Wall clock time and date at job start Tue Mar 31 2020 14:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47477 * 2 1 4 4 C 1.50701 * 109.47181 * 239.99486 * 2 1 3 5 5 H 1.08005 * 120.00221 * 274.70186 * 4 2 1 6 6 C 1.37880 * 120.00088 * 94.70184 * 4 2 1 7 7 N 1.31513 * 120.00129 * 184.45714 * 6 4 2 8 8 Si 1.86798 * 119.99635 * 4.45631 * 6 4 2 9 9 H 1.48494 * 109.47549 * 94.37212 * 8 6 4 10 10 H 1.48509 * 109.46848 * 214.37090 * 8 6 4 11 11 H 1.48506 * 109.47259 * 334.36815 * 8 6 4 12 12 N 1.46504 * 109.47134 * 119.99939 * 2 1 3 13 13 C 1.46507 * 119.99937 * 59.99350 * 12 2 1 14 14 C 1.34777 * 119.99864 * 240.00315 * 12 2 1 15 15 O 1.21542 * 120.00002 * 354.82964 * 14 12 2 16 16 C 1.47833 * 119.99558 * 174.83577 * 14 12 2 17 17 C 1.39947 * 120.96600 * 309.83128 * 16 14 12 18 18 C 1.37972 * 119.07381 * 180.30029 * 17 16 14 19 19 N 1.31915 * 121.07700 * 359.67957 * 18 17 16 20 20 C 1.31629 * 122.14925 * 0.02686 * 19 18 17 21 21 C 1.38954 * 120.79090 * 359.97438 * 20 19 18 22 22 O 1.35649 * 120.58354 * 180.02562 * 21 20 19 23 23 C 1.35882 * 118.00328 * 265.88075 * 22 21 20 24 24 C 1.38753 * 120.06038 * 175.32199 * 23 22 21 25 25 C 1.38139 * 119.94509 * 180.29526 * 24 23 22 26 26 C 1.38279 * 120.05274 * 359.44627 * 25 24 23 27 27 C 1.38276 * 120.11597 * 0.55139 * 26 25 24 28 28 C 1.38129 * 120.05694 * 359.72629 * 27 26 25 29 29 H 1.09006 * 109.46955 * 64.84332 * 1 2 3 30 30 H 1.08994 * 109.47692 * 184.84224 * 1 2 3 31 31 H 1.09007 * 109.46990 * 304.84717 * 1 2 3 32 32 H 0.96995 * 119.99881 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47165 * 274.26010 * 13 12 2 34 34 H 1.08998 * 109.46525 * 34.26114 * 13 12 2 35 35 H 1.08994 * 109.46700 * 154.26071 * 13 12 2 36 36 H 1.07998 * 120.46396 * 0.02562 * 17 16 14 37 37 H 1.07990 * 119.46473 * 179.70440 * 18 17 16 38 38 H 1.08000 * 119.60273 * 179.97438 * 20 19 18 39 39 H 1.08007 * 120.02928 * 0.02562 * 24 23 22 40 40 H 1.08000 * 119.97368 * 179.69674 * 25 24 23 41 41 H 1.08001 * 119.94165 * 180.25548 * 26 25 24 42 42 H 1.08001 * 119.96675 * 179.74277 * 27 26 25 43 43 H 1.07998 * 120.03003 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1400 -1.7852 -1.2273 6 6 2.3544 0.0113 -2.3601 7 7 2.7088 -0.6142 -3.4614 8 14 2.2874 1.8778 -2.3265 9 1 3.6354 2.4160 -2.0131 10 1 1.8494 2.3814 -3.6531 11 1 1.3238 2.3199 -1.2865 12 7 2.0183 -0.6906 1.1962 13 6 1.6642 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.1643 1.0972 1.8460 16 6 3.1915 -0.6950 3.3451 17 6 2.2411 -1.3121 4.1664 18 6 2.6553 -1.9105 5.3385 19 7 3.9270 -1.9136 5.6890 20 6 4.8591 -1.3522 4.9484 21 6 4.5349 -0.7258 3.7512 22 8 5.4990 -0.1489 2.9909 23 6 5.7347 1.1787 3.1588 24 6 6.7748 1.7918 2.4752 25 6 7.0162 3.1404 2.6523 26 6 6.2150 3.8816 3.5014 27 6 5.1778 3.2730 4.1839 28 6 4.9358 1.9237 4.0146 29 1 -0.3633 0.4369 -0.9302 30 1 -0.3634 -1.0239 0.0867 31 1 -0.3633 0.5872 0.8434 32 1 2.9357 -0.1064 -4.2560 33 1 0.6997 -2.1458 1.9331 34 1 1.6034 -2.6152 0.4732 35 1 2.4263 -2.5621 2.0506 36 1 1.1974 -1.3160 3.8887 37 1 1.9266 -2.3843 5.9794 38 1 5.8881 -1.3787 5.2752 39 1 7.3980 1.2143 1.8083 40 1 7.8287 3.6171 2.1242 41 1 6.4028 4.9367 3.6354 42 1 4.5561 3.8534 4.8496 43 1 4.1258 1.4487 4.5482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537946513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:15 Heat of formation + Delta-G solvation = -4.936889 kcal Electronic energy + Delta-G solvation = -28216.733613 eV Core-core repulsion = 24420.570719 eV Total energy + Delta-G solvation = -3796.162894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52300 -40.77858 -40.13736 -38.60495 -37.24117 -34.95280 -33.81379 -32.35700 -31.84702 -31.70484 -30.56981 -27.87075 -27.33445 -26.07034 -25.13383 -23.62336 -23.32326 -22.61014 -20.60804 -19.73648 -19.36957 -18.49162 -18.24600 -17.81044 -17.59956 -16.93385 -16.58307 -15.97854 -15.78850 -15.66149 -15.34351 -15.11300 -15.01489 -14.82424 -14.46379 -14.42932 -14.35547 -14.24875 -14.00526 -13.39526 -13.30057 -13.14190 -12.99823 -12.73153 -12.69861 -12.57820 -12.38017 -12.01021 -11.83155 -11.38137 -11.25784 -10.97772 -10.82234 -10.54365 -10.16847 -9.96018 -9.45905 -9.25989 -8.41672 -6.45469 -0.48192 -0.21438 0.37049 0.43983 1.20976 1.28979 1.36827 1.59231 1.96387 2.13834 2.22877 2.61861 2.79733 2.98323 3.31410 3.36655 3.56979 3.78501 3.86722 3.90528 4.02163 4.20763 4.26196 4.38448 4.39852 4.45004 4.51136 4.58125 4.62475 4.71601 4.73925 4.76617 4.84714 4.90424 5.00990 5.10475 5.27111 5.29682 5.35058 5.42551 5.49358 5.52837 5.71700 5.87211 6.07785 6.40353 6.57367 6.59964 6.69144 7.10674 7.23592 8.73829 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.005680 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.570504 B = 4928.653889 C = 6727.576555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.222 3.778 3 H 0.042 0.958 4 C -0.520 4.520 5 H 0.052 0.948 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.924 3.076 9 H -0.290 1.290 10 H -0.272 1.272 11 H -0.247 1.247 12 N -0.585 5.585 13 C 0.078 3.922 14 C 0.539 3.461 15 O -0.570 6.570 16 C -0.100 4.100 17 C -0.120 4.120 18 C 0.113 3.887 19 N -0.463 5.463 20 C 0.104 3.896 21 C 0.052 3.948 22 O -0.274 6.274 23 C 0.116 3.884 24 C -0.170 4.170 25 C -0.088 4.088 26 C -0.155 4.155 27 C -0.092 4.092 28 C -0.181 4.181 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.268 0.732 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.173 0.827 37 H 0.214 0.786 38 H 0.183 0.817 39 H 0.128 0.872 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 1.607 20.619 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.120 3.880 3 H 0.060 0.940 4 C -0.559 4.559 5 H 0.070 0.930 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.749 3.251 9 H -0.217 1.217 10 H -0.197 1.197 11 H -0.171 1.171 12 N -0.315 5.315 13 C -0.064 4.064 14 C 0.326 3.674 15 O -0.450 6.450 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.043 4.043 19 N -0.173 5.173 20 C -0.054 4.054 21 C 0.006 3.994 22 O -0.186 6.186 23 C 0.074 3.926 24 C -0.188 4.188 25 C -0.106 4.106 26 C -0.172 4.172 27 C -0.110 4.110 28 C -0.199 4.199 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.190 0.810 37 H 0.230 0.770 38 H 0.200 0.800 39 H 0.146 0.854 40 H 0.174 0.826 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.260 1.691 20.887 20.993 hybrid contribution -0.036 0.934 -1.802 2.030 sum 1.224 2.625 19.085 19.303 Atomic orbital electron populations 1.22057 0.95059 1.02007 1.00447 1.19242 0.92971 0.93502 0.82288 0.94017 1.21344 1.43748 0.94731 0.96060 0.92967 1.25607 0.94057 1.02123 0.95184 1.69986 1.47175 1.37496 1.02550 0.86091 0.78953 0.81941 0.78109 1.21660 1.19741 1.17090 1.48205 1.48425 1.13152 1.21688 1.21943 1.01504 0.80429 1.02486 1.18582 0.78760 0.85976 0.84062 1.90764 1.55655 1.20468 1.78092 1.20952 0.94470 0.99507 0.96233 1.22690 1.01184 0.95506 0.94643 1.23514 0.92742 0.94244 0.93833 1.67742 1.02395 1.15507 1.31693 1.23260 1.01106 0.93616 0.87371 1.20049 0.86730 0.99233 0.93387 1.84217 1.52568 1.21914 1.59864 1.19306 0.95609 0.81287 0.96371 1.20688 0.98835 0.96520 1.02788 1.21290 0.99900 0.91881 0.97480 1.21441 0.96219 1.01382 0.98202 1.21247 0.97501 0.93199 0.99048 1.21114 1.00279 0.96406 1.02132 0.93010 0.91354 0.93203 0.92241 0.89159 0.91836 0.91051 0.80989 0.76969 0.80042 0.85407 0.82616 0.82766 0.83658 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 9.25 71.98 0.67 -4.67 16 2 C 0.22 10.50 2.25 44.24 0.10 10.60 16 3 H 0.04 2.21 3.88 -2.39 -0.01 2.20 16 4 C -0.52 -29.09 8.75 25.60 0.22 -28.87 16 5 H 0.05 3.13 6.77 -2.91 -0.02 3.11 16 6 C 0.03 1.76 5.47 84.66 0.46 2.22 16 7 N -0.93 -57.72 13.96 21.45 0.30 -57.42 16 8 Si 0.92 46.82 27.28 68.60 1.87 48.69 16 9 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 10 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.25 -11.85 6.41 99.48 0.64 -11.21 16 12 N -0.58 -23.75 2.75 -830.23 -2.29 -26.04 16 13 C 0.08 2.42 8.17 127.77 1.04 3.46 16 14 C 0.54 22.17 6.97 86.78 0.60 22.77 16 15 O -0.57 -27.94 13.81 -0.14 0.00 -27.94 16 16 C -0.10 -3.14 4.06 -19.80 -0.08 -3.22 16 17 C -0.12 -2.50 8.10 22.62 0.18 -2.32 16 18 C 0.11 1.86 11.16 84.62 0.94 2.81 16 19 N -0.46 -9.87 10.32 -195.57 -2.02 -11.89 16 20 C 0.10 2.56 11.14 84.89 0.95 3.50 16 21 C 0.05 1.62 4.22 22.96 0.10 1.72 16 22 O -0.27 -10.25 9.48 -29.16 -0.28 -10.53 16 23 C 0.12 4.16 5.48 22.52 0.12 4.28 16 24 C -0.17 -5.58 9.99 22.37 0.22 -5.36 16 25 C -0.09 -2.34 10.04 22.26 0.22 -2.12 16 26 C -0.15 -3.81 10.04 22.29 0.22 -3.59 16 27 C -0.09 -2.51 10.04 22.25 0.22 -2.29 16 28 C -0.18 -5.88 7.99 22.37 0.18 -5.70 16 29 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.07 2.36 7.51 -2.39 -0.02 2.34 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.09 2.00 7.62 -2.39 -0.02 1.98 16 34 H 0.06 2.24 6.54 -2.39 -0.02 2.22 16 35 H 0.07 1.97 6.30 -2.39 -0.02 1.96 16 36 H 0.17 2.69 7.15 -2.91 -0.02 2.67 16 37 H 0.21 1.53 8.06 -2.92 -0.02 1.50 16 38 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.11 3.62 6.46 -2.91 -0.02 3.60 16 Total: -1.00 -78.38 356.52 4.94 -73.44 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.97 Total: 18.46 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 6.39 Total: -6.77 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -4.01 Total: -95.35 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.28 Total: -38.47 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.87 Total: 48.69 kcal Total: -78.38 4.94 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537946513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.500 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds