Wall clock time and date at job start Tue Mar 31 2020 14:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00337 * 2 1 4 4 C 1.39710 * 119.99942 * 180.02562 * 2 1 3 5 5 C 1.39023 * 120.00452 * 180.02562 * 4 2 1 6 6 C 1.38214 * 120.22132 * 180.02562 * 5 4 2 7 7 C 1.38021 * 120.22839 * 359.67736 * 6 5 4 8 8 C 1.39588 * 120.00329 * 0.59553 * 7 6 5 9 9 C 1.47828 * 120.11243 * 179.69934 * 8 7 6 10 10 O 1.21562 * 120.00401 * 179.72717 * 9 8 7 11 11 N 1.34775 * 119.99572 * 359.72882 * 9 8 7 12 12 C 1.39856 * 119.99714 * 175.48233 * 11 9 8 13 13 C 1.38979 * 120.03717 * 215.11492 * 12 11 9 14 14 C 1.38155 * 120.06402 * 180.02562 * 13 12 11 15 15 C 1.38170 * 120.13823 * 359.72507 * 14 13 12 16 16 C 1.38917 * 120.07443 * 0.55538 * 15 14 13 17 17 O 1.35754 * 120.02782 * 179.72256 * 16 15 14 18 18 C 1.34826 * 117.00583 * 354.33680 * 17 16 15 19 19 H 1.08004 * 119.99592 * 5.02515 * 18 17 16 20 20 C 1.38648 * 120.00114 * 185.02582 * 18 17 16 21 21 N 1.31554 * 120.00258 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47352 * 59.99747 * 22 20 18 24 24 H 1.48499 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46966 * 300.00015 * 22 20 18 26 26 C 1.38729 * 120.03540 * 35.14445 * 12 11 9 27 27 C 1.38638 * 120.00452 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.46757 * 239.99988 * 1 2 3 29 29 H 1.08997 * 109.46894 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47609 * 119.99635 * 1 2 3 31 31 H 1.08994 * 109.47110 * 270.00352 * 3 2 1 32 32 H 1.08996 * 109.46553 * 30.00422 * 3 2 1 33 33 H 1.09001 * 109.46581 * 150.00117 * 3 2 1 34 34 H 1.07998 * 119.88979 * 359.97427 * 5 4 2 35 35 H 1.08001 * 119.87980 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.99645 * 180.30643 * 7 6 5 37 37 H 0.96998 * 120.00318 * 355.48747 * 11 9 8 38 38 H 1.08004 * 119.96811 * 0.04968 * 13 12 11 39 39 H 1.07998 * 119.93150 * 179.97438 * 14 13 12 40 40 H 1.08008 * 119.96442 * 180.27251 * 15 14 13 41 41 H 0.97006 * 120.00505 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.07051 * 359.97438 * 26 12 11 43 43 H 1.08003 * 120.10875 * 0.03773 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5538 -1.2101 0.0000 6 6 4.2493 -2.4044 -0.0011 7 6 3.5686 -3.6050 0.0040 8 6 2.1727 -3.6160 -0.0023 9 6 1.4411 -4.9005 -0.0035 10 8 0.2256 -4.9078 -0.0040 11 7 2.1220 -6.0637 -0.0041 12 6 1.4331 -7.2772 0.0901 13 6 1.9911 -8.3415 0.7882 14 6 1.3113 -9.5407 0.8811 15 6 0.0727 -9.6839 0.2857 16 6 -0.4878 -8.6257 -0.4184 17 8 -1.7023 -8.7694 -1.0078 18 6 -2.2583 -9.9971 -0.9729 19 1 -1.7779 -10.7920 -0.4217 20 6 -3.4468 -10.2393 -1.6447 21 7 -4.0317 -9.2712 -2.3165 22 14 -4.2175 -11.9402 -1.5958 23 1 -4.5196 -12.3065 -0.1888 24 1 -5.4737 -11.9373 -2.3877 25 1 -3.2715 -12.9290 -2.1725 26 6 0.1923 -7.4199 -0.5137 27 6 1.4704 -2.4106 -0.0016 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3792 1.5834 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1382 0.5138 34 1 4.0920 -0.2738 0.0004 35 1 5.3293 -2.3981 -0.0002 36 1 4.1159 -4.5361 0.0082 37 1 3.0897 -6.0592 -0.0698 38 1 2.9569 -8.2310 1.2587 39 1 1.7471 -10.3665 1.4238 40 1 -0.4582 -10.6213 0.3639 41 1 -4.8630 -9.4406 -2.7868 42 1 -0.2435 -6.5943 -1.0567 43 1 0.3904 -2.4127 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042786521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:26 Heat of formation + Delta-G solvation = 14.079621 kcal Electronic energy + Delta-G solvation = -26019.757246 eV Core-core repulsion = 22224.418970 eV Total energy + Delta-G solvation = -3795.338276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51558 -39.39942 -38.43282 -36.55405 -36.19711 -34.07880 -32.20616 -31.52525 -30.44408 -29.37365 -28.65534 -28.10302 -25.28737 -25.04475 -23.95377 -22.01040 -21.54774 -21.23610 -19.86562 -18.45802 -17.95531 -17.08827 -16.34158 -16.00738 -15.76346 -15.39782 -15.34638 -15.01897 -14.90473 -14.41518 -14.18387 -13.96701 -13.80114 -13.63554 -13.48335 -12.96553 -12.86419 -12.63935 -12.48246 -12.45433 -12.40186 -11.79991 -11.68142 -11.45652 -11.26843 -11.15857 -10.95204 -10.73328 -10.45955 -10.10696 -9.76424 -9.68857 -9.14582 -9.09017 -8.77292 -7.65822 -7.55884 -7.13607 -6.37728 -3.96899 0.78850 1.36614 2.13766 2.39495 2.80745 3.02690 3.16958 3.18965 3.21310 3.30264 3.86569 4.02218 4.52807 4.63838 4.66209 4.70422 4.91709 4.93740 5.02435 5.06210 5.17190 5.28746 5.33351 5.35179 5.39805 5.46970 5.53275 5.66543 5.70311 5.87897 6.00846 6.13853 6.21789 6.24628 6.29779 6.43873 6.52234 6.74551 6.94431 6.95519 7.08312 7.13123 7.19322 7.38994 7.52562 7.75156 7.84260 8.07084 8.39616 9.06992 9.79015 10.80185 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.002507 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.883315 B =11167.549882 C =12544.343990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.639 5.639 3 C 0.094 3.906 4 C 0.205 3.795 5 C -0.177 4.177 6 C -0.080 4.080 7 C -0.146 4.146 8 C -0.080 4.080 9 C 0.549 3.451 10 O -0.505 6.505 11 N -0.663 5.663 12 C 0.175 3.825 13 C -0.235 4.235 14 C -0.059 4.059 15 C -0.245 4.245 16 C 0.166 3.834 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.186 4.186 27 C -0.133 4.133 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.405 0.595 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.270 0.730 42 H 0.134 0.866 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.699 16.997 5.113 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.351 5.351 3 C -0.049 4.049 4 C 0.104 3.896 5 C -0.200 4.200 6 C -0.098 4.098 7 C -0.167 4.167 8 C -0.084 4.084 9 C 0.337 3.663 10 O -0.380 6.380 11 N -0.308 5.308 12 C 0.081 3.919 13 C -0.256 4.256 14 C -0.078 4.078 15 C -0.265 4.265 16 C 0.112 3.888 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.207 4.207 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.242 0.758 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.330 17.416 4.853 23.704 hybrid contribution 0.158 -0.845 0.053 0.861 sum 15.488 16.571 4.906 23.207 Atomic orbital electron populations 1.21670 0.79015 1.02467 1.01934 1.46323 1.05205 1.02900 1.80686 1.21656 0.97240 0.84857 1.01134 1.17684 0.91140 0.85649 0.95143 1.20836 0.91969 0.98850 1.08324 1.20790 0.99638 0.91497 0.97898 1.21057 0.92755 0.98440 1.04399 1.19648 0.93515 0.92644 1.02600 1.18400 0.87438 0.83622 0.76852 1.90852 1.13186 1.87039 1.46925 1.43253 1.10306 1.04409 1.72849 1.17176 0.93037 0.84440 0.97203 1.20277 1.02425 0.94509 1.08369 1.20495 0.94015 0.95915 0.97357 1.21181 0.98174 1.00727 1.06414 1.19141 0.85992 0.92655 0.91047 1.83995 1.25191 1.32561 1.65900 1.21298 1.06318 0.85953 1.33226 0.89050 1.25296 0.96034 0.99600 0.95631 1.70047 1.17706 1.31983 1.29877 0.85781 0.78539 0.80363 0.78717 1.19512 1.20327 1.19518 1.20190 0.95863 0.97772 1.06884 1.20765 1.00713 0.89525 1.04646 0.92426 0.90823 0.92327 0.93398 0.91500 0.91381 0.85734 0.85505 0.85898 0.75821 0.87347 0.87029 0.85463 0.92003 0.84804 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 9.40 59.85 0.56 1.32 16 2 N -0.64 -5.86 3.41 -187.59 -0.64 -6.50 16 3 C 0.09 0.56 10.16 59.85 0.61 1.17 16 4 C 0.21 2.26 6.55 -83.83 -0.55 1.71 16 5 C -0.18 -1.63 9.20 -39.30 -0.36 -1.99 16 6 C -0.08 -0.70 10.02 -39.67 -0.40 -1.10 16 7 C -0.15 -1.51 9.53 -39.16 -0.37 -1.89 16 8 C -0.08 -1.09 5.87 -105.00 -0.62 -1.71 16 9 C 0.55 9.42 7.61 -12.34 -0.09 9.33 16 10 O -0.51 -10.93 13.78 5.31 0.07 -10.86 16 11 N -0.66 -10.43 5.28 -10.74 -0.06 -10.48 16 12 C 0.17 3.41 6.29 -83.74 -0.53 2.88 16 13 C -0.23 -4.15 9.96 -39.34 -0.39 -4.54 16 14 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 15 C -0.25 -5.52 9.17 -39.35 -0.36 -5.88 16 16 C 0.17 4.29 6.64 -39.14 -0.26 4.03 16 17 O -0.17 -5.23 9.75 0.05 0.00 -5.23 16 18 C -0.39 -11.31 9.49 30.88 0.29 -11.02 16 19 H 0.09 2.42 5.20 -52.48 -0.27 2.14 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -26.12 13.67 55.48 0.76 -25.37 16 22 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 C -0.19 -4.43 8.64 -39.21 -0.34 -4.77 16 27 C -0.13 -1.78 8.85 -38.96 -0.35 -2.12 16 28 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 29 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 30 H 0.06 0.53 7.94 -51.93 -0.41 0.11 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 33 H 0.07 0.35 6.19 -51.93 -0.32 0.03 16 34 H 0.12 0.85 6.12 -52.49 -0.32 0.53 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.98 6.41 -52.48 -0.34 0.65 16 37 H 0.41 4.66 6.86 -40.82 -0.28 4.38 16 38 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.13 2.82 5.63 -52.48 -0.30 2.53 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 42 H 0.13 3.43 6.22 -52.49 -0.33 3.10 16 43 H 0.14 1.95 6.32 -52.48 -0.33 1.62 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -35.68 360.88 -8.05 -43.73 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.95 Total: 8.35 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -3.65 Total: -15.07 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.06 Total: -42.35 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.07 Total: -16.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.68 -8.05 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.810 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds