Wall clock time and date at job start Tue Mar 31 2020 14:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47477 * 2 1 4 4 C 1.50701 * 109.47181 * 239.99486 * 2 1 3 5 5 H 1.08005 * 120.00221 * 274.70186 * 4 2 1 6 6 C 1.37880 * 120.00088 * 94.70184 * 4 2 1 7 7 N 1.31513 * 120.00129 * 184.45714 * 6 4 2 8 8 Si 1.86798 * 119.99635 * 4.45631 * 6 4 2 9 9 H 1.48494 * 109.47549 * 94.37212 * 8 6 4 10 10 H 1.48509 * 109.46848 * 214.37090 * 8 6 4 11 11 H 1.48506 * 109.47259 * 334.36815 * 8 6 4 12 12 N 1.46504 * 109.47134 * 119.99939 * 2 1 3 13 13 C 1.46507 * 119.99937 * 59.99350 * 12 2 1 14 14 C 1.34777 * 119.99864 * 240.00315 * 12 2 1 15 15 O 1.21542 * 120.00002 * 354.82964 * 14 12 2 16 16 C 1.47833 * 119.99558 * 174.83577 * 14 12 2 17 17 C 1.39947 * 120.96600 * 309.83128 * 16 14 12 18 18 C 1.37972 * 119.07381 * 180.30029 * 17 16 14 19 19 N 1.31915 * 121.07700 * 359.67957 * 18 17 16 20 20 C 1.31629 * 122.14925 * 0.02686 * 19 18 17 21 21 C 1.38954 * 120.79090 * 359.97438 * 20 19 18 22 22 O 1.35649 * 120.58354 * 180.02562 * 21 20 19 23 23 C 1.35882 * 118.00328 * 265.88075 * 22 21 20 24 24 C 1.38753 * 120.06038 * 175.32199 * 23 22 21 25 25 C 1.38139 * 119.94509 * 180.29526 * 24 23 22 26 26 C 1.38279 * 120.05274 * 359.44627 * 25 24 23 27 27 C 1.38276 * 120.11597 * 0.55139 * 26 25 24 28 28 C 1.38129 * 120.05694 * 359.72629 * 27 26 25 29 29 H 1.09006 * 109.46955 * 64.84332 * 1 2 3 30 30 H 1.08994 * 109.47692 * 184.84224 * 1 2 3 31 31 H 1.09007 * 109.46990 * 304.84717 * 1 2 3 32 32 H 0.96995 * 119.99881 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47165 * 274.26010 * 13 12 2 34 34 H 1.08998 * 109.46525 * 34.26114 * 13 12 2 35 35 H 1.08994 * 109.46700 * 154.26071 * 13 12 2 36 36 H 1.07998 * 120.46396 * 0.02562 * 17 16 14 37 37 H 1.07990 * 119.46473 * 179.70440 * 18 17 16 38 38 H 1.08000 * 119.60273 * 179.97438 * 20 19 18 39 39 H 1.08007 * 120.02928 * 0.02562 * 24 23 22 40 40 H 1.08000 * 119.97368 * 179.69674 * 25 24 23 41 41 H 1.08001 * 119.94165 * 180.25548 * 26 25 24 42 42 H 1.08001 * 119.96675 * 179.74277 * 27 26 25 43 43 H 1.07998 * 120.03003 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1400 -1.7852 -1.2273 6 6 2.3544 0.0113 -2.3601 7 7 2.7088 -0.6142 -3.4614 8 14 2.2874 1.8778 -2.3265 9 1 3.6354 2.4160 -2.0131 10 1 1.8494 2.3814 -3.6531 11 1 1.3238 2.3199 -1.2865 12 7 2.0183 -0.6906 1.1962 13 6 1.6642 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.1643 1.0972 1.8460 16 6 3.1915 -0.6950 3.3451 17 6 2.2411 -1.3121 4.1664 18 6 2.6553 -1.9105 5.3385 19 7 3.9270 -1.9136 5.6890 20 6 4.8591 -1.3522 4.9484 21 6 4.5349 -0.7258 3.7512 22 8 5.4990 -0.1489 2.9909 23 6 5.7347 1.1787 3.1588 24 6 6.7748 1.7918 2.4752 25 6 7.0162 3.1404 2.6523 26 6 6.2150 3.8816 3.5014 27 6 5.1778 3.2730 4.1839 28 6 4.9358 1.9237 4.0146 29 1 -0.3633 0.4369 -0.9302 30 1 -0.3634 -1.0239 0.0867 31 1 -0.3633 0.5872 0.8434 32 1 2.9357 -0.1064 -4.2560 33 1 0.6997 -2.1458 1.9331 34 1 1.6034 -2.6152 0.4732 35 1 2.4263 -2.5621 2.0506 36 1 1.1974 -1.3160 3.8887 37 1 1.9266 -2.3843 5.9794 38 1 5.8881 -1.3787 5.2752 39 1 7.3980 1.2143 1.8083 40 1 7.8287 3.6171 2.1242 41 1 6.4028 4.9367 3.6354 42 1 4.5561 3.8534 4.8496 43 1 4.1258 1.4487 4.5482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537946513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:15 Heat of formation + Delta-G solvation = 16.360583 kcal Electronic energy + Delta-G solvation = -28215.810085 eV Core-core repulsion = 24420.570719 eV Total energy + Delta-G solvation = -3795.239366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37692 -39.53161 -38.80094 -37.50209 -35.53664 -33.25472 -32.23917 -31.29683 -30.67011 -30.16864 -29.47043 -26.45584 -25.39278 -24.77759 -24.10142 -22.51007 -22.05364 -21.23721 -19.08438 -18.58531 -17.61834 -17.15089 -16.89570 -16.58996 -15.98680 -15.81226 -15.10957 -14.69338 -14.51838 -14.29878 -14.03358 -14.00311 -13.82078 -13.38292 -13.30521 -13.11886 -12.73797 -12.54632 -12.41586 -12.14809 -11.93067 -11.65576 -11.53982 -11.44873 -11.12977 -10.92879 -10.81255 -10.53926 -10.07413 -9.91254 -9.76220 -9.35823 -9.22737 -9.12641 -8.82959 -8.64554 -8.12089 -7.80978 -6.21212 -4.23836 0.60100 0.77438 1.49138 1.55911 2.98634 3.12182 3.26842 3.35685 3.42320 3.49965 3.72191 3.91251 4.22687 4.34404 4.57415 4.60535 4.78653 4.91165 4.98161 5.03097 5.18443 5.22002 5.35632 5.47582 5.55587 5.58951 5.61396 5.74867 5.81684 5.82872 6.09023 6.17098 6.23577 6.25952 6.32551 6.40848 6.49328 6.50837 6.62324 6.83819 6.91859 6.96983 7.35407 7.52211 7.55308 7.66846 7.97861 8.39250 8.69465 8.80382 9.40688 10.90534 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.005680 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.570504 B = 4928.653889 C = 6727.576555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.221 3.779 3 H 0.068 0.932 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.576 5.576 13 C 0.079 3.921 14 C 0.544 3.456 15 O -0.526 6.526 16 C -0.079 4.079 17 C -0.132 4.132 18 C 0.094 3.906 19 N -0.461 5.461 20 C 0.098 3.902 21 C 0.075 3.925 22 O -0.249 6.249 23 C 0.141 3.859 24 C -0.141 4.141 25 C -0.087 4.087 26 C -0.155 4.155 27 C -0.085 4.085 28 C -0.167 4.167 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.267 0.733 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 1.248 17.674 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.121 3.879 3 H 0.086 0.914 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.306 5.306 13 C -0.064 4.064 14 C 0.329 3.671 15 O -0.404 6.404 16 C -0.091 4.091 17 C -0.152 4.152 18 C -0.062 4.062 19 N -0.171 5.171 20 C -0.061 4.061 21 C 0.029 3.971 22 O -0.160 6.160 23 C 0.099 3.901 24 C -0.160 4.160 25 C -0.105 4.105 26 C -0.173 4.173 27 C -0.103 4.103 28 C -0.186 4.186 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.773 1.360 17.916 18.180 hybrid contribution -0.513 1.136 -1.001 1.598 sum 2.260 2.496 16.915 17.247 Atomic orbital electron populations 1.22215 0.98064 1.00334 0.99828 1.19463 0.90813 0.95159 0.82446 0.91376 1.21070 1.44982 0.95700 0.94639 0.90355 1.24939 0.93643 0.98479 0.95214 1.69885 1.44829 1.36062 1.01770 0.86899 0.79703 0.86159 0.77283 1.19795 1.21184 1.18531 1.48299 1.48154 1.11607 1.22561 1.21751 0.98805 0.83032 1.02847 1.17983 0.79928 0.86326 0.82851 1.90805 1.54403 1.18397 1.76764 1.21205 0.93282 0.97364 0.97226 1.22403 1.00898 0.96858 0.95071 1.22777 0.92733 0.96202 0.94458 1.67610 1.01656 1.15817 1.32054 1.23078 1.00028 0.94481 0.88480 1.19760 0.87004 0.98109 0.92260 1.84265 1.51625 1.21336 1.58751 1.18985 0.94670 0.81101 0.95350 1.20390 0.98361 0.95164 1.02079 1.20884 0.99231 0.92738 0.97620 1.21009 0.97167 0.99815 0.99333 1.20844 0.96973 0.93720 0.98768 1.21043 1.00269 0.95487 1.01809 0.92181 0.93252 0.95582 0.92338 0.93450 0.89687 0.92567 0.83428 0.81642 0.81561 0.85171 0.85438 0.86131 0.86122 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.25 37.16 0.34 -2.62 16 2 C 0.22 5.24 2.25 -69.08 -0.16 5.09 16 3 H 0.07 1.79 3.88 -51.93 -0.20 1.59 16 4 C -0.53 -14.34 8.75 -34.44 -0.30 -14.64 16 5 H 0.08 2.26 6.77 -52.48 -0.36 1.91 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 8 Si 0.87 22.17 27.28 -169.99 -4.64 17.53 16 9 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.40 6.41 56.52 0.36 -6.03 16 12 N -0.58 -11.84 2.75 -176.38 -0.49 -12.33 16 13 C 0.08 1.29 8.17 59.85 0.49 1.78 16 14 C 0.54 11.17 6.97 -12.33 -0.09 11.08 16 15 O -0.53 -12.58 13.81 1.44 0.02 -12.56 16 16 C -0.08 -1.28 4.06 -104.53 -0.42 -1.70 16 17 C -0.13 -1.60 8.10 -39.04 -0.32 -1.91 16 18 C 0.09 0.98 11.16 -17.61 -0.20 0.79 16 19 N -0.46 -5.62 10.32 -13.17 -0.14 -5.76 16 20 C 0.10 1.26 11.14 -17.37 -0.19 1.07 16 21 C 0.07 1.17 4.22 -38.51 -0.16 1.01 16 22 O -0.25 -4.44 9.48 -6.67 -0.06 -4.50 16 23 C 0.14 2.43 5.48 -39.20 -0.21 2.21 16 24 C -0.14 -2.23 9.99 -39.43 -0.39 -2.63 16 25 C -0.09 -1.18 10.04 -39.60 -0.40 -1.58 16 26 C -0.16 -2.04 10.04 -39.55 -0.40 -2.43 16 27 C -0.08 -1.20 10.04 -39.61 -0.40 -1.59 16 28 C -0.17 -2.69 7.99 -39.43 -0.32 -3.01 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 0.91 7.51 -51.93 -0.39 0.52 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.05 0.62 7.62 -51.93 -0.40 0.22 16 34 H 0.08 1.51 6.54 -51.93 -0.34 1.18 16 35 H 0.06 0.83 6.30 -51.93 -0.33 0.50 16 36 H 0.15 1.51 7.15 -52.49 -0.38 1.14 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.86 6.46 -52.49 -0.34 1.52 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -33.84 356.52 -7.65 -41.49 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.28 Total: 3.47 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.22 Total: -6.87 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.15 Total: -43.94 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.04 Total: -17.06 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.64 Total: 17.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.84 -7.65 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537946513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.855 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds