Wall clock time and date at job start Tue Mar 31 2020 14:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46491 * 120.00218 * 2 1 4 4 C 1.50702 * 109.47262 * 269.99811 * 3 2 1 5 5 C 1.38232 * 120.00296 * 269.72578 * 4 3 2 6 6 C 1.38235 * 120.00222 * 179.76456 * 5 4 3 7 7 C 1.38235 * 119.99512 * 0.51267 * 6 5 4 8 8 C 1.38232 * 120.00464 * 359.74164 * 7 6 5 9 9 C 1.38235 * 119.99579 * 90.00303 * 4 3 2 10 10 C 1.34779 * 119.99371 * 179.97438 * 2 1 3 11 11 O 1.21596 * 119.99660 * 180.27598 * 10 2 1 12 12 N 1.34767 * 120.00590 * 0.02562 * 10 2 1 13 13 C 1.40028 * 120.00591 * 174.80169 * 12 10 2 14 14 C 1.38915 * 119.99569 * 326.15471 * 13 12 10 15 15 C 1.38011 * 119.99856 * 179.79068 * 14 13 12 16 16 C 1.38906 * 119.99884 * 0.46026 * 15 14 13 17 17 O 1.35780 * 120.00188 * 179.77012 * 16 15 14 18 18 C 1.34812 * 117.00266 * 185.94418 * 17 16 15 19 19 H 1.08000 * 120.00199 * 5.40776 * 18 17 16 20 20 C 1.38633 * 119.99945 * 185.40938 * 18 17 16 21 21 N 1.31577 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47120 * 89.99882 * 22 20 18 24 24 H 1.48497 * 109.46974 * 209.99829 * 22 20 18 25 25 H 1.48502 * 109.47011 * 329.99693 * 22 20 18 26 26 C 1.38910 * 120.00204 * 359.79331 * 16 15 14 27 27 C 1.38009 * 119.99984 * 359.97438 * 26 16 15 28 28 H 1.08992 * 109.47255 * 269.99827 * 1 2 3 29 29 H 1.09006 * 109.46723 * 30.00211 * 1 2 3 30 30 H 1.09003 * 109.47324 * 149.99402 * 1 2 3 31 31 H 1.09000 * 109.47171 * 29.99889 * 3 2 1 32 32 H 1.09007 * 109.46996 * 149.99954 * 3 2 1 33 33 H 1.08007 * 119.99852 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.99880 * 180.22964 * 6 5 4 35 35 H 1.08006 * 119.99663 * 179.72552 * 7 6 5 36 36 H 1.07997 * 120.00015 * 179.97438 * 8 7 6 37 37 H 1.07995 * 120.00660 * 359.97438 * 9 4 3 38 38 H 0.97008 * 119.99824 * 354.80017 * 12 10 2 39 39 H 1.07999 * 120.00147 * 0.02562 * 14 13 12 40 40 H 1.07997 * 120.00292 * 180.23231 * 15 14 13 41 41 H 0.97001 * 119.99486 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.00045 * 179.97438 * 26 16 15 43 43 H 1.08000 * 120.00056 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6034 1.3093 -2.0706 6 6 3.8315 1.7043 -3.3755 7 6 2.9100 2.5025 -4.0270 8 6 1.7579 2.9013 -3.3756 9 6 1.5272 2.5018 -2.0724 10 6 2.1388 -1.1673 0.0005 11 8 3.3548 -1.1674 0.0056 12 7 1.4650 -2.3344 0.0005 13 6 2.1607 -3.5447 -0.1088 14 6 3.3171 -3.6142 -0.8754 15 6 4.0052 -4.8060 -0.9797 16 6 3.5362 -5.9382 -0.3259 17 8 4.2106 -7.1119 -0.4322 18 6 3.6387 -8.1990 0.1231 19 1 2.6477 -8.1308 0.5470 20 6 4.3226 -9.4046 0.1501 21 7 5.5297 -9.4879 -0.3667 22 14 3.5297 -10.9112 0.9190 23 1 2.7663 -11.6520 -0.1171 24 1 4.5840 -11.7925 1.4818 25 1 2.6085 -10.4866 2.0037 26 6 2.3770 -5.8700 0.4364 27 6 1.6915 -4.6771 0.5446 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1382 0.5139 33 1 4.3257 0.6897 -1.5598 34 1 4.7319 1.3931 -3.8843 35 1 3.0904 2.8148 -5.0451 36 1 1.0382 3.5252 -3.8846 37 1 0.6271 2.8134 -1.5635 38 1 0.4978 -2.3361 0.0763 39 1 3.6797 -2.7348 -1.3867 40 1 4.9063 -4.8592 -1.5726 41 1 6.0083 -10.3314 -0.3475 42 1 2.0122 -6.7505 0.9444 43 1 0.7900 -4.6242 1.1370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043572821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:29 Heat of formation + Delta-G solvation = -7.579400 kcal Electronic energy + Delta-G solvation = -26272.789125 eV Core-core repulsion = 22476.511643 eV Total energy + Delta-G solvation = -3796.277482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78054 -40.62420 -39.93417 -38.33645 -36.59165 -35.46162 -34.15379 -32.61850 -31.86635 -31.76674 -29.52388 -28.23016 -27.40749 -26.42733 -23.92225 -23.42333 -23.22675 -22.24974 -21.02673 -19.84002 -19.31296 -18.88629 -17.99620 -17.78724 -16.80646 -16.53019 -16.36577 -16.15168 -15.92709 -15.78996 -15.49574 -15.19755 -14.99405 -14.54139 -14.42552 -14.26927 -14.09378 -13.73512 -13.56277 -13.52344 -13.35262 -13.20016 -13.15630 -12.76361 -12.73019 -12.37235 -12.11956 -12.10625 -11.84111 -11.39577 -11.27050 -10.95279 -10.55258 -9.84265 -9.80690 -9.79950 -9.63032 -8.54855 -8.44119 -6.11290 0.34614 0.51461 0.52971 0.60049 1.37430 1.46644 1.55452 1.66027 2.10302 2.20265 2.82663 2.86060 3.07595 3.18507 3.52337 3.87890 3.91306 4.05309 4.13756 4.17160 4.25093 4.29901 4.30207 4.50335 4.59109 4.59835 4.65143 4.74639 4.77802 4.80205 4.91952 5.05682 5.11589 5.17010 5.19043 5.30662 5.38164 5.53261 5.56599 5.58923 5.63791 5.69847 5.70741 5.93466 6.04133 6.13092 6.19712 6.90498 7.00157 7.52591 7.81710 8.79538 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.002335 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.514627 B =11986.932908 C =12735.475057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.620 5.620 3 C 0.172 3.828 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.141 4.141 7 C -0.125 4.125 8 C -0.128 4.128 9 C -0.104 4.104 10 C 0.694 3.306 11 O -0.614 6.614 12 N -0.664 5.664 13 C 0.085 3.915 14 C -0.073 4.073 15 C -0.188 4.188 16 C 0.106 3.894 17 O -0.233 6.233 18 C -0.411 4.411 19 H 0.107 0.893 20 C -0.027 4.027 21 N -0.924 5.924 22 Si 1.021 2.979 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.249 1.249 26 C -0.217 4.217 27 C -0.082 4.082 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.419 0.581 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.272 0.728 42 H 0.133 0.867 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.898 25.730 -0.877 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.356 5.356 3 C 0.050 3.950 4 C -0.118 4.118 5 C -0.138 4.138 6 C -0.159 4.159 7 C -0.143 4.143 8 C -0.145 4.145 9 C -0.122 4.122 10 C 0.396 3.604 11 O -0.494 6.494 12 N -0.315 5.315 13 C -0.009 4.009 14 C -0.093 4.093 15 C -0.208 4.208 16 C 0.055 3.945 17 O -0.139 6.139 18 C -0.487 4.487 19 H 0.124 0.876 20 C -0.224 4.224 21 N -0.562 5.562 22 Si 0.840 3.160 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.172 1.172 26 C -0.236 4.236 27 C -0.102 4.102 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.259 0.741 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.151 0.849 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.715 25.605 -0.992 30.060 hybrid contribution 0.277 -1.042 0.025 1.078 sum -15.439 24.563 -0.967 29.028 Atomic orbital electron populations 1.22096 0.76967 1.04767 1.03569 1.47092 1.07955 1.03355 1.77192 1.20333 0.98163 0.84045 0.92506 1.20381 0.94978 0.98904 0.97515 1.21253 0.97993 0.99013 0.95528 1.21368 1.00477 0.99153 0.94944 1.21475 0.94515 0.97529 1.00745 1.21508 0.97630 1.00256 0.95155 1.21351 0.98984 0.96822 0.95021 1.16145 0.85108 0.81266 0.77865 1.90913 1.13506 1.86463 1.58516 1.42304 1.10359 1.02176 1.76678 1.17136 0.96376 0.85769 1.01632 1.20666 0.95306 0.95741 0.97590 1.20212 1.03038 0.91609 1.05894 1.19830 0.92568 0.86986 0.95075 1.83969 1.45749 1.14202 1.70012 1.21863 1.01837 0.86073 1.38921 0.87619 1.26651 0.96237 1.01923 0.97569 1.70216 1.13456 1.27760 1.44801 0.84552 0.77707 0.75168 0.78559 1.18786 1.19952 1.17249 1.21119 0.97683 0.99813 1.05024 1.20782 1.00934 0.90371 0.98146 0.90359 0.88326 0.90872 0.85822 0.91290 0.88128 0.86056 0.84370 0.83370 0.83021 0.74127 0.85827 0.87215 0.91942 0.84905 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.16 127.77 1.30 1.88 16 2 N -0.62 -11.47 2.86 -869.31 -2.48 -13.95 16 3 C 0.17 2.95 5.54 85.64 0.47 3.42 16 4 C -0.12 -2.21 5.46 -19.87 -0.11 -2.31 16 5 C -0.12 -2.91 9.70 22.27 0.22 -2.69 16 6 C -0.14 -3.03 10.05 22.27 0.22 -2.81 16 7 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 8 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 9 C -0.10 -1.39 9.70 22.27 0.22 -1.17 16 10 C 0.69 19.63 8.01 179.06 1.43 21.06 16 11 O -0.61 -23.15 13.21 -4.02 -0.05 -23.20 16 12 N -0.66 -17.26 5.18 -317.04 -1.64 -18.90 16 13 C 0.09 2.97 6.27 38.15 0.24 3.21 16 14 C -0.07 -3.00 8.65 22.38 0.19 -2.80 16 15 C -0.19 -8.92 9.99 22.38 0.22 -8.69 16 16 C 0.11 5.48 6.65 22.59 0.15 5.63 16 17 O -0.23 -14.34 9.75 -22.90 -0.22 -14.57 16 18 C -0.41 -24.03 9.44 67.91 0.64 -23.39 16 19 H 0.11 5.55 5.29 -2.91 -0.02 5.53 16 20 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 21 N -0.92 -57.80 13.67 21.61 0.30 -57.51 16 22 Si 1.02 42.93 29.55 68.60 2.03 44.95 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 26 C -0.22 -9.37 9.13 22.38 0.20 -9.17 16 27 C -0.08 -2.79 9.96 22.38 0.22 -2.57 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 0.41 8.07 -2.38 -0.02 0.39 16 30 H 0.07 0.57 6.45 -2.39 -0.02 0.56 16 31 H 0.12 1.12 8.02 -2.39 -0.02 1.10 16 32 H 0.07 1.55 7.36 -2.38 -0.02 1.54 16 33 H 0.10 2.98 7.62 -2.91 -0.02 2.96 16 34 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.42 7.24 6.63 -92.70 -0.61 6.63 16 39 H 0.12 5.13 6.45 -2.91 -0.02 5.11 16 40 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 42 H 0.13 5.64 5.71 -2.91 -0.02 5.62 16 43 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -82.23 366.20 4.89 -77.33 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.43 Total: 30.67 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 6.54 Total: -24.83 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -3.83 Total: -90.36 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.28 Total: -37.77 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -82.23 4.89 -77.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.754 kcal (2) G-P(sol) polarization free energy of solvation -82.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds