Wall clock time and date at job start Tue Mar 31 2020 14:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46491 * 120.00218 * 2 1 4 4 C 1.50702 * 109.47262 * 269.99811 * 3 2 1 5 5 C 1.38232 * 120.00296 * 269.72578 * 4 3 2 6 6 C 1.38235 * 120.00222 * 179.76456 * 5 4 3 7 7 C 1.38235 * 119.99512 * 0.51267 * 6 5 4 8 8 C 1.38232 * 120.00464 * 359.74164 * 7 6 5 9 9 C 1.38235 * 119.99579 * 90.00303 * 4 3 2 10 10 C 1.34779 * 119.99371 * 179.97438 * 2 1 3 11 11 O 1.21596 * 119.99660 * 180.27598 * 10 2 1 12 12 N 1.34767 * 120.00590 * 0.02562 * 10 2 1 13 13 C 1.40028 * 120.00591 * 174.80169 * 12 10 2 14 14 C 1.38915 * 119.99569 * 326.15471 * 13 12 10 15 15 C 1.38011 * 119.99856 * 179.79068 * 14 13 12 16 16 C 1.38906 * 119.99884 * 0.46026 * 15 14 13 17 17 O 1.35780 * 120.00188 * 179.77012 * 16 15 14 18 18 C 1.34812 * 117.00266 * 185.94418 * 17 16 15 19 19 H 1.08000 * 120.00199 * 5.40776 * 18 17 16 20 20 C 1.38633 * 119.99945 * 185.40938 * 18 17 16 21 21 N 1.31577 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47120 * 89.99882 * 22 20 18 24 24 H 1.48497 * 109.46974 * 209.99829 * 22 20 18 25 25 H 1.48502 * 109.47011 * 329.99693 * 22 20 18 26 26 C 1.38910 * 120.00204 * 359.79331 * 16 15 14 27 27 C 1.38009 * 119.99984 * 359.97438 * 26 16 15 28 28 H 1.08992 * 109.47255 * 269.99827 * 1 2 3 29 29 H 1.09006 * 109.46723 * 30.00211 * 1 2 3 30 30 H 1.09003 * 109.47324 * 149.99402 * 1 2 3 31 31 H 1.09000 * 109.47171 * 29.99889 * 3 2 1 32 32 H 1.09007 * 109.46996 * 149.99954 * 3 2 1 33 33 H 1.08007 * 119.99852 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.99880 * 180.22964 * 6 5 4 35 35 H 1.08006 * 119.99663 * 179.72552 * 7 6 5 36 36 H 1.07997 * 120.00015 * 179.97438 * 8 7 6 37 37 H 1.07995 * 120.00660 * 359.97438 * 9 4 3 38 38 H 0.97008 * 119.99824 * 354.80017 * 12 10 2 39 39 H 1.07999 * 120.00147 * 0.02562 * 14 13 12 40 40 H 1.07997 * 120.00292 * 180.23231 * 15 14 13 41 41 H 0.97001 * 119.99486 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.00045 * 179.97438 * 26 16 15 43 43 H 1.08000 * 120.00056 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6034 1.3093 -2.0706 6 6 3.8315 1.7043 -3.3755 7 6 2.9100 2.5025 -4.0270 8 6 1.7579 2.9013 -3.3756 9 6 1.5272 2.5018 -2.0724 10 6 2.1388 -1.1673 0.0005 11 8 3.3548 -1.1674 0.0056 12 7 1.4650 -2.3344 0.0005 13 6 2.1607 -3.5447 -0.1088 14 6 3.3171 -3.6142 -0.8754 15 6 4.0052 -4.8060 -0.9797 16 6 3.5362 -5.9382 -0.3259 17 8 4.2106 -7.1119 -0.4322 18 6 3.6387 -8.1990 0.1231 19 1 2.6477 -8.1308 0.5470 20 6 4.3226 -9.4046 0.1501 21 7 5.5297 -9.4879 -0.3667 22 14 3.5297 -10.9112 0.9190 23 1 2.7663 -11.6520 -0.1171 24 1 4.5840 -11.7925 1.4818 25 1 2.6085 -10.4866 2.0037 26 6 2.3770 -5.8700 0.4364 27 6 1.6915 -4.6771 0.5446 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1382 0.5139 33 1 4.3257 0.6897 -1.5598 34 1 4.7319 1.3931 -3.8843 35 1 3.0904 2.8148 -5.0451 36 1 1.0382 3.5252 -3.8846 37 1 0.6271 2.8134 -1.5635 38 1 0.4978 -2.3361 0.0763 39 1 3.6797 -2.7348 -1.3867 40 1 4.9063 -4.8592 -1.5726 41 1 6.0083 -10.3314 -0.3475 42 1 2.0122 -6.7505 0.9444 43 1 0.7900 -4.6242 1.1370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043572821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:30 Heat of formation + Delta-G solvation = 13.042997 kcal Electronic energy + Delta-G solvation = -26271.894871 eV Core-core repulsion = 22476.511643 eV Total energy + Delta-G solvation = -3795.383228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59767 -39.33768 -38.67188 -36.75710 -35.51383 -34.03974 -32.22294 -31.73054 -31.04650 -30.17117 -27.99693 -27.54281 -25.79737 -25.08722 -22.70483 -22.28576 -21.94923 -21.07956 -19.77152 -18.34524 -17.85712 -17.23937 -17.04460 -16.48522 -15.87399 -15.41455 -15.18346 -15.02171 -14.53401 -14.34939 -13.97414 -13.80404 -13.55301 -13.47699 -13.26621 -13.12413 -12.90858 -12.75614 -12.63916 -12.40668 -12.08072 -11.75892 -11.53102 -11.50132 -11.40634 -11.11808 -11.04532 -10.64282 -10.43512 -9.94309 -9.63375 -9.21991 -9.07366 -9.01138 -8.81746 -8.65109 -8.15730 -6.85526 -6.40951 -3.98868 1.09746 1.25597 2.20338 2.27055 2.68294 3.13835 3.15393 3.20349 3.33551 3.66860 3.97742 4.00463 4.57698 4.62241 4.63847 4.77541 4.83444 4.91882 5.01551 5.14109 5.17226 5.31013 5.33591 5.36423 5.48572 5.51972 5.59280 5.80624 5.82298 5.89977 6.10210 6.20840 6.27051 6.28884 6.36836 6.38045 6.46691 6.70954 6.84457 6.86769 6.95000 7.14366 7.25724 7.27420 7.46619 7.84248 7.99453 8.03750 8.68591 9.04525 9.76076 10.77256 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.002335 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.514627 B =11986.932908 C =12735.475057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.631 5.631 3 C 0.173 3.827 4 C -0.108 4.108 5 C -0.091 4.091 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.128 4.128 9 C -0.109 4.109 10 C 0.702 3.298 11 O -0.571 6.571 12 N -0.675 5.675 13 C 0.057 3.943 14 C -0.067 4.067 15 C -0.176 4.176 16 C 0.145 3.855 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.218 4.218 27 C -0.094 4.094 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.397 0.603 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.269 0.731 42 H 0.131 0.869 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 23.274 -1.874 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.368 5.368 3 C 0.050 3.950 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.141 4.141 7 C -0.137 4.137 8 C -0.146 4.146 9 C -0.128 4.128 10 C 0.404 3.596 11 O -0.447 6.447 12 N -0.323 5.323 13 C -0.036 4.036 14 C -0.087 4.087 15 C -0.196 4.196 16 C 0.091 3.909 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.238 4.238 27 C -0.114 4.114 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.232 0.768 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.149 0.851 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.806 23.047 -1.991 25.532 hybrid contribution -1.102 -0.724 0.395 1.376 sum -11.907 22.322 -1.596 25.350 Atomic orbital electron populations 1.21738 0.80041 1.03146 1.01638 1.47030 1.06142 1.04652 1.79006 1.20195 0.98442 0.83775 0.92560 1.20294 0.95108 0.98283 0.97245 1.21309 0.97162 0.97804 0.94651 1.21234 0.99606 0.98187 0.95070 1.21179 0.94543 0.98181 0.99787 1.21090 0.97696 1.00765 0.95047 1.21010 0.98595 0.98199 0.94973 1.15875 0.85468 0.80186 0.78058 1.90920 1.11247 1.85703 1.56818 1.42485 1.09401 1.03585 1.76829 1.17038 0.97825 0.84176 1.04545 1.20609 0.94335 0.96827 0.96910 1.20118 1.02794 0.91000 1.05699 1.19408 0.90994 0.87443 0.93037 1.84005 1.43777 1.12798 1.67584 1.21291 1.00906 0.85599 1.38866 0.89166 1.25282 0.95686 0.98462 0.97180 1.70052 1.11187 1.26632 1.41934 0.85723 0.78514 0.80144 0.79089 1.19931 1.20308 1.19255 1.20959 0.98626 0.98272 1.05906 1.20430 1.00036 0.92154 0.98796 0.92511 0.90882 0.91427 0.89828 0.88717 0.85091 0.86018 0.86293 0.86299 0.86426 0.76762 0.85775 0.86199 0.92070 0.85144 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.16 59.85 0.61 1.14 16 2 N -0.63 -6.77 2.86 -188.74 -0.54 -7.31 16 3 C 0.17 1.67 5.54 -5.20 -0.03 1.64 16 4 C -0.11 -1.11 5.46 -104.62 -0.57 -1.68 16 5 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 8 C -0.13 -1.09 10.05 -39.58 -0.40 -1.48 16 9 C -0.11 -0.94 9.70 -39.58 -0.38 -1.32 16 10 C 0.70 10.50 8.01 -86.92 -0.70 9.81 16 11 O -0.57 -10.60 13.21 5.28 0.07 -10.53 16 12 N -0.67 -9.75 5.18 -14.18 -0.07 -9.83 16 13 C 0.06 1.04 6.27 -83.61 -0.52 0.52 16 14 C -0.07 -1.35 8.65 -39.41 -0.34 -1.69 16 15 C -0.18 -3.96 9.99 -39.42 -0.39 -4.35 16 16 C 0.14 3.58 6.65 -39.09 -0.26 3.32 16 17 O -0.18 -5.16 9.75 0.01 0.00 -5.16 16 18 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 19 H 0.09 2.33 5.29 -52.49 -0.28 2.05 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 22 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.22 -4.75 9.13 -39.42 -0.36 -5.11 16 27 C -0.09 -1.72 9.96 -39.42 -0.39 -2.11 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 6.45 -51.93 -0.33 0.10 16 31 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16 32 H 0.09 1.06 7.36 -51.93 -0.38 0.68 16 33 H 0.13 1.72 7.62 -52.48 -0.40 1.32 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.40 4.33 6.63 -40.82 -0.27 4.06 16 39 H 0.12 2.48 6.45 -52.49 -0.34 2.14 16 40 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -34.22 366.20 -9.25 -43.47 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.23 Total: 8.74 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -4.73 Total: -15.66 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.15 Total: -41.97 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.22 -9.25 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.510 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds