Wall clock time and date at job start Tue Mar 31 2020 14:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 117.00296 * 2 1 4 4 C 1.38998 * 119.91347 * 179.97438 * 3 2 1 5 5 C 1.37712 * 120.08740 * 180.02562 * 4 3 2 6 6 C 1.39733 * 119.90758 * 359.97438 * 5 4 3 7 7 C 1.47603 * 120.08311 * 180.02562 * 6 5 4 8 8 O 1.21592 * 119.99775 * 23.64331 * 7 6 5 9 9 N 1.34779 * 120.00381 * 203.63688 * 7 6 5 10 10 C 1.46498 * 119.99401 * 1.48009 * 9 7 6 11 11 C 1.50705 * 109.47005 * 259.03210 * 10 9 7 12 12 H 1.08002 * 120.00139 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99938 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00199 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47216 * 59.99364 * 15 13 11 17 17 H 1.48495 * 109.47212 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46862 * 299.99651 * 15 13 11 19 19 C 1.46490 * 120.00382 * 181.47652 * 9 7 6 20 20 C 1.50704 * 109.47215 * 270.00460 * 19 9 7 21 21 C 1.38671 * 120.41985 * 90.00035 * 20 19 9 22 22 C 1.38624 * 118.42092 * 179.97438 * 21 20 19 23 23 C 1.38234 * 119.16270 * 0.25271 * 22 21 20 24 24 N 1.31863 * 120.75692 * 359.49700 * 23 22 21 25 25 C 1.31883 * 121.72621 * 0.49112 * 24 23 22 26 26 C 1.39729 * 119.83000 * 0.27820 * 6 5 4 27 27 C 1.37704 * 119.90714 * 359.46353 * 26 6 5 28 28 H 1.08997 * 109.47285 * 60.00045 * 1 2 3 29 29 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47228 * 299.99925 * 1 2 3 31 31 H 1.07993 * 119.95864 * 0.02776 * 4 3 2 32 32 H 1.07996 * 120.04395 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47557 * 19.03006 * 10 9 7 34 34 H 1.09001 * 109.47274 * 139.03444 * 10 9 7 35 35 H 0.96997 * 120.00222 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47240 * 150.00085 * 19 9 7 37 37 H 1.09003 * 109.47065 * 30.00132 * 19 9 7 38 38 H 1.08000 * 120.78616 * 359.95517 * 21 20 19 39 39 H 1.07997 * 120.42311 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.62059 * 179.74478 * 23 22 21 41 41 H 1.08005 * 119.61294 * 179.74756 * 25 24 23 42 42 H 1.08001 * 120.04697 * 179.72667 * 26 6 5 43 43 H 1.08000 * 119.95448 * 180.25088 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4333 1.2797 0.0005 5 6 4.0622 2.5048 0.0011 6 6 3.3029 3.6778 0.0005 7 6 3.9731 4.9929 0.0005 8 8 5.1087 5.0965 -0.4213 9 7 3.3262 6.0790 0.4680 10 6 1.9699 5.9483 1.0061 11 6 0.9729 6.4023 -0.0289 12 1 1.3154 6.7526 -0.9915 13 6 -0.3763 6.3703 0.2529 14 7 -0.7934 5.9433 1.4248 15 14 -1.6121 6.9323 -1.0303 16 1 -1.4796 6.0911 -2.2469 17 1 -2.9869 6.8000 -0.4848 18 1 -1.3521 8.3520 -1.3794 19 6 3.9793 7.3899 0.4381 20 6 4.7395 7.6018 1.7220 21 6 6.0643 7.2057 1.8270 22 6 6.7242 7.4210 3.0270 23 6 6.0429 8.0142 4.0733 24 7 4.7842 8.3825 3.9359 25 6 4.1255 8.1937 2.8091 26 6 1.9077 3.6026 0.0053 27 6 1.2863 2.3737 -0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0194 0.3726 0.0005 32 1 5.1409 2.5588 0.0019 33 1 1.7791 4.9061 1.2617 34 1 1.8724 6.5652 1.8995 35 1 -1.7427 5.9204 1.6229 36 1 3.2250 8.1692 0.3297 37 1 4.6697 7.4328 -0.4042 38 1 6.5699 6.7404 0.9938 39 1 7.7561 7.1249 3.1445 40 1 6.5486 8.1817 5.0128 41 1 3.0939 8.5050 2.7354 42 1 1.3174 4.5070 0.0094 43 1 0.2079 2.3147 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060625018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:48 Heat of formation + Delta-G solvation = 16.983870 kcal Electronic energy + Delta-G solvation = -27547.380779 eV Core-core repulsion = 23752.168440 eV Total energy + Delta-G solvation = -3795.212339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28806 -39.79435 -38.89380 -36.60551 -35.49795 -33.33337 -32.21845 -31.49751 -30.54472 -29.81143 -27.85121 -27.26249 -25.92441 -23.49519 -23.17309 -22.51184 -22.13088 -21.33338 -19.02535 -17.75678 -17.00893 -16.83282 -16.50922 -16.13211 -15.81952 -15.56225 -15.26834 -15.02435 -14.69935 -14.18121 -14.12974 -13.65881 -13.50276 -13.26059 -13.02464 -12.97281 -12.72124 -12.49035 -12.25954 -12.15457 -11.75054 -11.65768 -11.34291 -11.20591 -11.07576 -10.95052 -10.69241 -10.39057 -9.99840 -9.69511 -9.58275 -9.22119 -9.17646 -8.83687 -8.71317 -8.41303 -7.94965 -7.72425 -6.40039 -4.50980 1.32909 1.47269 1.55547 1.86246 3.12527 3.18524 3.21071 3.44205 3.45466 3.77101 4.13849 4.24203 4.38878 4.70001 4.89224 5.05047 5.13295 5.19389 5.24150 5.27653 5.28344 5.31719 5.39500 5.42787 5.55954 5.67101 5.76667 5.90808 5.92963 6.06321 6.09840 6.18461 6.38160 6.49685 6.55182 6.59919 6.67499 6.93528 6.96455 7.01027 7.07906 7.23367 7.37839 7.54434 7.66925 7.79674 8.20299 8.22115 8.59478 8.90298 9.17729 10.63622 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.005071 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.031773 B = 5520.754236 C = 7653.337520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.322 6.322 3 C 0.141 3.859 4 C -0.181 4.181 5 C -0.029 4.029 6 C -0.178 4.178 7 C 0.563 3.437 8 O -0.572 6.572 9 N -0.585 5.585 10 C 0.208 3.792 11 C -0.549 4.549 12 H 0.068 0.932 13 C 0.071 3.929 14 N -0.877 5.877 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.162 3.838 20 C -0.145 4.145 21 C -0.056 4.056 22 C -0.182 4.182 23 C 0.089 3.911 24 N -0.490 5.490 25 C 0.115 3.885 26 C -0.060 4.060 27 C -0.222 4.222 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.271 0.729 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.215 0.785 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 -3.933 0.344 6.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.235 6.235 3 C 0.095 3.905 4 C -0.200 4.200 5 C -0.048 4.048 6 C -0.181 4.181 7 C 0.354 3.646 8 O -0.455 6.455 9 N -0.313 5.313 10 C 0.089 3.911 11 C -0.587 4.587 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.513 5.513 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.038 3.962 20 C -0.148 4.148 21 C -0.082 4.082 22 C -0.202 4.202 23 C -0.068 4.068 24 N -0.198 5.198 25 C -0.042 4.042 26 C -0.077 4.077 27 C -0.241 4.241 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.230 0.770 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.581 -3.691 0.966 6.760 hybrid contribution -0.668 -0.116 -1.198 1.376 sum 4.913 -3.807 -0.232 6.220 Atomic orbital electron populations 1.23048 0.78480 1.03400 1.01933 1.85956 1.21408 1.27601 1.88516 1.19397 0.92416 0.84084 0.94560 1.20149 0.91104 0.98138 1.10585 1.20937 0.99764 0.90374 0.93770 1.19828 0.94255 0.93153 1.10833 1.18227 0.85037 0.84267 0.77109 1.90637 1.18758 1.86294 1.49792 1.48055 1.17545 1.05800 1.59945 1.20353 0.75986 1.00098 0.94688 1.21406 0.90885 1.45154 1.01262 0.91389 1.25012 0.98453 0.94392 0.95643 1.69928 1.16272 1.44173 1.20884 0.86556 0.79892 0.79784 0.81460 1.19781 1.20934 1.19767 1.20143 0.96341 0.86489 0.93209 1.21431 0.95164 0.99539 0.98677 1.21678 0.94058 0.94685 0.97796 1.22102 1.01361 1.02072 0.94661 1.22693 0.90792 0.94937 0.98395 1.67705 1.08958 1.17868 1.25309 1.22818 0.99718 0.94135 0.87554 1.23750 0.94777 1.01809 0.87325 1.21322 1.00229 0.92058 1.10495 0.92507 0.88633 0.92325 0.85515 0.85127 0.91496 0.94769 0.91959 0.88738 0.89770 0.84402 0.85290 0.83334 0.82461 0.76974 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.87 10.48 -18.82 -0.20 -5.06 16 3 C 0.14 2.39 6.70 -39.02 -0.26 2.13 16 4 C -0.18 -2.97 9.97 -39.49 -0.39 -3.37 16 5 C -0.03 -0.52 9.58 -39.22 -0.38 -0.90 16 6 C -0.18 -3.57 5.61 -104.96 -0.59 -4.16 16 7 C 0.56 11.82 7.51 -12.44 -0.09 11.72 16 8 O -0.57 -12.44 15.73 5.29 0.08 -12.35 16 9 N -0.58 -11.86 2.46 -177.64 -0.44 -12.30 16 10 C 0.21 4.62 4.63 -5.19 -0.02 4.59 16 11 C -0.55 -12.87 7.28 -34.44 -0.25 -13.12 16 12 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 14 N -0.88 -21.84 13.29 55.43 0.74 -21.11 16 15 Si 0.90 18.83 29.54 -169.99 -5.02 13.81 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 C 0.16 2.87 5.52 -5.20 -0.03 2.84 16 20 C -0.14 -2.42 5.48 -104.48 -0.57 -3.00 16 21 C -0.06 -0.87 9.86 -39.28 -0.39 -1.25 16 22 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 23 C 0.09 1.25 11.18 -17.54 -0.20 1.05 16 24 N -0.49 -8.15 10.36 -13.25 -0.14 -8.29 16 25 C 0.11 1.94 10.86 -17.55 -0.19 1.75 16 26 C -0.06 -1.22 7.51 -39.22 -0.29 -1.52 16 27 C -0.22 -4.06 9.01 -39.49 -0.36 -4.42 16 28 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.67 7.65 -51.93 -0.40 0.28 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.13 2.15 7.82 -52.49 -0.41 1.74 16 33 H 0.07 1.57 4.19 -51.96 -0.22 1.35 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 36 H 0.09 1.61 7.99 -51.93 -0.41 1.19 16 37 H 0.08 1.46 7.39 -51.93 -0.38 1.08 16 38 H 0.14 2.15 7.61 -52.49 -0.40 1.75 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.16 2.59 8.06 -52.48 -0.42 2.17 16 42 H 0.21 4.77 2.57 -52.49 -0.14 4.64 16 43 H 0.13 2.17 6.28 -52.49 -0.33 1.84 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -27.64 362.91 -8.19 -35.83 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.17 Total: 11.61 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.52 Total: -7.60 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.16 Total: -41.70 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.11 Total: -17.42 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.64 -8.19 -35.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.811 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds