Wall clock time and date at job start Tue Mar 31 2020 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99752 * 2 1 4 4 O 1.45195 * 109.46920 * 135.00207 * 3 2 1 5 5 C 1.34834 * 117.00392 * 179.97438 * 4 3 2 6 6 O 1.21582 * 119.99710 * 359.97438 * 5 4 3 7 7 C 1.46915 * 120.00481 * 179.97438 * 5 4 3 8 8 C 1.43203 * 120.00273 * 359.97438 * 7 5 4 9 9 N 5.45966 * 140.08480 * 85.62903 * 2 1 3 10 10 C 1.37966 * 120.00049 * 179.97438 * 7 5 4 11 11 C 1.46299 * 120.00011 * 172.02556 * 10 7 5 12 12 C 1.40333 * 120.11538 * 326.15386 * 11 10 7 13 13 C 1.36485 * 119.88343 * 179.76135 * 12 11 10 14 14 C 1.39371 * 120.11736 * 0.51864 * 13 12 11 15 15 N 1.38889 * 119.88594 * 179.75908 * 14 13 12 16 16 C 1.46501 * 120.00051 * 179.97438 * 15 14 13 17 17 C 1.46502 * 120.00015 * 359.97393 * 15 14 13 18 18 C 1.50699 * 109.46677 * 90.00314 * 17 15 14 19 19 H 1.08005 * 120.00667 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00052 * 180.02562 * 18 17 15 21 21 N 1.31520 * 120.00168 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99893 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46993 * 90.00065 * 22 20 18 24 24 H 1.48496 * 109.47171 * 209.99938 * 22 20 18 25 25 H 1.48496 * 109.47076 * 330.00595 * 22 20 18 26 26 C 1.39363 * 120.23035 * 359.73766 * 14 13 12 27 27 C 1.36499 * 120.11661 * 0.02562 * 26 14 13 28 28 H 1.07990 * 120.00164 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99806 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00051 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47283 * 15.00081 * 3 2 1 32 32 H 1.08999 * 109.46928 * 254.99468 * 3 2 1 33 33 H 1.07996 * 120.00246 * 352.30415 * 10 7 5 34 34 H 1.08005 * 120.05939 * 0.02584 * 12 11 10 35 35 H 1.08004 * 119.94577 * 180.27537 * 13 12 11 36 36 H 1.08995 * 109.47199 * 89.99736 * 16 15 14 37 37 H 1.09006 * 109.46813 * 210.00281 * 16 15 14 38 38 H 1.09003 * 109.46678 * 329.99332 * 16 15 14 39 39 H 1.09001 * 109.47166 * 209.99878 * 17 15 14 40 40 H 1.08991 * 109.47136 * 330.00522 * 17 15 14 41 41 H 0.96994 * 119.99735 * 180.02562 * 21 20 18 42 42 H 1.07999 * 119.94487 * 179.97438 * 26 14 13 43 43 H 1.07997 * 120.05725 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1438 1.2403 0.9679 5 6 3.9207 2.3353 1.0926 6 8 3.7011 3.3173 0.4102 7 6 5.0325 2.3418 2.0529 8 6 5.2909 1.1854 2.8571 9 7 5.4976 0.2670 3.4930 10 6 5.8278 3.4620 2.1800 11 6 6.8207 3.5365 3.2519 12 6 6.5618 2.9376 4.4943 13 6 7.4934 3.0058 5.4894 14 6 8.6957 3.6780 5.2769 15 7 9.6383 3.7487 6.2945 16 6 10.9031 4.4541 6.0737 17 6 9.3677 3.1178 7.5888 18 6 9.8664 1.6959 7.5684 19 1 10.3382 1.3016 6.6804 20 6 9.7205 0.8981 8.6834 21 7 10.1562 -0.3427 8.6659 22 14 8.9052 1.5800 10.2196 23 1 7.4426 1.3308 10.1559 24 1 9.4697 0.9101 11.4185 25 1 9.1550 3.0413 10.3053 26 6 8.9556 4.2791 4.0467 27 6 8.0325 4.2126 3.0433 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3855 2.1161 0.2660 32 1 2.4756 1.4868 -0.9926 33 1 5.7142 4.2858 1.4910 34 1 5.6287 2.4200 4.6614 35 1 7.2971 2.5414 6.4445 36 1 10.7890 5.5011 6.3545 37 1 11.6845 3.9979 6.6815 38 1 11.1769 4.3881 5.0207 39 1 9.8790 3.6709 8.3766 40 1 8.2944 3.1237 7.7785 41 1 10.0532 -0.9040 9.4502 42 1 9.8886 4.7991 3.8872 43 1 8.2351 4.6784 2.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007208484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:23 Heat of formation + Delta-G solvation = 7.753806 kcal Electronic energy + Delta-G solvation = -25720.046530 eV Core-core repulsion = 21924.433946 eV Total energy + Delta-G solvation = -3795.612584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50950 -40.73405 -38.53228 -37.72151 -37.20892 -34.98320 -34.93516 -34.25888 -32.34173 -30.98525 -30.02858 -28.06190 -27.06011 -25.36826 -23.84564 -23.34482 -22.42327 -21.45587 -21.04883 -19.71564 -19.16440 -18.29150 -18.08697 -17.51183 -17.11386 -16.73633 -16.18958 -15.95389 -15.89856 -15.38668 -15.28808 -14.87172 -14.79322 -14.62153 -14.47352 -14.34412 -14.06685 -13.79556 -13.65051 -13.52697 -13.47275 -13.42568 -13.18576 -12.71957 -12.63720 -12.50152 -12.17321 -12.11868 -11.91283 -11.83103 -11.71440 -11.69018 -11.18631 -10.88207 -10.44494 -10.12522 -9.98483 -8.39582 -8.04649 -6.46121 -0.77022 0.60826 0.81453 1.00176 1.29383 1.30932 1.33778 1.40399 1.61648 1.99355 2.24686 2.34453 2.46353 2.92596 2.94584 2.96688 3.58218 3.81918 3.87563 3.98788 4.06525 4.07810 4.25499 4.34934 4.40377 4.45159 4.51086 4.59807 4.66919 4.69382 4.78418 4.83065 4.89559 4.92057 5.00150 5.10188 5.30378 5.36932 5.40992 5.46161 5.59379 5.59978 5.65673 5.88957 6.02291 6.42759 6.47925 6.60025 6.64968 6.69419 7.18974 8.77749 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.002663 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.223157 B =10510.826061 C =11937.148479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.183 4.183 3 C 0.092 3.908 4 O -0.365 6.365 5 C 0.538 3.462 6 O -0.517 6.517 7 C -0.172 4.172 8 C 0.277 3.723 9 N -0.472 5.472 10 C 0.158 3.842 11 C -0.213 4.213 12 C -0.034 4.034 13 C -0.229 4.229 14 C 0.250 3.750 15 N -0.607 5.607 16 C 0.086 3.914 17 C 0.224 3.776 18 C -0.539 4.539 19 H 0.026 0.974 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.944 3.056 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.235 1.235 26 C -0.223 4.223 27 C 0.001 3.999 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.201 0.799 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.031 0.969 41 H 0.268 0.732 42 H 0.154 0.846 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 13.586 -17.488 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.201 4.201 3 C 0.019 3.981 4 O -0.282 6.282 5 C 0.384 3.616 6 O -0.408 6.408 7 C -0.178 4.178 8 C -0.036 4.036 9 N -0.150 5.150 10 C 0.136 3.864 11 C -0.216 4.216 12 C -0.053 4.053 13 C -0.252 4.252 14 C 0.140 3.860 15 N -0.309 5.309 16 C -0.056 4.056 17 C 0.101 3.899 18 C -0.577 4.577 19 H 0.044 0.956 20 C -0.188 4.188 21 N -0.585 5.585 22 Si 0.767 3.233 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.158 1.158 26 C -0.246 4.246 27 C -0.018 4.018 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.218 0.782 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.172 0.828 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.150 12.292 -16.419 23.840 hybrid contribution -0.252 -0.769 1.021 1.303 sum -12.402 11.523 -15.399 22.885 Atomic orbital electron populations 1.24142 0.94835 1.03910 0.96181 1.22712 0.96365 0.97290 1.03707 1.22305 0.86486 0.97722 0.91582 1.86649 1.42513 1.40203 1.58865 1.20171 0.80630 0.80548 0.80235 1.90865 1.70709 1.34523 1.44742 1.17142 1.04336 0.92316 1.03976 1.25639 0.92852 0.92777 0.92297 1.81348 1.09415 1.12732 1.11460 1.23450 0.81749 0.92318 0.88845 1.18741 0.98680 1.10173 0.93978 1.20989 0.97591 0.93630 0.93108 1.20447 0.95742 1.07685 1.01300 1.18589 0.87992 0.90456 0.88968 1.46832 1.17033 1.54909 1.12097 1.21868 0.84231 0.96453 1.03012 1.19489 0.96594 0.91439 0.82359 1.21597 1.39453 0.97210 0.99455 0.95599 1.25898 0.95625 0.94769 1.02466 1.70065 1.48197 1.08748 1.31456 0.85764 0.78872 0.80503 0.78181 1.19616 1.20483 1.15828 1.20728 1.03517 1.08579 0.91736 1.21236 0.89816 0.91609 0.99140 0.86032 0.86892 0.86696 0.89599 0.89191 0.78189 0.87350 0.88202 0.90714 0.92227 0.89649 0.93632 0.95117 0.92293 0.82808 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 14.31 67.78 0.97 -0.78 16 2 C -0.18 -2.83 9.91 25.64 0.25 -2.58 16 3 C 0.09 1.60 5.89 71.24 0.42 2.02 16 4 O -0.37 -8.76 9.74 -57.47 -0.56 -9.32 16 5 C 0.54 12.50 7.87 70.09 0.55 13.06 16 6 O -0.52 -12.11 16.10 19.57 0.32 -11.80 16 7 C -0.17 -4.09 5.81 -19.82 -0.12 -4.21 16 8 C 0.28 8.92 11.38 88.33 1.01 9.93 16 9 N -0.47 -18.58 18.23 19.01 0.35 -18.23 16 10 C 0.16 2.89 9.43 24.30 0.23 3.12 16 11 C -0.21 -5.13 5.51 -20.16 -0.11 -5.24 16 12 C -0.03 -1.10 8.25 22.37 0.18 -0.92 16 13 C -0.23 -8.87 9.13 22.13 0.20 -8.67 16 14 C 0.25 8.81 6.55 38.57 0.25 9.06 16 15 N -0.61 -22.85 2.97 -726.43 -2.16 -25.01 16 16 C 0.09 2.43 10.17 127.77 1.30 3.73 16 17 C 0.22 10.06 3.96 85.63 0.34 10.40 16 18 C -0.54 -30.43 9.94 25.60 0.25 -30.18 16 19 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 20 C 0.01 0.62 5.47 84.65 0.46 1.08 16 21 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16 22 Si 0.94 42.78 27.47 68.60 1.88 44.67 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 26 C -0.22 -5.66 9.13 22.13 0.20 -5.45 16 27 C 0.00 0.01 9.75 22.37 0.22 0.23 16 28 H 0.12 1.04 8.06 -2.92 -0.02 1.02 16 29 H 0.11 0.99 7.90 -2.91 -0.02 0.96 16 30 H 0.12 1.87 8.06 -2.92 -0.02 1.85 16 31 H 0.09 1.32 7.86 -2.39 -0.02 1.30 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.20 1.99 7.61 -2.91 -0.02 1.97 16 34 H 0.11 3.67 5.97 -2.91 -0.02 3.66 16 35 H 0.10 4.47 6.11 -2.91 -0.02 4.46 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.84 8.07 -2.38 -0.02 1.82 16 38 H 0.09 1.97 6.16 -2.39 -0.01 1.96 16 39 H 0.05 1.93 7.13 -2.39 -0.02 1.92 16 40 H 0.03 1.39 5.59 -2.39 -0.01 1.38 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.15 2.99 6.11 -2.91 -0.02 2.98 16 43 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -77.35 377.01 7.73 -69.62 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.98 Total: 14.66 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 6.62 Total: -5.40 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -1.51 Total: -102.43 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.24 Total: -21.12 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Total: -77.35 7.73 -69.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007208484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.375 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds