Wall clock time and date at job start Tue Mar 31 2020 14:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00337 * 2 1 4 4 C 1.39710 * 119.99942 * 180.02562 * 2 1 3 5 5 C 1.39023 * 120.00452 * 180.02562 * 4 2 1 6 6 C 1.38214 * 120.22132 * 180.02562 * 5 4 2 7 7 C 1.38021 * 120.22839 * 359.67736 * 6 5 4 8 8 C 1.39588 * 120.00329 * 0.59553 * 7 6 5 9 9 C 1.47828 * 120.11243 * 179.69934 * 8 7 6 10 10 O 1.21562 * 120.00401 * 179.72717 * 9 8 7 11 11 N 1.34775 * 119.99572 * 359.72882 * 9 8 7 12 12 C 1.39856 * 119.99714 * 175.48233 * 11 9 8 13 13 C 1.38979 * 120.03717 * 215.11492 * 12 11 9 14 14 C 1.38155 * 120.06402 * 180.02562 * 13 12 11 15 15 C 1.38170 * 120.13823 * 359.72507 * 14 13 12 16 16 C 1.38917 * 120.07443 * 0.55538 * 15 14 13 17 17 O 1.35754 * 120.02782 * 179.72256 * 16 15 14 18 18 C 1.34826 * 117.00583 * 354.33680 * 17 16 15 19 19 H 1.08004 * 119.99592 * 5.02515 * 18 17 16 20 20 C 1.38648 * 120.00114 * 185.02582 * 18 17 16 21 21 N 1.31554 * 120.00258 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47352 * 59.99747 * 22 20 18 24 24 H 1.48499 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46966 * 300.00015 * 22 20 18 26 26 C 1.38729 * 120.03540 * 35.14445 * 12 11 9 27 27 C 1.38638 * 120.00452 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.46757 * 239.99988 * 1 2 3 29 29 H 1.08997 * 109.46894 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47609 * 119.99635 * 1 2 3 31 31 H 1.08994 * 109.47110 * 270.00352 * 3 2 1 32 32 H 1.08996 * 109.46553 * 30.00422 * 3 2 1 33 33 H 1.09001 * 109.46581 * 150.00117 * 3 2 1 34 34 H 1.07998 * 119.88979 * 359.97427 * 5 4 2 35 35 H 1.08001 * 119.87980 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.99645 * 180.30643 * 7 6 5 37 37 H 0.96998 * 120.00318 * 355.48747 * 11 9 8 38 38 H 1.08004 * 119.96811 * 0.04968 * 13 12 11 39 39 H 1.07998 * 119.93150 * 179.97438 * 14 13 12 40 40 H 1.08008 * 119.96442 * 180.27251 * 15 14 13 41 41 H 0.97006 * 120.00505 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.07051 * 359.97438 * 26 12 11 43 43 H 1.08003 * 120.10875 * 0.03773 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5538 -1.2101 0.0000 6 6 4.2493 -2.4044 -0.0011 7 6 3.5686 -3.6050 0.0040 8 6 2.1727 -3.6160 -0.0023 9 6 1.4411 -4.9005 -0.0035 10 8 0.2256 -4.9078 -0.0040 11 7 2.1220 -6.0637 -0.0041 12 6 1.4331 -7.2772 0.0901 13 6 1.9911 -8.3415 0.7882 14 6 1.3113 -9.5407 0.8811 15 6 0.0727 -9.6839 0.2857 16 6 -0.4878 -8.6257 -0.4184 17 8 -1.7023 -8.7694 -1.0078 18 6 -2.2583 -9.9971 -0.9729 19 1 -1.7779 -10.7920 -0.4217 20 6 -3.4468 -10.2393 -1.6447 21 7 -4.0317 -9.2712 -2.3165 22 14 -4.2175 -11.9402 -1.5958 23 1 -4.5196 -12.3065 -0.1888 24 1 -5.4737 -11.9373 -2.3877 25 1 -3.2715 -12.9290 -2.1725 26 6 0.1923 -7.4199 -0.5137 27 6 1.4704 -2.4106 -0.0016 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3792 1.5834 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1382 0.5138 34 1 4.0920 -0.2738 0.0004 35 1 5.3293 -2.3981 -0.0002 36 1 4.1159 -4.5361 0.0082 37 1 3.0897 -6.0592 -0.0698 38 1 2.9569 -8.2310 1.2587 39 1 1.7471 -10.3665 1.4238 40 1 -0.4582 -10.6213 0.3639 41 1 -4.8630 -9.4406 -2.7868 42 1 -0.2435 -6.5943 -1.0567 43 1 0.3904 -2.4127 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042786521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:26 Heat of formation + Delta-G solvation = -10.315956 kcal Electronic energy + Delta-G solvation = -26020.815118 eV Core-core repulsion = 22224.418970 eV Total energy + Delta-G solvation = -3796.396148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81887 -40.67999 -39.94530 -38.21410 -37.07167 -35.62191 -34.27129 -32.47923 -31.40556 -30.96874 -29.91563 -29.04538 -27.34942 -25.75651 -25.20527 -23.53515 -22.88430 -22.39962 -21.11562 -20.04848 -19.37379 -18.75695 -17.46563 -17.27328 -16.77600 -16.62160 -16.51446 -16.41736 -16.00654 -15.98836 -15.80083 -15.49183 -15.17430 -14.75581 -14.61167 -14.43201 -14.25146 -13.60483 -13.53093 -13.46703 -13.21088 -13.15332 -13.08205 -12.95010 -12.65023 -12.47061 -12.37603 -12.16760 -12.05917 -11.47292 -11.32034 -10.87282 -10.84235 -10.76001 -9.99039 -9.36729 -8.89432 -8.46783 -8.30838 -6.16800 -0.21722 0.49920 0.57010 0.69785 1.33975 1.46321 1.51984 1.81664 1.90033 2.17935 2.24022 2.81067 2.93539 3.14564 3.41208 3.68642 3.92483 4.07861 4.13329 4.15293 4.27252 4.35368 4.36076 4.41341 4.45537 4.55914 4.66229 4.67817 4.74285 4.75454 4.83196 4.89377 4.94735 5.03799 5.10357 5.21358 5.34445 5.42943 5.43593 5.49116 5.62421 5.72770 5.78987 6.02457 6.18637 6.25792 6.41451 6.46438 6.96411 7.08861 7.79403 8.77103 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.002507 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.883315 B =11167.549882 C =12544.343990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.645 5.645 3 C 0.089 3.911 4 C 0.196 3.804 5 C -0.167 4.167 6 C -0.070 4.070 7 C -0.139 4.139 8 C -0.103 4.103 9 C 0.545 3.455 10 O -0.565 6.565 11 N -0.646 5.646 12 C 0.180 3.820 13 C -0.202 4.202 14 C -0.047 4.047 15 C -0.253 4.253 16 C 0.126 3.874 17 O -0.236 6.236 18 C -0.415 4.415 19 H 0.108 0.892 20 C -0.028 4.028 21 N -0.926 5.926 22 Si 1.025 2.975 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.253 1.253 26 C -0.215 4.215 27 C -0.163 4.163 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.430 0.570 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.126 0.874 41 H 0.272 0.728 42 H 0.097 0.903 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.946 16.873 7.086 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.356 5.356 3 C -0.053 4.053 4 C 0.093 3.907 5 C -0.189 4.189 6 C -0.088 4.088 7 C -0.160 4.160 8 C -0.107 4.107 9 C 0.336 3.664 10 O -0.444 6.444 11 N -0.293 5.293 12 C 0.086 3.914 13 C -0.222 4.222 14 C -0.066 4.066 15 C -0.273 4.273 16 C 0.074 3.926 17 O -0.143 6.143 18 C -0.491 4.491 19 H 0.125 0.875 20 C -0.225 4.225 21 N -0.564 5.564 22 Si 0.843 3.157 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.177 1.177 26 C -0.237 4.237 27 C -0.187 4.187 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.169 0.831 37 H 0.271 0.729 38 H 0.184 0.816 39 H 0.181 0.819 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.693 17.330 6.854 27.848 hybrid contribution -1.119 -0.546 -0.436 1.320 sum 19.574 16.784 6.418 26.571 Atomic orbital electron populations 1.21673 0.79336 1.03733 1.00503 1.46579 1.05430 1.03516 1.80101 1.21886 0.97816 0.83581 1.02037 1.17862 0.92257 0.85393 0.95167 1.21285 0.90939 1.00675 1.06021 1.21280 1.01605 0.90296 0.95653 1.21370 0.90914 1.00681 1.03004 1.19452 0.94997 0.90387 1.05833 1.19135 0.86981 0.85118 0.75204 1.90838 1.16076 1.87880 1.49615 1.43128 1.11316 1.02823 1.72062 1.17359 0.91582 0.86490 0.95978 1.20924 1.03716 0.92579 1.04966 1.21063 0.91974 0.97794 0.95725 1.21353 0.99922 0.99553 1.06481 1.19673 0.85815 0.94564 0.92500 1.83964 1.27831 1.33662 1.68808 1.21903 1.07039 0.86306 1.33845 0.87488 1.26754 0.96264 1.04713 0.94785 1.70228 1.18772 1.35138 1.32287 0.84569 0.77537 0.74066 0.79487 1.17924 1.19778 1.17698 1.20195 0.98216 0.96464 1.08776 1.20683 0.99667 0.91125 1.07226 0.93771 0.88042 0.94098 0.92687 0.89925 0.89962 0.82617 0.81294 0.83076 0.72876 0.81551 0.81893 0.85658 0.91882 0.88477 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 9.40 127.77 1.20 2.81 16 2 N -0.64 -11.41 3.41 -747.42 -2.55 -13.96 16 3 C 0.09 0.83 10.16 127.77 1.30 2.13 16 4 C 0.20 4.18 6.55 38.17 0.25 4.43 16 5 C -0.17 -2.48 9.20 22.45 0.21 -2.28 16 6 C -0.07 -0.91 10.02 22.21 0.22 -0.69 16 7 C -0.14 -2.46 9.53 22.54 0.21 -2.24 16 8 C -0.10 -2.84 5.87 -20.11 -0.12 -2.96 16 9 C 0.55 19.58 7.61 86.78 0.66 20.24 16 10 O -0.57 -27.08 13.78 -3.91 -0.05 -27.13 16 11 N -0.65 -19.64 5.28 -306.16 -1.62 -21.26 16 12 C 0.18 6.92 6.29 38.16 0.24 7.16 16 13 C -0.20 -6.23 9.96 22.43 0.22 -6.01 16 14 C -0.05 -1.59 10.03 22.23 0.22 -1.36 16 15 C -0.25 -11.45 9.17 22.42 0.21 -11.25 16 16 C 0.13 6.92 6.64 22.56 0.15 7.07 16 17 O -0.24 -15.56 9.75 -22.75 -0.22 -15.78 16 18 C -0.42 -25.55 9.49 67.92 0.64 -24.91 16 19 H 0.11 5.91 5.20 -2.91 -0.02 5.89 16 20 C -0.03 -1.70 5.49 84.83 0.47 -1.24 16 21 N -0.93 -60.46 13.67 21.61 0.30 -60.16 16 22 Si 1.03 44.61 29.55 68.60 2.03 46.64 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 26 C -0.21 -10.99 8.64 22.51 0.19 -10.79 16 27 C -0.16 -4.65 8.85 22.67 0.20 -4.45 16 28 H 0.04 0.88 7.95 -2.39 -0.02 0.86 16 29 H 0.10 1.16 7.79 -2.39 -0.02 1.14 16 30 H 0.04 0.85 7.94 -2.39 -0.02 0.83 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.53 7.92 -2.39 -0.02 0.51 16 33 H 0.08 0.54 6.19 -2.39 -0.01 0.52 16 34 H 0.16 1.34 6.12 -2.91 -0.02 1.32 16 35 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.15 1.68 6.41 -2.91 -0.02 1.67 16 37 H 0.43 8.39 6.86 -92.71 -0.64 7.75 16 38 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.13 5.61 5.63 -2.91 -0.02 5.60 16 41 H 0.27 16.25 8.31 -92.70 -0.77 15.48 16 42 H 0.10 5.61 6.22 -2.91 -0.02 5.59 16 43 H 0.11 3.55 6.32 -2.91 -0.02 3.54 16 Total: -1.00 -91.40 360.88 4.79 -86.61 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.43 Total: 29.36 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 6.48 Total: -24.31 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.87 Total: -95.38 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.28 Total: -42.92 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -91.40 4.79 -86.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.292 kcal (2) G-P(sol) polarization free energy of solvation -91.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds