Wall clock time and date at job start Tue Mar 31 2020 15:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46840 * 2 1 4 4 C 1.35679 * 116.99813 * 179.97438 * 3 2 1 5 5 C 1.38917 * 119.68506 * 180.02562 * 4 3 2 6 6 C 1.38382 * 119.11647 * 179.97438 * 5 4 3 7 7 C 1.38829 * 118.48046 * 359.74014 * 6 5 4 8 8 C 1.38049 * 119.28750 * 0.52698 * 7 6 5 9 9 C 1.50708 * 119.58170 * 179.73531 * 8 7 6 10 10 C 1.50697 * 109.47336 * 124.72527 * 9 8 7 11 11 O 1.21288 * 120.00066 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99995 * 180.02562 * 10 9 8 13 13 C 1.39937 * 119.99919 * 184.52932 * 12 10 9 14 14 C 1.39292 * 119.94783 * 144.37341 * 13 12 10 15 15 C 1.38488 * 120.42662 * 179.97438 * 14 13 12 16 16 C 1.37682 * 120.32278 * 359.97438 * 15 14 13 17 17 C 1.40745 * 119.88616 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20941 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99600 * 155.37554 * 18 17 16 20 20 C 1.39932 * 120.00197 * 335.37692 * 18 17 16 21 21 N 1.30829 * 119.99813 * 344.59096 * 20 18 17 22 22 Si 1.86801 * 120.00231 * 164.59095 * 20 18 17 23 23 H 1.48494 * 109.46928 * 94.96938 * 22 20 18 24 24 H 1.48501 * 109.46972 * 214.96938 * 22 20 18 25 25 H 1.48501 * 109.46906 * 334.96890 * 22 20 18 26 26 C 1.38239 * 119.94494 * 324.09570 * 13 12 10 27 27 N 1.31955 * 120.83776 * 359.45468 * 8 7 6 28 28 H 1.09002 * 109.46858 * 299.99763 * 1 2 3 29 29 H 1.08998 * 109.47207 * 60.00173 * 1 2 3 30 30 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47341 * 240.00222 * 2 1 3 32 32 H 1.09000 * 109.47508 * 120.00269 * 2 1 3 33 33 H 1.08001 * 120.44404 * 359.96192 * 5 4 3 34 34 H 1.07998 * 120.76151 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.35680 * 180.26047 * 7 6 5 36 36 H 1.09002 * 109.46919 * 4.72640 * 9 8 7 37 37 H 1.09001 * 109.47122 * 244.72815 * 9 8 7 38 38 H 0.96995 * 120.00118 * 4.24703 * 12 10 9 39 39 H 1.07996 * 119.78713 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.83970 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.05493 * 179.97438 * 16 15 14 42 42 H 0.97003 * 120.00063 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.16508 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8752 2.8117 0.0011 6 6 5.2488 2.9794 0.0022 7 6 6.0539 1.8484 0.0082 8 6 5.4646 0.6000 0.0018 9 6 6.3322 -0.6323 0.0022 10 6 5.9543 -1.5124 1.1656 11 8 5.0673 -1.1727 1.9200 12 7 6.6019 -2.6769 1.3679 13 6 6.1890 -3.5387 2.3902 14 6 6.2578 -4.9178 2.2073 15 6 5.8524 -5.7797 3.2126 16 6 5.3769 -5.2821 4.4051 17 6 5.3016 -3.8909 4.6042 18 6 4.8139 -3.3724 5.8261 19 1 5.1076 -2.3846 6.1490 20 6 3.9508 -4.1392 6.6168 21 7 3.3568 -5.1882 6.1086 22 14 3.6468 -3.6651 8.3979 23 1 2.4188 -2.8349 8.4864 24 1 3.4740 -4.8933 9.2144 25 1 4.8061 -2.8902 8.9086 26 6 5.7189 -3.0199 3.5822 27 7 4.1513 0.4720 0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2192 3.6697 0.0005 34 1 5.6847 3.9676 0.0031 35 1 7.1296 1.9441 0.0135 36 1 7.3784 -0.3399 0.0926 37 1 6.1870 -1.1792 -0.9294 38 1 7.3515 -2.9196 0.8023 39 1 6.6305 -5.3175 1.2759 40 1 5.9102 -6.8475 3.0608 41 1 5.0615 -5.9582 5.1860 42 1 2.7582 -5.7196 6.6565 43 1 5.6690 -1.9507 3.7266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417869680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:36 Heat of formation + Delta-G solvation = -41.425983 kcal Electronic energy + Delta-G solvation = -26652.334938 eV Core-core repulsion = 22854.589759 eV Total energy + Delta-G solvation = -3797.745180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79051 -40.97210 -39.26051 -38.71170 -36.17422 -34.81461 -34.08911 -33.16944 -32.13752 -31.75277 -30.28226 -28.55302 -27.25857 -25.03426 -24.07138 -23.38989 -22.88330 -22.50363 -21.10884 -19.57921 -19.25836 -18.23131 -17.56260 -17.35766 -17.24754 -16.87933 -16.86166 -16.46914 -16.12363 -15.38581 -15.19545 -15.03688 -14.85142 -14.71813 -14.43492 -14.04506 -13.85811 -13.66107 -13.46127 -13.36787 -13.14186 -12.94512 -12.86326 -12.80396 -12.55592 -12.49640 -12.22308 -11.97072 -11.74803 -11.57203 -11.23542 -10.86171 -10.79878 -10.57788 -10.42919 -9.41542 -9.38202 -8.72075 -8.62354 -6.38662 0.14222 0.40827 0.90238 1.01285 1.32897 1.44579 1.49524 1.84664 2.07130 2.18041 2.27731 2.72236 2.87051 3.11457 3.73772 3.78357 3.96137 3.98226 4.04385 4.14646 4.20195 4.35155 4.38539 4.47497 4.49517 4.52923 4.64865 4.77197 4.80680 4.87332 5.02025 5.06534 5.12415 5.13380 5.13963 5.24205 5.27108 5.34183 5.56901 5.77436 5.88648 6.08002 6.12565 6.25773 6.35486 6.68004 6.72792 6.93204 6.97973 7.01351 7.44309 8.32477 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.003465 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.421527 B = 8077.866927 C = 9101.431167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 O -0.321 6.321 4 C 0.288 3.712 5 C -0.201 4.201 6 C -0.037 4.037 7 C -0.197 4.197 8 C 0.153 3.847 9 C -0.078 4.078 10 C 0.500 3.500 11 O -0.556 6.556 12 N -0.659 5.659 13 C 0.159 3.841 14 C -0.250 4.250 15 C -0.093 4.093 16 C -0.200 4.200 17 C 0.086 3.914 18 C -0.502 4.502 19 H 0.062 0.938 20 C 0.035 3.965 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.267 1.267 24 H -0.256 1.256 25 H -0.260 1.260 26 C -0.237 4.237 27 N -0.547 5.547 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.157 0.843 34 H 0.184 0.816 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.423 0.577 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.288 0.712 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 11.739 -15.292 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.005 4.005 3 O -0.229 6.229 4 C 0.109 3.891 5 C -0.221 4.221 6 C -0.062 4.062 7 C -0.217 4.217 8 C 0.016 3.984 9 C -0.117 4.117 10 C 0.288 3.712 11 O -0.432 6.432 12 N -0.306 5.306 13 C 0.065 3.935 14 C -0.271 4.271 15 C -0.112 4.112 16 C -0.220 4.220 17 C 0.083 3.917 18 C -0.532 4.532 19 H 0.080 0.920 20 C -0.179 4.179 21 N -0.452 5.452 22 Si 0.803 3.197 23 H -0.192 1.192 24 H -0.180 1.180 25 H -0.184 1.184 26 C -0.259 4.259 27 N -0.270 5.270 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.174 0.826 34 H 0.201 0.799 35 H 0.194 0.806 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.262 0.738 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.687 11.187 -14.764 18.887 hybrid contribution 0.010 0.295 0.844 0.894 sum 3.697 11.482 -13.920 18.419 Atomic orbital electron populations 1.21797 0.90629 1.03953 1.03644 1.22541 0.96441 0.80593 1.00907 1.86160 1.17600 1.30965 1.88167 1.20243 0.84077 0.90969 0.93777 1.21417 0.97480 0.94924 1.08300 1.21861 0.91273 1.01071 0.92038 1.22207 1.03321 0.91384 1.04760 1.20700 0.88252 0.95448 0.93994 1.20760 1.01644 0.91971 0.97362 1.21321 0.81280 0.81697 0.86862 1.90794 1.31976 1.72481 1.47956 1.43321 1.34789 1.19156 1.33320 1.17513 0.98886 0.89801 0.87253 1.20500 1.14815 0.90552 1.01252 1.20852 0.98026 0.98877 0.93441 1.21362 1.06759 0.95194 0.98722 1.17868 0.89141 0.92529 0.92184 1.19754 1.26435 1.02281 1.04716 0.92006 1.26734 0.92992 0.93742 1.04480 1.69870 1.21347 1.15351 1.38663 0.85204 0.79288 0.79231 0.76013 1.19153 1.18034 1.18372 1.21000 1.13287 0.97765 0.93823 1.66981 1.07450 1.34333 1.18285 0.91896 0.90138 0.89137 0.92078 0.94964 0.82575 0.79920 0.80601 0.82315 0.84528 0.73805 0.84897 0.85983 0.87610 0.90106 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 10.28 71.98 0.74 -2.61 16 2 C 0.07 2.23 6.03 71.98 0.43 2.66 16 3 O -0.32 -10.45 10.12 -89.97 -0.91 -11.36 16 4 C 0.29 9.23 7.49 84.79 0.63 9.87 16 5 C -0.20 -4.76 10.04 22.47 0.23 -4.53 16 6 C -0.04 -0.66 10.17 22.45 0.23 -0.43 16 7 C -0.20 -3.73 9.71 22.37 0.22 -3.51 16 8 C 0.15 4.09 5.76 42.50 0.24 4.33 16 9 C -0.08 -1.66 6.10 29.10 0.18 -1.48 16 10 C 0.50 17.62 7.60 87.66 0.67 18.29 16 11 O -0.56 -27.02 12.82 -3.05 -0.04 -27.06 16 12 N -0.66 -22.09 5.33 -303.65 -1.62 -23.71 16 13 C 0.16 7.23 6.28 38.10 0.24 7.47 16 14 C -0.25 -10.61 9.97 22.58 0.23 -10.39 16 15 C -0.09 -4.35 10.02 22.20 0.22 -4.13 16 16 C -0.20 -11.09 8.69 22.75 0.20 -10.89 16 17 C 0.09 5.07 5.58 -21.31 -0.12 4.95 16 18 C -0.50 -30.11 9.06 23.46 0.21 -29.89 16 19 H 0.06 3.69 7.89 -2.91 -0.02 3.67 16 20 C 0.03 1.89 5.19 85.25 0.44 2.33 16 21 N -0.83 -46.00 10.82 21.82 0.24 -45.77 16 22 Si 0.98 41.36 29.59 68.60 2.03 43.39 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 C -0.24 -13.18 8.43 22.85 0.19 -12.98 16 27 N -0.55 -18.67 8.08 -296.98 -2.40 -21.07 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.18 1.82 7.94 -2.91 -0.02 1.79 16 36 H 0.16 1.78 7.86 -2.39 -0.02 1.76 16 37 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.42 9.48 8.82 -92.71 -0.82 8.67 16 39 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.11 6.07 6.07 -2.91 -0.02 6.05 16 42 H 0.29 14.37 8.30 -92.71 -0.77 13.61 16 43 H 0.08 5.01 6.28 -2.91 -0.02 4.99 16 Total: -1.00 -84.31 368.63 2.70 -81.61 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.22 Total: 34.92 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 5.18 Total: -30.95 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -3.78 Total: -90.55 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.95 Total: -38.42 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -84.31 2.70 -81.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417869680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.181 kcal (2) G-P(sol) polarization free energy of solvation -84.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds