 kcal
(2) G-P(sol) polarization free energy of solvation -32.842 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.065 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.732 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds