Wall clock time and date at job start Tue Mar 31 2020 14:57:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.46972 * 2 1
4 4 C 1.53001 * 109.47317 * 239.99709 * 2 1 3
5 5 C 1.50694 * 109.47141 * 65.00257 * 4 2 1
6 6 O 1.21297 * 119.99950 * 359.97438 * 5 4 2
7 7 N 1.34774 * 119.99947 * 179.97438 * 5 4 2
8 8 C 1.39995 * 119.99754 * 175.49055 * 7 5 4
9 9 C 1.38926 * 119.99934 * 214.85032 * 8 7 5
10 10 C 1.37997 * 119.99776 * 179.79586 * 9 8 7
11 11 C 1.38905 * 120.00014 * 0.45730 * 10 9 8
12 12 O 1.35781 * 120.00008 * 179.76982 * 11 10 9
13 13 C 1.34811 * 117.00486 * 185.36360 * 12 11 10
14 14 H 1.08002 * 119.99808 * 354.96540 * 13 12 11
15 15 C 1.38633 * 120.00407 * 174.96586 * 13 12 11
16 16 N 1.31569 * 119.99979 * 180.02562 * 15 13 12
17 17 Si 1.86796 * 119.99827 * 0.02562 * 15 13 12
18 18 H 1.48500 * 109.47369 * 89.99968 * 17 15 13
19 19 H 1.48499 * 109.46962 * 210.00167 * 17 15 13
20 20 H 1.48501 * 109.47282 * 330.00072 * 17 15 13
21 21 C 1.38912 * 120.00455 * 359.79043 * 11 10 9
22 22 C 1.37996 * 120.00053 * 359.97438 * 21 11 10
23 23 C 1.50706 * 109.46779 * 119.99580 * 2 1 3
24 24 C 1.38651 * 120.78783 * 240.00057 * 23 2 1
25 25 C 1.38206 * 119.15978 * 179.97438 * 24 23 2
26 26 N 1.31871 * 120.76220 * 359.97438 * 25 24 23
27 27 C 1.31864 * 121.72923 * 0.02562 * 26 25 24
28 28 C 1.38203 * 120.76606 * 0.02562 * 27 26 25
29 29 H 1.09003 * 109.46701 * 60.00594 * 1 2 3
30 30 H 1.09001 * 109.46972 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47470 * 300.00726 * 1 2 3
32 32 H 1.08997 * 109.46773 * 185.00344 * 4 2 1
33 33 H 1.08995 * 109.46646 * 304.99868 * 4 2 1
34 34 H 0.97000 * 120.00317 * 355.49838 * 7 5 4
35 35 H 1.08007 * 119.99835 * 0.02562 * 9 8 7
36 36 H 1.07999 * 119.99952 * 180.23275 * 10 9 8
37 37 H 0.97002 * 119.99776 * 180.02562 * 16 15 13
38 38 H 1.08000 * 119.99448 * 179.97438 * 21 11 10
39 39 H 1.07997 * 120.00176 * 179.97438 * 22 21 11
40 40 H 1.07994 * 120.41921 * 359.96045 * 24 23 2
41 41 H 1.07997 * 119.61876 * 179.97438 * 25 24 23
42 42 H 1.07999 * 119.62305 * 179.97438 * 27 26 25
43 43 H 1.07997 * 120.42359 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.6415 0.0569 -2.4765
6 8 1.0110 1.0870 -2.3633
7 7 1.9856 -0.3916 -3.7000
8 6 1.5355 0.2792 -4.8435
9 6 1.2255 -0.4377 -5.9924
10 6 0.7778 0.2231 -7.1181
11 6 0.6463 1.6058 -7.1056
12 8 0.2103 2.2564 -8.2148
13 6 0.2107 3.6039 -8.1739
14 1 0.4703 4.1163 -7.2593
15 6 -0.1220 4.3319 -9.3058
16 7 -0.1211 5.6470 -9.2659
17 14 -0.5715 3.4457 -10.8875
18 1 -2.0357 3.2000 -10.9183
19 1 -0.1856 4.2836 -12.0512
20 1 0.1494 2.1489 -10.9505
21 6 0.9612 2.3232 -5.9585
22 6 1.4043 1.6621 -4.8311
23 6 2.0323 -0.7104 1.2306
24 6 2.8303 -0.0523 2.1539
25 6 3.2718 -0.7360 3.2709
26 7 2.9419 -1.9982 3.4632
27 6 2.1850 -2.6554 2.6065
28 6 1.7073 -2.0375 1.4663
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 3.1264 -0.7995 -1.2054
33 1 1.6055 -1.7198 -1.2950
34 1 2.5449 -1.1791 -3.7883
35 1 1.3312 -1.5125 -6.0033
36 1 0.5332 -0.3345 -8.0101
37 1 -0.3542 6.1564 -10.0578
38 1 0.8593 3.3983 -5.9490
39 1 1.6495 2.2198 -3.9394
40 1 3.1036 0.9814 2.0020
41 1 3.8941 -0.2308 3.9946
42 1 1.9360 -3.6888 2.7975
43 1 1.0874 -2.5809 0.7686
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001329906655.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:57:15
Heat of formation + Delta-G solvation = -24.609204 kcal
Electronic energy + Delta-G solvation = -25749.286386 eV
Core-core repulsion = 21952.270437 eV
Total energy + Delta-G solvation = -3797.015950 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.69727 -41.09423 -40.42978 -38.40795 -36.62327 -35.37981 -34.37371 -32.22545
-31.96944 -31.81445 -30.24698 -28.49700 -27.03534 -25.28968 -24.32608 -24.07495
-23.09190 -21.76647 -20.95480 -19.90779 -19.24942 -18.39209 -18.15939 -17.29284
-17.10061 -16.68386 -16.39768 -16.24483 -15.78045 -15.68865 -15.56028 -15.26162
-15.02537 -14.62261 -14.45264 -14.36677 -14.26777 -14.10923 -14.02052 -13.50278
-13.33181 -13.27633 -12.77977 -12.71007 -12.46950 -12.42468 -12.28150 -12.00719
-11.75414 -11.46405 -11.14923 -10.80392 -10.55255 -10.46252 -10.35054 -10.02935
-9.85590 -8.66475 -8.49599 -6.21964 0.25938 0.31951 0.48120 0.52724
1.32436 1.37007 1.53092 1.67951 2.15712 2.28748 2.76631 2.91547
3.03298 3.17315 3.48762 3.66050 3.68039 3.90144 4.05322 4.10077
4.14972 4.19293 4.25887 4.28783 4.46330 4.46883 4.60993 4.67620
4.73151 4.74292 4.80315 4.93919 4.95574 5.05991 5.11062 5.15424
5.20447 5.37925 5.38740 5.49739 5.53170 5.62331 5.75494 5.83719
5.92042 6.21079 6.57687 6.84052 7.08795 7.29413 7.57174 8.62186
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.035063 B = 0.001985 C = 0.001925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 798.371834 B =14099.675710 C =14542.275410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.033 4.033
3 H 0.075 0.925
4 C -0.119 4.119
5 C 0.504 3.496
6 O -0.563 6.563
7 N -0.651 5.651
8 C 0.072 3.928
9 C -0.079 4.079
10 C -0.169 4.169
11 C 0.110 3.890
12 O -0.241 6.241
13 C -0.399 4.399
14 H 0.075 0.925
15 C 0.006 3.994
16 N -0.925 5.925
17 Si 0.976 3.024
18 H -0.266 1.266
19 H -0.268 1.268
20 H -0.257 1.257
21 C -0.225 4.225
22 C -0.081 4.081
23 C -0.034 4.034
24 C -0.176 4.176
25 C 0.088 3.912
26 N -0.520 5.520
27 C 0.088 3.912
28 C -0.164 4.164
29 H 0.055 0.945
30 H 0.070 0.930
31 H 0.050 0.950
32 H 0.120 0.880
33 H 0.129 0.871
34 H 0.428 0.572
35 H 0.174 0.826
36 H 0.143 0.857
37 H 0.285 0.715
38 H 0.103 0.897
39 H 0.122 0.878
40 H 0.144 0.856
41 H 0.170 0.830
42 H 0.175 0.825
43 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.868 -21.220 20.369 30.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.052 4.052
3 H 0.094 0.906
4 C -0.159 4.159
5 C 0.294 3.706
6 O -0.441 6.441
7 N -0.299 5.299
8 C -0.022 4.022
9 C -0.099 4.099
10 C -0.188 4.188
11 C 0.061 3.939
12 O -0.149 6.149
13 C -0.476 4.476
14 H 0.093 0.907
15 C -0.192 4.192
16 N -0.566 5.566
17 Si 0.798 3.202
18 H -0.191 1.191
19 H -0.193 1.193
20 H -0.181 1.181
21 C -0.245 4.245
22 C -0.102 4.102
23 C -0.042 4.042
24 C -0.196 4.196
25 C -0.068 4.068
26 N -0.229 5.229
27 C -0.068 4.068
28 C -0.184 4.184
29 H 0.074 0.926
30 H 0.089 0.911
31 H 0.069 0.931
32 H 0.138 0.862
33 H 0.147 0.853
34 H 0.267 0.733
35 H 0.191 0.809
36 H 0.161 0.839
37 H 0.094 0.906
38 H 0.121 0.879
39 H 0.140 0.860
40 H 0.162 0.838
41 H 0.187 0.813
42 H 0.192 0.808
43 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 6.628 -20.847 20.941 30.283
hybrid contribution -0.344 1.178 -1.270 1.766
sum 6.284 -19.669 19.671 28.518
Atomic orbital electron populations
1.21917 0.93851 1.02594 1.02113 1.19818 0.96454 0.98884 0.90033
0.90630 1.21742 1.04705 1.00544 0.88867 1.21458 0.78275 0.85605
0.85307 1.90721 1.40871 1.25845 1.86664 1.43233 1.51781 1.31656
1.03185 1.17464 1.05691 0.90369 0.88664 1.20876 0.97977 1.00733
0.90334 1.20410 1.07400 0.89902 1.01108 1.19708 0.94565 0.93247
0.86431 1.83500 1.75903 1.20343 1.35129 1.20666 1.48527 0.78222
1.00161 0.90722 1.25359 0.96101 0.95636 1.02093 1.69752 1.48523
1.06089 1.32250 0.85139 0.79271 0.78865 0.76948 1.19114 1.19324
1.18144 1.21130 1.08849 1.00145 0.94353 1.20915 0.98559 0.94044
0.96636 1.20314 0.94375 0.94324 0.95235 1.22304 0.99385 1.02228
0.95648 1.23070 0.97131 0.90269 0.96340 1.67690 1.13558 1.10028
1.31674 1.23182 0.92641 1.00943 0.90012 1.22245 1.01608 0.94904
0.99597 0.92595 0.91095 0.93065 0.86230 0.85314 0.73313 0.80915
0.83948 0.90584 0.87895 0.85967 0.83817 0.81284 0.80755 0.82474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.54 8.76 71.98 0.63 -1.91 16
2 C -0.03 -0.48 2.24 -11.54 -0.03 -0.51 16
3 H 0.08 1.37 7.76 -2.39 -0.02 1.35 16
4 C -0.12 -1.33 4.93 29.85 0.15 -1.18 16
5 C 0.50 10.63 7.39 87.66 0.65 11.28 16
6 O -0.56 -17.64 11.40 -3.08 -0.04 -17.67 16
7 N -0.65 -12.71 5.34 -303.37 -1.62 -14.33 16
8 C 0.07 2.14 6.30 38.16 0.24 2.38 16
9 C -0.08 -2.16 9.96 22.38 0.22 -1.94 16
10 C -0.17 -6.02 9.98 22.37 0.22 -5.80 16
11 C 0.11 5.15 6.65 22.59 0.15 5.30 16
12 O -0.24 -13.14 8.58 -22.88 -0.20 -13.33 16
13 C -0.40 -24.01 9.94 67.91 0.68 -23.34 16
14 H 0.08 4.79 5.43 -2.91 -0.02 4.77 16
15 C 0.01 0.36 5.49 84.83 0.47 0.83 16
16 N -0.93 -56.27 13.96 21.61 0.30 -55.97 16
17 Si 0.98 45.50 28.62 68.60 1.96 47.46 16
18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16
21 C -0.22 -10.51 9.16 22.37 0.20 -10.30 16
22 C -0.08 -3.16 8.69 22.38 0.19 -2.97 16
23 C -0.03 -0.44 4.80 -19.66 -0.09 -0.53 16
24 C -0.18 -2.35 9.76 22.36 0.22 -2.13 16
25 C 0.09 1.26 11.18 84.68 0.95 2.20 16
26 N -0.52 -8.77 10.36 -195.85 -2.03 -10.79 16
27 C 0.09 1.10 11.18 84.68 0.95 2.05 16
28 C -0.16 -1.71 8.89 22.36 0.20 -1.51 16
29 H 0.06 1.34 5.95 -2.39 -0.01 1.32 16
30 H 0.07 0.92 7.48 -2.39 -0.02 0.90 16
31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16
33 H 0.13 0.70 7.67 -2.39 -0.02 0.68 16
34 H 0.43 4.31 8.82 -92.71 -0.82 3.50 16
35 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16
36 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16
37 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16
38 H 0.10 5.40 5.63 -2.91 -0.02 5.38 16
39 H 0.12 4.85 6.22 -2.91 -0.02 4.83 16
40 H 0.14 1.56 8.01 -2.91 -0.02 1.54 16
41 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16
42 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16
43 H 0.16 0.84 7.35 -2.91 -0.02 0.82 16
Total: -1.00 -78.61 362.03 4.61 -74.00
By element:
Atomic # 1 Polarization: 18.49 SS G_CDS: 0.24 Total: 18.73 kcal
Atomic # 6 Polarization: -34.09 SS G_CDS: 5.99 Total: -28.09 kcal
Atomic # 7 Polarization: -77.74 SS G_CDS: -3.35 Total: -81.09 kcal
Atomic # 8 Polarization: -30.77 SS G_CDS: -0.23 Total: -31.00 kcal
Atomic # 14 Polarization: 45.50 SS G_CDS: 1.96 Total: 47.46 kcal
Total: -78.61 4.61 -74.00 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329906655.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.388 kcal
(2) G-P(sol) polarization free energy of solvation -78.611 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds