Wall clock time and date at job start Tue Mar 31 2020 14:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46973 * 2 1 4 4 C 1.52999 * 109.47080 * 120.00093 * 2 1 3 5 5 C 1.50694 * 109.47063 * 184.99413 * 4 2 1 6 6 C 1.38229 * 119.61461 * 125.00230 * 5 4 2 7 7 C 1.38631 * 119.16085 * 179.97438 * 6 5 4 8 8 C 1.38672 * 118.41799 * 0.02562 * 7 6 5 9 9 C 1.38182 * 119.16611 * 359.97438 * 8 7 6 10 10 N 1.31848 * 119.62143 * 304.73134 * 5 4 2 11 11 N 1.46498 * 109.46750 * 240.00297 * 2 1 3 12 12 C 1.34774 * 120.00066 * 84.99926 * 11 2 1 13 13 O 1.21594 * 119.99982 * 0.02562 * 12 11 2 14 14 C 1.47542 * 119.99951 * 179.97438 * 12 11 2 15 15 C 1.39663 * 120.19571 * 0.02562 * 14 12 11 16 16 C 1.37823 * 119.91632 * 179.97438 * 15 14 12 17 17 C 1.38578 * 120.32709 * 359.97438 * 16 15 14 18 18 C 1.38026 * 120.39805 * 359.97438 * 17 16 15 19 19 C 1.38829 * 120.07252 * 0.02562 * 18 17 16 20 20 O 1.35523 * 120.15992 * 179.97438 * 19 18 17 21 21 C 1.34812 * 117.00069 * 354.40356 * 20 19 18 22 22 H 1.07998 * 119.99529 * 5.07442 * 21 20 19 23 23 C 1.38692 * 120.00205 * 185.07392 * 21 20 19 24 24 N 1.31524 * 120.00115 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00356 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46879 * 60.00120 * 25 23 21 27 27 H 1.48502 * 109.47076 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46872 * 300.00101 * 25 23 21 29 29 H 1.09002 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46692 * 299.99801 * 1 2 3 31 31 H 1.08999 * 109.47435 * 59.99211 * 1 2 3 32 32 H 1.08996 * 109.47408 * 305.00344 * 4 2 1 33 33 H 1.09009 * 109.46841 * 65.00011 * 4 2 1 34 34 H 1.08000 * 120.42308 * 359.95779 * 6 5 4 35 35 H 1.07997 * 120.78797 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.41859 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.61473 * 180.02562 * 9 8 7 38 38 H 0.97003 * 119.99730 * 264.99775 * 11 2 1 39 39 H 1.08004 * 120.04127 * 359.95621 * 15 14 12 40 40 H 1.08003 * 119.83828 * 180.02562 * 16 15 14 41 41 H 1.08001 * 119.79947 * 180.02562 * 17 16 15 42 42 H 1.07998 * 119.96343 * 179.74103 * 18 17 16 43 43 H 0.97002 * 120.00579 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3126 6 6 4.1427 -0.0938 2.4431 7 6 5.5250 -0.0009 2.4916 8 6 6.2546 -0.4373 1.3960 9 6 5.5844 -0.9470 0.3004 10 7 4.2679 -1.0253 0.2914 11 7 2.0183 -0.6906 -1.1962 12 6 2.1469 -0.0182 -2.3571 13 8 1.8582 1.1617 -2.4116 14 6 2.6392 -0.7135 -3.5617 15 6 2.9725 -2.0686 -3.5037 16 6 3.4313 -2.7125 -4.6326 17 6 3.5635 -2.0223 -5.8269 18 6 3.2369 -0.6832 -5.8995 19 6 2.7732 -0.0181 -4.7725 20 8 2.4525 1.2968 -4.8417 21 6 2.7151 1.9306 -6.0021 22 1 3.0849 1.3733 -6.8501 23 6 2.5105 3.2983 -6.1071 24 7 2.0606 3.9771 -5.0743 25 14 2.8737 4.1765 -7.7153 26 1 2.0289 3.6037 -8.7938 27 1 2.5748 5.6236 -7.5675 28 1 4.3068 4.0005 -8.0626 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2055 34 1 3.5428 0.2372 3.2780 35 1 6.0219 0.4017 3.3619 36 1 7.3332 -0.3802 1.3993 37 1 6.1455 -1.2893 -0.5567 38 1 2.2490 -1.6317 -1.1527 39 1 2.8712 -2.6110 -2.5753 40 1 3.6883 -3.7605 -4.5864 41 1 3.9234 -2.5355 -6.7064 42 1 3.3466 -0.1511 -6.8329 43 1 1.9178 4.9338 -5.1474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361773602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:56 Heat of formation + Delta-G solvation = -22.918903 kcal Electronic energy + Delta-G solvation = -27345.027882 eV Core-core repulsion = 23548.085229 eV Total energy + Delta-G solvation = -3796.942653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39566 -40.95760 -39.77126 -38.00243 -36.93651 -34.32147 -33.61880 -33.23852 -32.31031 -30.83613 -30.52049 -27.93581 -27.35943 -25.01037 -24.33243 -23.49932 -23.01623 -21.84691 -21.28075 -19.80827 -19.16961 -17.87775 -17.71126 -17.18839 -16.97157 -16.40818 -16.32448 -16.07792 -15.87244 -15.67713 -15.30933 -15.17945 -14.86726 -14.67069 -14.40225 -14.14471 -14.00432 -13.76290 -13.53897 -13.28570 -12.98951 -12.94222 -12.87485 -12.66455 -12.48975 -12.34259 -12.28313 -12.14987 -11.98436 -11.38814 -10.81521 -10.72882 -10.50023 -10.32829 -9.93240 -9.82509 -9.63649 -8.99944 -8.43083 -6.14245 0.18904 0.23094 0.44731 0.75794 1.31020 1.44624 1.49293 2.16459 2.21518 2.45608 2.90359 2.90629 3.26917 3.41648 3.51090 3.71523 3.98348 4.05971 4.11404 4.12588 4.21415 4.29606 4.32041 4.35964 4.41182 4.56356 4.64491 4.70959 4.75449 4.82170 4.88269 4.92372 5.02372 5.08070 5.12575 5.20630 5.28001 5.31187 5.34237 5.53043 5.64488 5.71786 5.80450 5.86820 5.97915 6.20309 6.88678 6.95985 7.15674 7.66271 7.83884 8.77523 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.003749 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.866086 B = 7467.180896 C = 7955.062871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.151 3.849 3 H 0.039 0.961 4 C -0.065 4.065 5 C 0.104 3.896 6 C -0.174 4.174 7 C -0.081 4.081 8 C -0.182 4.182 9 C 0.078 3.922 10 N -0.496 5.496 11 N -0.693 5.693 12 C 0.550 3.450 13 O -0.579 6.579 14 C -0.239 4.239 15 C -0.025 4.025 16 C -0.201 4.201 17 C -0.042 4.042 18 C -0.259 4.259 19 C 0.147 3.853 20 O -0.189 6.189 21 C -0.429 4.429 22 H 0.105 0.895 23 C -0.023 4.023 24 N -0.907 5.907 25 Si 1.022 2.978 26 H -0.253 1.253 27 H -0.273 1.273 28 H -0.254 1.254 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.020 0.980 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.409 0.591 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.154 0.846 42 H 0.122 0.878 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -15.393 14.585 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.058 0.942 4 C -0.103 4.103 5 C -0.033 4.033 6 C -0.194 4.194 7 C -0.107 4.107 8 C -0.202 4.202 9 C -0.079 4.079 10 N -0.206 5.206 11 N -0.347 5.347 12 C 0.340 3.660 13 O -0.459 6.459 14 C -0.244 4.244 15 C -0.044 4.044 16 C -0.220 4.220 17 C -0.060 4.060 18 C -0.278 4.278 19 C 0.092 3.908 20 O -0.092 6.092 21 C -0.505 4.505 22 H 0.123 0.877 23 C -0.222 4.222 24 N -0.543 5.543 25 Si 0.840 3.160 26 H -0.177 1.177 27 H -0.197 1.197 28 H -0.179 1.179 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.039 0.961 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.247 0.753 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.171 0.829 42 H 0.140 0.860 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.576 -14.516 14.081 20.734 hybrid contribution 0.681 1.073 -0.247 1.295 sum 5.257 -13.443 13.834 19.993 Atomic orbital electron populations 1.22130 0.94239 1.03148 1.01825 1.20765 0.94321 0.95768 0.84552 0.94239 1.20935 0.88283 1.03336 0.97712 1.21577 0.97100 0.94752 0.89909 1.22321 0.96277 1.01003 0.99779 1.21976 0.94082 0.95605 0.99018 1.22422 1.02680 1.00384 0.94692 1.23040 0.90308 0.96146 0.98420 1.67416 1.08065 1.17097 1.28018 1.45547 1.67314 1.13977 1.07842 1.18444 0.77318 0.86006 0.84267 1.90901 1.51598 1.17822 1.85563 1.19369 1.16898 0.96384 0.91758 1.21225 0.93201 0.90206 0.99766 1.21141 1.07130 1.01546 0.92142 1.21398 0.93524 0.91811 0.99234 1.21282 1.11031 0.97404 0.98125 1.20101 0.91251 0.85226 0.94207 1.84191 1.70247 1.17894 1.36891 1.22000 1.46795 0.92217 0.89472 0.87744 1.26766 0.95861 0.96094 1.03452 1.70335 1.42805 1.08483 1.32658 0.84631 0.79746 0.76800 0.74805 1.17715 1.19732 1.17863 0.90074 0.89233 0.96104 0.85710 0.87360 0.82191 0.82070 0.82781 0.82578 0.75328 0.83011 0.82050 0.82881 0.86003 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.48 71.98 0.68 -3.50 16 2 C 0.15 4.56 2.56 44.99 0.12 4.68 16 3 H 0.04 1.55 7.58 -2.39 -0.02 1.53 16 4 C -0.06 -1.25 5.19 29.85 0.15 -1.10 16 5 C 0.10 2.45 6.17 42.55 0.26 2.71 16 6 C -0.17 -3.24 9.71 22.36 0.22 -3.02 16 7 C -0.08 -1.40 10.18 22.47 0.23 -1.17 16 8 C -0.18 -3.54 10.11 22.36 0.23 -3.32 16 9 C 0.08 1.93 11.18 84.67 0.95 2.87 16 10 N -0.50 -13.73 8.58 -183.89 -1.58 -15.31 16 11 N -0.69 -24.10 3.80 -445.69 -1.69 -25.79 16 12 C 0.55 26.75 7.73 86.70 0.67 27.42 16 13 O -0.58 -36.00 14.83 16.88 0.25 -35.75 16 14 C -0.24 -11.16 5.89 -19.99 -0.12 -11.28 16 15 C -0.03 -0.85 9.53 22.52 0.21 -0.64 16 16 C -0.20 -5.87 10.02 22.25 0.22 -5.65 16 17 C -0.04 -1.38 10.03 22.30 0.22 -1.15 16 18 C -0.26 -11.66 9.16 22.36 0.20 -11.45 16 19 C 0.15 7.98 6.66 22.91 0.15 8.14 16 20 O -0.19 -12.57 7.84 0.83 0.01 -12.56 16 21 C -0.43 -26.90 9.49 67.93 0.64 -26.25 16 22 H 0.11 5.88 5.21 -2.91 -0.02 5.86 16 23 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 24 N -0.91 -61.07 13.67 21.62 0.30 -60.78 16 25 Si 1.02 45.54 29.55 68.60 2.03 47.56 16 26 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 1.58 7.87 -2.39 -0.02 1.56 16 33 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.16 1.93 7.95 -2.91 -0.02 1.91 16 35 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.41 11.57 6.25 -92.71 -0.58 10.99 16 39 H 0.15 3.85 6.40 -2.91 -0.02 3.83 16 40 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 42 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 43 H 0.27 16.65 8.31 -92.71 -0.77 15.88 16 Total: -1.00 -95.00 366.23 5.29 -89.71 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.47 Total: 36.57 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 5.52 Total: -23.65 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -2.97 Total: -101.88 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: 0.26 Total: -48.31 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -95.00 5.29 -89.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361773602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.791 kcal (2) G-P(sol) polarization free energy of solvation -95.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds