Wall clock time and date at job start Tue Mar 31 2020 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99752 * 2 1 4 4 O 1.45195 * 109.46920 * 135.00207 * 3 2 1 5 5 C 1.34834 * 117.00392 * 179.97438 * 4 3 2 6 6 O 1.21582 * 119.99710 * 359.97438 * 5 4 3 7 7 C 1.46915 * 120.00481 * 179.97438 * 5 4 3 8 8 C 1.43203 * 120.00273 * 359.97438 * 7 5 4 9 9 N 5.45966 * 140.08480 * 85.62903 * 2 1 3 10 10 C 1.37966 * 120.00049 * 179.97438 * 7 5 4 11 11 C 1.46299 * 120.00011 * 172.02556 * 10 7 5 12 12 C 1.40333 * 120.11538 * 326.15386 * 11 10 7 13 13 C 1.36485 * 119.88343 * 179.76135 * 12 11 10 14 14 C 1.39371 * 120.11736 * 0.51864 * 13 12 11 15 15 N 1.38889 * 119.88594 * 179.75908 * 14 13 12 16 16 C 1.46501 * 120.00051 * 179.97438 * 15 14 13 17 17 C 1.46502 * 120.00015 * 359.97393 * 15 14 13 18 18 C 1.50699 * 109.46677 * 90.00314 * 17 15 14 19 19 H 1.08005 * 120.00667 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00052 * 180.02562 * 18 17 15 21 21 N 1.31520 * 120.00168 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99893 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46993 * 90.00065 * 22 20 18 24 24 H 1.48496 * 109.47171 * 209.99938 * 22 20 18 25 25 H 1.48496 * 109.47076 * 330.00595 * 22 20 18 26 26 C 1.39363 * 120.23035 * 359.73766 * 14 13 12 27 27 C 1.36499 * 120.11661 * 0.02562 * 26 14 13 28 28 H 1.07990 * 120.00164 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99806 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00051 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47283 * 15.00081 * 3 2 1 32 32 H 1.08999 * 109.46928 * 254.99468 * 3 2 1 33 33 H 1.07996 * 120.00246 * 352.30415 * 10 7 5 34 34 H 1.08005 * 120.05939 * 0.02584 * 12 11 10 35 35 H 1.08004 * 119.94577 * 180.27537 * 13 12 11 36 36 H 1.08995 * 109.47199 * 89.99736 * 16 15 14 37 37 H 1.09006 * 109.46813 * 210.00281 * 16 15 14 38 38 H 1.09003 * 109.46678 * 329.99332 * 16 15 14 39 39 H 1.09001 * 109.47166 * 209.99878 * 17 15 14 40 40 H 1.08991 * 109.47136 * 330.00522 * 17 15 14 41 41 H 0.96994 * 119.99735 * 180.02562 * 21 20 18 42 42 H 1.07999 * 119.94487 * 179.97438 * 26 14 13 43 43 H 1.07997 * 120.05725 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1438 1.2403 0.9679 5 6 3.9207 2.3353 1.0926 6 8 3.7011 3.3173 0.4102 7 6 5.0325 2.3418 2.0529 8 6 5.2909 1.1854 2.8571 9 7 5.4976 0.2670 3.4930 10 6 5.8278 3.4620 2.1800 11 6 6.8207 3.5365 3.2519 12 6 6.5618 2.9376 4.4943 13 6 7.4934 3.0058 5.4894 14 6 8.6957 3.6780 5.2769 15 7 9.6383 3.7487 6.2945 16 6 10.9031 4.4541 6.0737 17 6 9.3677 3.1178 7.5888 18 6 9.8664 1.6959 7.5684 19 1 10.3382 1.3016 6.6804 20 6 9.7205 0.8981 8.6834 21 7 10.1562 -0.3427 8.6659 22 14 8.9052 1.5800 10.2196 23 1 7.4426 1.3308 10.1559 24 1 9.4697 0.9101 11.4185 25 1 9.1550 3.0413 10.3053 26 6 8.9556 4.2791 4.0467 27 6 8.0325 4.2126 3.0433 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3855 2.1161 0.2660 32 1 2.4756 1.4868 -0.9926 33 1 5.7142 4.2858 1.4910 34 1 5.6287 2.4200 4.6614 35 1 7.2971 2.5414 6.4445 36 1 10.7890 5.5011 6.3545 37 1 11.6845 3.9979 6.6815 38 1 11.1769 4.3881 5.0207 39 1 9.8790 3.6709 8.3766 40 1 8.2944 3.1237 7.7785 41 1 10.0532 -0.9040 9.4502 42 1 9.8886 4.7991 3.8872 43 1 8.2351 4.6784 2.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007208484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:23 Heat of formation + Delta-G solvation = 25.623862 kcal Electronic energy + Delta-G solvation = -25719.271626 eV Core-core repulsion = 21924.433946 eV Total energy + Delta-G solvation = -3794.837680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53972 -39.51870 -37.34539 -36.70387 -35.85477 -34.27633 -33.41053 -32.63265 -31.08249 -29.61638 -28.54027 -27.21683 -25.85018 -23.96842 -22.52898 -22.12460 -21.22205 -20.43094 -20.13830 -18.69321 -17.24160 -17.09969 -16.95458 -16.60027 -15.89175 -15.39409 -15.14432 -14.76558 -14.45690 -14.27527 -13.90105 -13.79057 -13.53728 -13.35913 -13.33432 -13.14091 -12.81107 -12.62574 -12.51055 -12.31594 -12.22477 -11.85247 -11.65573 -11.53434 -11.50422 -11.21725 -11.08899 -10.78491 -10.70956 -10.50969 -10.35497 -9.99876 -9.84210 -9.63456 -8.86330 -8.80452 -8.75614 -6.71433 -6.24991 -4.27530 0.26636 1.63944 1.81438 1.96314 2.42579 2.59979 3.07570 3.14456 3.20479 3.23067 3.64086 3.70386 4.05056 4.16414 4.22301 4.41134 4.68829 4.70691 4.92044 5.00237 5.04550 5.07058 5.10846 5.18006 5.42514 5.44892 5.52703 5.60771 5.72511 5.73489 5.89225 6.01181 6.09997 6.15653 6.16739 6.17797 6.26400 6.45340 6.50807 6.63799 6.71597 6.84233 7.09954 7.36731 7.54392 7.67677 7.83174 7.94759 8.32741 8.80324 9.32613 10.87743 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.002663 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.223157 B =10510.826061 C =11937.148479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C 0.096 3.904 4 O -0.348 6.348 5 C 0.530 3.470 6 O -0.514 6.514 7 C -0.161 4.161 8 C 0.257 3.743 9 N -0.409 5.409 10 C 0.125 3.875 11 C -0.217 4.217 12 C -0.024 4.024 13 C -0.196 4.196 14 C 0.277 3.723 15 N -0.588 5.588 16 C 0.088 3.912 17 C 0.213 3.787 18 C -0.543 4.543 19 H 0.078 0.922 20 C 0.076 3.924 21 N -0.888 5.888 22 Si 0.872 3.128 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.265 1.265 26 C -0.229 4.229 27 C -0.016 4.016 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.267 0.733 42 H 0.126 0.874 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 9.990 -15.274 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.022 3.978 4 O -0.265 6.265 5 C 0.376 3.624 6 O -0.404 6.404 7 C -0.166 4.166 8 C -0.058 4.058 9 N -0.085 5.085 10 C 0.103 3.897 11 C -0.220 4.220 12 C -0.043 4.043 13 C -0.218 4.218 14 C 0.164 3.836 15 N -0.287 5.287 16 C -0.055 4.055 17 C 0.092 3.908 18 C -0.581 4.581 19 H 0.096 0.904 20 C -0.128 4.128 21 N -0.525 5.525 22 Si 0.698 3.302 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.190 1.190 26 C -0.252 4.252 27 C -0.035 4.035 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.173 0.827 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.011 8.664 -14.157 19.918 hybrid contribution -0.493 0.380 0.570 0.844 sum -11.504 9.044 -13.587 19.968 Atomic orbital electron populations 1.23893 0.95386 1.02615 0.98898 1.22720 0.95728 0.97886 1.01205 1.22067 0.87029 0.96792 0.91881 1.86657 1.41742 1.40162 1.57942 1.20399 0.80834 0.80540 0.80578 1.90869 1.70505 1.34487 1.44570 1.16969 1.03196 0.92712 1.03755 1.25092 0.94469 0.92901 0.93317 1.81330 1.07290 1.10620 1.09286 1.23140 0.84378 0.92236 0.89962 1.18467 0.97411 1.11393 0.94733 1.20975 0.98249 0.93159 0.91950 1.20575 0.93762 1.05666 1.01784 1.18293 0.88409 0.89250 0.87639 1.46924 1.15248 1.53649 1.12883 1.21690 0.86315 0.95606 1.01892 1.19856 0.96984 0.94192 0.79726 1.21348 1.40724 0.94468 1.01538 0.90431 1.24888 0.94856 0.94629 0.98420 1.69887 1.45654 1.06809 1.30168 0.86925 0.80419 0.79623 0.83234 1.19727 1.20739 1.19003 1.20353 1.02042 1.09629 0.93192 1.20682 0.91664 0.93434 0.97716 0.87385 0.88158 0.86099 0.90448 0.89963 0.82741 0.86356 0.84570 0.93557 0.90559 0.91750 0.94794 0.95048 0.92264 0.85666 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 14.31 29.01 0.42 -0.72 16 2 C -0.16 -1.29 9.91 -36.02 -0.36 -1.65 16 3 C 0.10 0.90 5.89 36.01 0.21 1.11 16 4 O -0.35 -4.35 9.74 -40.86 -0.40 -4.74 16 5 C 0.53 6.74 7.87 34.24 0.27 7.01 16 6 O -0.51 -6.85 16.10 -19.33 -0.31 -7.16 16 7 C -0.16 -2.08 5.81 -104.56 -0.61 -2.68 16 8 C 0.26 4.09 11.38 -22.47 -0.26 3.84 16 9 N -0.41 -7.68 18.23 41.84 0.76 -6.92 16 10 C 0.13 1.40 9.43 -36.44 -0.34 1.06 16 11 C -0.22 -2.94 5.51 -105.08 -0.58 -3.51 16 12 C -0.02 -0.38 8.25 -39.43 -0.33 -0.71 16 13 C -0.20 -3.63 9.13 -39.79 -0.36 -4.00 16 14 C 0.28 4.91 6.55 -83.82 -0.55 4.36 16 15 N -0.59 -11.03 2.97 -180.96 -0.54 -11.57 16 16 C 0.09 1.30 10.17 59.85 0.61 1.91 16 17 C 0.21 4.68 3.96 -5.19 -0.02 4.66 16 18 C -0.54 -14.51 9.94 -34.44 -0.34 -14.85 16 19 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 20 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 21 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 22 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.27 -5.75 6.54 56.52 0.37 -5.38 16 26 C -0.23 -3.28 9.13 -39.79 -0.36 -3.64 16 27 C -0.02 -0.20 9.75 -39.42 -0.38 -0.58 16 28 H 0.11 0.58 8.06 -52.49 -0.42 0.15 16 29 H 0.10 0.56 7.90 -52.48 -0.41 0.15 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.16 1.28 7.61 -52.49 -0.40 0.88 16 34 H 0.12 1.91 5.97 -52.48 -0.31 1.60 16 35 H 0.14 2.79 6.11 -52.48 -0.32 2.46 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.06 0.82 6.16 -51.93 -0.32 0.50 16 39 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 40 H 0.03 0.69 5.59 -51.93 -0.29 0.40 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.13 1.52 6.11 -52.49 -0.32 1.20 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -32.16 377.01 -7.06 -39.22 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.28 Total: 2.07 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.08 Total: -6.40 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 1.00 Total: -44.17 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.71 Total: -11.91 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.16 -7.06 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007208484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.847 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds