Wall clock time and date at job start Tue Mar 31 2020 15:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46840 * 2 1 4 4 C 1.35679 * 116.99813 * 179.97438 * 3 2 1 5 5 C 1.38917 * 119.68506 * 180.02562 * 4 3 2 6 6 C 1.38382 * 119.11647 * 179.97438 * 5 4 3 7 7 C 1.38829 * 118.48046 * 359.74014 * 6 5 4 8 8 C 1.38049 * 119.28750 * 0.52698 * 7 6 5 9 9 C 1.50708 * 119.58170 * 179.73531 * 8 7 6 10 10 C 1.50697 * 109.47336 * 124.72527 * 9 8 7 11 11 O 1.21288 * 120.00066 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99995 * 180.02562 * 10 9 8 13 13 C 1.39937 * 119.99919 * 184.52932 * 12 10 9 14 14 C 1.39292 * 119.94783 * 144.37341 * 13 12 10 15 15 C 1.38488 * 120.42662 * 179.97438 * 14 13 12 16 16 C 1.37682 * 120.32278 * 359.97438 * 15 14 13 17 17 C 1.40745 * 119.88616 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20941 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99600 * 155.37554 * 18 17 16 20 20 C 1.39932 * 120.00197 * 335.37692 * 18 17 16 21 21 N 1.30829 * 119.99813 * 344.59096 * 20 18 17 22 22 Si 1.86801 * 120.00231 * 164.59095 * 20 18 17 23 23 H 1.48494 * 109.46928 * 94.96938 * 22 20 18 24 24 H 1.48501 * 109.46972 * 214.96938 * 22 20 18 25 25 H 1.48501 * 109.46906 * 334.96890 * 22 20 18 26 26 C 1.38239 * 119.94494 * 324.09570 * 13 12 10 27 27 N 1.31955 * 120.83776 * 359.45468 * 8 7 6 28 28 H 1.09002 * 109.46858 * 299.99763 * 1 2 3 29 29 H 1.08998 * 109.47207 * 60.00173 * 1 2 3 30 30 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47341 * 240.00222 * 2 1 3 32 32 H 1.09000 * 109.47508 * 120.00269 * 2 1 3 33 33 H 1.08001 * 120.44404 * 359.96192 * 5 4 3 34 34 H 1.07998 * 120.76151 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.35680 * 180.26047 * 7 6 5 36 36 H 1.09002 * 109.46919 * 4.72640 * 9 8 7 37 37 H 1.09001 * 109.47122 * 244.72815 * 9 8 7 38 38 H 0.96995 * 120.00118 * 4.24703 * 12 10 9 39 39 H 1.07996 * 119.78713 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.83970 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.05493 * 179.97438 * 16 15 14 42 42 H 0.97003 * 120.00063 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.16508 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8752 2.8117 0.0011 6 6 5.2488 2.9794 0.0022 7 6 6.0539 1.8484 0.0082 8 6 5.4646 0.6000 0.0018 9 6 6.3322 -0.6323 0.0022 10 6 5.9543 -1.5124 1.1656 11 8 5.0673 -1.1727 1.9200 12 7 6.6019 -2.6769 1.3679 13 6 6.1890 -3.5387 2.3902 14 6 6.2578 -4.9178 2.2073 15 6 5.8524 -5.7797 3.2126 16 6 5.3769 -5.2821 4.4051 17 6 5.3016 -3.8909 4.6042 18 6 4.8139 -3.3724 5.8261 19 1 5.1076 -2.3846 6.1490 20 6 3.9508 -4.1392 6.6168 21 7 3.3568 -5.1882 6.1086 22 14 3.6468 -3.6651 8.3979 23 1 2.4188 -2.8349 8.4864 24 1 3.4740 -4.8933 9.2144 25 1 4.8061 -2.8902 8.9086 26 6 5.7189 -3.0199 3.5822 27 7 4.1513 0.4720 0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2192 3.6697 0.0005 34 1 5.6847 3.9676 0.0031 35 1 7.1296 1.9441 0.0135 36 1 7.3784 -0.3399 0.0926 37 1 6.1870 -1.1792 -0.9294 38 1 7.3515 -2.9196 0.8023 39 1 6.6305 -5.3175 1.2759 40 1 5.9102 -6.8475 3.0608 41 1 5.0615 -5.9582 5.1860 42 1 2.7582 -5.7196 6.6565 43 1 5.6690 -1.9507 3.7266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417869680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:37 Heat of formation + Delta-G solvation = -18.070697 kcal Electronic energy + Delta-G solvation = -26651.322177 eV Core-core repulsion = 22854.589759 eV Total energy + Delta-G solvation = -3796.732419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72363 -39.49651 -38.03609 -37.02720 -34.38771 -33.13079 -32.93022 -32.18664 -31.04176 -29.77577 -28.80575 -27.21921 -25.25653 -24.00070 -22.90570 -22.21540 -21.28295 -20.74924 -19.53939 -18.24908 -17.69220 -16.83068 -16.45304 -16.08512 -16.01889 -15.51809 -15.18062 -14.78530 -14.51086 -14.16544 -13.99103 -13.89400 -13.36280 -13.17103 -13.01886 -12.81037 -12.53204 -12.36557 -12.20416 -11.98284 -11.93005 -11.55760 -11.43544 -11.25970 -11.06059 -10.65574 -10.62082 -10.45918 -10.09290 -9.84704 -9.69405 -9.51420 -9.39418 -9.06666 -8.76349 -8.39938 -7.40036 -6.86214 -6.66927 -4.29737 1.10771 1.32287 2.69501 2.88674 3.09129 3.11169 3.16215 3.23089 3.37500 3.57242 3.93186 4.00174 4.09995 4.64070 4.68889 4.96378 5.03905 5.08199 5.09635 5.16567 5.23007 5.33210 5.34659 5.48158 5.66603 5.77269 5.78508 5.89586 5.94145 6.07480 6.13447 6.28724 6.42535 6.43945 6.83348 7.07538 7.10608 7.13632 7.30887 7.33078 7.62079 7.78494 7.96916 8.02788 8.14137 8.24253 8.32612 8.68934 8.81742 8.99053 9.03506 10.26328 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.003465 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.421527 B = 8077.866927 C = 9101.431167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.310 6.310 4 C 0.329 3.671 5 C -0.198 4.198 6 C -0.043 4.043 7 C -0.208 4.208 8 C 0.188 3.812 9 C -0.093 4.093 10 C 0.507 3.493 11 O -0.495 6.495 12 N -0.672 5.672 13 C 0.151 3.849 14 C -0.262 4.262 15 C -0.093 4.093 16 C -0.174 4.174 17 C 0.117 3.883 18 C -0.456 4.456 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.209 4.209 27 N -0.509 5.509 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.397 0.603 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.279 0.721 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 10.866 -13.407 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.217 6.217 4 C 0.150 3.850 5 C -0.219 4.219 6 C -0.068 4.068 7 C -0.229 4.229 8 C 0.051 3.949 9 C -0.134 4.134 10 C 0.292 3.708 11 O -0.368 6.368 12 N -0.316 5.316 13 C 0.060 3.940 14 C -0.284 4.284 15 C -0.112 4.112 16 C -0.194 4.194 17 C 0.114 3.886 18 C -0.485 4.485 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.421 5.421 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.231 4.231 27 N -0.232 5.232 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.231 0.769 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.710 10.322 -12.818 16.546 hybrid contribution 0.502 0.524 0.429 0.843 sum 2.212 10.847 -12.390 16.615 Atomic orbital electron populations 1.21808 0.93187 1.02967 1.02863 1.22636 0.94489 0.80690 1.03193 1.86185 1.16821 1.31124 1.87615 1.19748 0.84159 0.89670 0.91460 1.21029 0.95909 0.95708 1.09206 1.21297 0.92308 0.99171 0.94035 1.21719 1.01212 0.92513 1.07441 1.20171 0.88728 0.93415 0.92633 1.20663 0.99530 0.93602 0.99598 1.20177 0.82614 0.81835 0.86210 1.90795 1.29338 1.71247 1.45416 1.43408 1.34041 1.19732 1.34457 1.17422 1.00814 0.88466 0.87324 1.20046 1.16914 0.91203 1.00217 1.20464 0.99536 0.96845 0.94405 1.21401 1.04629 0.95963 0.97365 1.17521 0.88230 0.91379 0.91470 1.19560 1.24078 1.01952 1.02944 0.90592 1.25891 0.94047 0.94046 1.00216 1.69829 1.20962 1.14458 1.36890 0.86306 0.79575 0.78963 0.81922 1.19614 1.20056 1.18464 1.21053 1.10942 0.99067 0.92025 1.67069 1.05783 1.33070 1.17233 0.91663 0.92056 0.90228 0.91869 0.90646 0.84394 0.84240 0.84623 0.87257 0.87120 0.76942 0.89394 0.89147 0.86108 0.91025 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 16 2 C 0.07 0.95 6.03 37.16 0.22 1.17 16 3 O -0.31 -4.77 10.12 -18.74 -0.19 -4.96 16 4 C 0.33 5.11 7.49 -17.12 -0.13 4.99 16 5 C -0.20 -2.45 10.04 -39.28 -0.39 -2.84 16 6 C -0.04 -0.44 10.17 -39.31 -0.40 -0.84 16 7 C -0.21 -2.33 9.71 -39.43 -0.38 -2.71 16 8 C 0.19 2.66 5.76 -82.60 -0.48 2.18 16 9 C -0.09 -1.13 6.10 -29.03 -0.18 -1.31 16 10 C 0.51 9.08 7.60 -10.99 -0.08 8.99 16 11 O -0.50 -11.50 12.82 5.55 0.07 -11.43 16 12 N -0.67 -11.83 5.33 -9.91 -0.05 -11.88 16 13 C 0.15 3.46 6.28 -83.77 -0.53 2.93 16 14 C -0.26 -5.84 9.97 -39.10 -0.39 -6.23 16 15 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 16 C -0.17 -4.64 8.69 -38.84 -0.34 -4.98 16 17 C 0.12 3.28 5.58 -106.85 -0.60 2.68 16 18 C -0.46 -12.77 9.06 -37.74 -0.34 -13.11 16 19 H 0.08 2.09 7.89 -52.49 -0.41 1.67 16 20 C 0.07 1.96 5.19 -17.34 -0.09 1.87 16 21 N -0.80 -21.30 10.82 55.55 0.60 -20.70 16 22 Si 0.91 19.48 29.59 -169.99 -5.03 14.45 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 26 C -0.21 -5.53 8.43 -38.68 -0.33 -5.86 16 27 N -0.51 -8.47 8.08 -9.55 -0.08 -8.55 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.08 1.32 8.10 -51.93 -0.42 0.89 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.08 7.94 -52.49 -0.42 0.67 16 36 H 0.11 0.90 7.86 -51.93 -0.41 0.49 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.40 5.17 8.82 -40.82 -0.36 4.81 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.12 3.31 6.07 -52.49 -0.32 2.99 16 42 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 43 H 0.11 3.00 6.28 -52.48 -0.33 2.67 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -34.27 368.63 -9.17 -43.44 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.61 Total: 11.07 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -4.44 Total: -17.00 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.47 Total: -41.12 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.12 Total: -16.39 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.27 -9.17 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417869680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.367 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds