Wall clock time and date at job start Tue Mar 31 2020 14:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 117.00296 * 2 1 4 4 C 1.38998 * 119.91347 * 179.97438 * 3 2 1 5 5 C 1.37712 * 120.08740 * 180.02562 * 4 3 2 6 6 C 1.39733 * 119.90758 * 359.97438 * 5 4 3 7 7 C 1.47603 * 120.08311 * 180.02562 * 6 5 4 8 8 O 1.21592 * 119.99775 * 23.64331 * 7 6 5 9 9 N 1.34779 * 120.00381 * 203.63688 * 7 6 5 10 10 C 1.46498 * 119.99401 * 1.48009 * 9 7 6 11 11 C 1.50705 * 109.47005 * 259.03210 * 10 9 7 12 12 H 1.08002 * 120.00139 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99938 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00199 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47216 * 59.99364 * 15 13 11 17 17 H 1.48495 * 109.47212 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46862 * 299.99651 * 15 13 11 19 19 C 1.46490 * 120.00382 * 181.47652 * 9 7 6 20 20 C 1.50704 * 109.47215 * 270.00460 * 19 9 7 21 21 C 1.38671 * 120.41985 * 90.00035 * 20 19 9 22 22 C 1.38624 * 118.42092 * 179.97438 * 21 20 19 23 23 C 1.38234 * 119.16270 * 0.25271 * 22 21 20 24 24 N 1.31863 * 120.75692 * 359.49700 * 23 22 21 25 25 C 1.31883 * 121.72621 * 0.49112 * 24 23 22 26 26 C 1.39729 * 119.83000 * 0.27820 * 6 5 4 27 27 C 1.37704 * 119.90714 * 359.46353 * 26 6 5 28 28 H 1.08997 * 109.47285 * 60.00045 * 1 2 3 29 29 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47228 * 299.99925 * 1 2 3 31 31 H 1.07993 * 119.95864 * 0.02776 * 4 3 2 32 32 H 1.07996 * 120.04395 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47557 * 19.03006 * 10 9 7 34 34 H 1.09001 * 109.47274 * 139.03444 * 10 9 7 35 35 H 0.96997 * 120.00222 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47240 * 150.00085 * 19 9 7 37 37 H 1.09003 * 109.47065 * 30.00132 * 19 9 7 38 38 H 1.08000 * 120.78616 * 359.95517 * 21 20 19 39 39 H 1.07997 * 120.42311 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.62059 * 179.74478 * 23 22 21 41 41 H 1.08005 * 119.61294 * 179.74756 * 25 24 23 42 42 H 1.08001 * 120.04697 * 179.72667 * 26 6 5 43 43 H 1.08000 * 119.95448 * 180.25088 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4333 1.2797 0.0005 5 6 4.0622 2.5048 0.0011 6 6 3.3029 3.6778 0.0005 7 6 3.9731 4.9929 0.0005 8 8 5.1087 5.0965 -0.4213 9 7 3.3262 6.0790 0.4680 10 6 1.9699 5.9483 1.0061 11 6 0.9729 6.4023 -0.0289 12 1 1.3154 6.7526 -0.9915 13 6 -0.3763 6.3703 0.2529 14 7 -0.7934 5.9433 1.4248 15 14 -1.6121 6.9323 -1.0303 16 1 -1.4796 6.0911 -2.2469 17 1 -2.9869 6.8000 -0.4848 18 1 -1.3521 8.3520 -1.3794 19 6 3.9793 7.3899 0.4381 20 6 4.7395 7.6018 1.7220 21 6 6.0643 7.2057 1.8270 22 6 6.7242 7.4210 3.0270 23 6 6.0429 8.0142 4.0733 24 7 4.7842 8.3825 3.9359 25 6 4.1255 8.1937 2.8091 26 6 1.9077 3.6026 0.0053 27 6 1.2863 2.3737 -0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0194 0.3726 0.0005 32 1 5.1409 2.5588 0.0019 33 1 1.7791 4.9061 1.2617 34 1 1.8724 6.5652 1.8995 35 1 -1.7427 5.9204 1.6229 36 1 3.2250 8.1692 0.3297 37 1 4.6697 7.4328 -0.4042 38 1 6.5699 6.7404 0.9938 39 1 7.7561 7.1249 3.1445 40 1 6.5486 8.1817 5.0128 41 1 3.0939 8.5050 2.7354 42 1 1.3174 4.5070 0.0094 43 1 0.2079 2.3147 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060625018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:47 Heat of formation + Delta-G solvation = 2.930489 kcal Electronic energy + Delta-G solvation = -27547.990179 eV Core-core repulsion = 23752.168440 eV Total energy + Delta-G solvation = -3795.821739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72087 -41.04126 -40.27832 -37.97760 -37.13776 -34.96254 -33.68538 -32.75920 -31.92903 -31.17360 -29.52161 -28.44438 -27.27906 -25.17475 -24.46781 -23.86768 -23.55357 -22.65739 -20.55588 -19.03892 -18.71048 -18.27493 -17.89542 -17.59353 -17.10284 -16.72485 -16.61670 -16.40861 -16.37917 -15.64053 -15.53363 -15.11943 -14.82803 -14.60953 -14.37081 -14.29841 -14.22383 -13.92704 -13.67385 -13.44919 -13.17177 -12.97997 -12.77139 -12.74936 -12.58224 -12.41892 -12.14058 -11.94397 -11.75456 -11.26621 -10.92814 -10.71719 -10.57679 -10.45901 -9.98763 -9.87048 -9.55701 -9.15034 -8.24267 -6.40521 0.02400 0.12469 0.33605 0.44495 1.43674 1.46045 1.52411 1.89973 2.25365 2.31173 2.42037 2.90210 2.95365 3.04392 3.54468 3.70593 3.89055 3.93837 3.94844 3.97957 4.10541 4.11585 4.31474 4.37449 4.43468 4.47863 4.58861 4.65600 4.67996 4.72432 4.75296 4.85579 4.87096 5.14382 5.18349 5.21034 5.23342 5.38892 5.49804 5.56020 5.63483 5.74276 5.78234 5.78963 5.96910 6.37650 6.51414 6.76191 7.01091 7.23334 7.34511 8.79115 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.005071 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.031773 B = 5520.754236 C = 7653.337520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.148 3.852 4 C -0.174 4.174 5 C -0.028 4.028 6 C -0.202 4.202 7 C 0.557 3.443 8 O -0.585 6.585 9 N -0.586 5.586 10 C 0.225 3.775 11 C -0.550 4.550 12 H 0.060 0.940 13 C 0.036 3.964 14 N -0.903 5.903 15 Si 0.950 3.050 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.272 1.272 19 C 0.163 3.837 20 C -0.156 4.156 21 C -0.065 4.065 22 C -0.169 4.169 23 C 0.089 3.911 24 N -0.511 5.511 25 C 0.100 3.900 26 C -0.078 4.078 27 C -0.229 4.229 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.057 0.943 31 H 0.158 0.842 32 H 0.143 0.857 33 H 0.059 0.941 34 H 0.014 0.986 35 H 0.272 0.728 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.187 0.813 41 H 0.149 0.851 42 H 0.192 0.808 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -5.353 0.460 8.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.101 3.899 4 C -0.192 4.192 5 C -0.047 4.047 6 C -0.205 4.205 7 C 0.349 3.651 8 O -0.469 6.469 9 N -0.314 5.314 10 C 0.105 3.895 11 C -0.588 4.588 12 H 0.078 0.922 13 C -0.167 4.167 14 N -0.540 5.540 15 Si 0.775 3.225 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.197 1.197 19 C 0.039 3.961 20 C -0.159 4.159 21 C -0.091 4.091 22 C -0.189 4.189 23 C -0.068 4.068 24 N -0.220 5.220 25 C -0.056 4.056 26 C -0.096 4.096 27 C -0.248 4.248 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.154 0.846 39 H 0.185 0.815 40 H 0.203 0.797 41 H 0.166 0.834 42 H 0.208 0.792 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.501 -5.104 1.075 8.335 hybrid contribution -0.914 0.232 -1.195 1.523 sum 5.587 -4.872 -0.120 7.414 Atomic orbital electron populations 1.23370 0.76522 1.05778 1.02066 1.85968 1.23367 1.26298 1.87927 1.19476 0.92797 0.84314 0.93275 1.20477 0.91190 0.98701 1.08832 1.21105 1.00316 0.90088 0.93179 1.19908 0.94368 0.93528 1.12661 1.18471 0.85012 0.84767 0.76893 1.90606 1.19150 1.86583 1.50549 1.48049 1.16962 1.06740 1.59649 1.20024 0.76851 0.98971 0.93659 1.21472 0.91436 1.44874 1.01030 0.92189 1.25579 0.99725 0.94391 0.97014 1.70009 1.16538 1.45238 1.22243 0.85720 0.78074 0.79224 0.79475 1.19569 1.20572 1.19709 1.20189 0.96328 0.85351 0.94187 1.21276 0.95869 1.00733 0.98015 1.21787 0.93625 0.94867 0.98871 1.22473 1.02836 1.00338 0.93215 1.23353 0.89895 0.93604 0.99972 1.67713 1.10463 1.18735 1.25069 1.22715 0.99686 0.95092 0.88110 1.23479 0.94968 1.01912 0.89198 1.21389 1.00815 0.91956 1.10657 0.92141 0.85196 0.92448 0.82424 0.83880 0.92393 0.96816 0.91899 0.88901 0.89626 0.84597 0.81545 0.79654 0.83410 0.79180 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.32 -8.96 10.48 -90.25 -0.95 -9.90 16 3 C 0.15 4.78 6.70 22.63 0.15 4.93 16 4 C -0.17 -5.32 9.97 22.33 0.22 -5.10 16 5 C -0.03 -0.97 9.58 22.51 0.22 -0.75 16 6 C -0.20 -8.20 5.61 -20.08 -0.11 -8.31 16 7 C 0.56 23.92 7.51 86.71 0.65 24.58 16 8 O -0.59 -25.67 15.73 -4.00 -0.06 -25.73 16 9 N -0.59 -24.71 2.46 -834.20 -2.05 -26.76 16 10 C 0.23 10.47 4.63 85.63 0.40 10.87 16 11 C -0.55 -26.70 7.28 25.60 0.19 -26.51 16 12 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 13 C 0.04 1.76 5.30 84.65 0.45 2.21 16 14 N -0.90 -46.09 13.29 21.45 0.28 -45.81 16 15 Si 0.95 39.00 29.54 68.60 2.03 41.03 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 C 0.16 6.00 5.52 85.64 0.47 6.47 16 20 C -0.16 -5.33 5.48 -19.77 -0.11 -5.44 16 21 C -0.06 -1.98 9.86 22.47 0.22 -1.76 16 22 C -0.17 -4.16 10.11 22.36 0.23 -3.94 16 23 C 0.09 2.30 11.18 84.69 0.95 3.25 16 24 N -0.51 -16.80 10.36 -195.83 -2.03 -18.83 16 25 C 0.10 3.50 10.86 84.67 0.92 4.42 16 26 C -0.08 -3.27 7.51 22.50 0.17 -3.11 16 27 C -0.23 -8.34 9.01 22.33 0.20 -8.13 16 28 H 0.06 1.23 7.65 -2.39 -0.02 1.21 16 29 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.22 7.65 -2.39 -0.02 1.20 16 31 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.14 4.51 7.82 -2.91 -0.02 4.48 16 33 H 0.06 2.86 4.19 -2.42 -0.01 2.85 16 34 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 36 H 0.09 3.36 7.99 -2.39 -0.02 3.34 16 37 H 0.09 3.08 7.39 -2.39 -0.02 3.06 16 38 H 0.14 4.18 7.61 -2.91 -0.02 4.16 16 39 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.19 3.32 8.06 -2.91 -0.02 3.29 16 41 H 0.15 5.24 8.06 -2.91 -0.02 5.21 16 42 H 0.19 8.88 2.57 -2.91 -0.01 8.87 16 43 H 0.14 4.58 6.28 -2.91 -0.02 4.57 16 Total: -1.00 -60.02 362.91 4.58 -55.43 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 1.04 Total: 35.44 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 6.32 Total: -4.88 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -3.80 Total: -91.40 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.01 Total: -35.63 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -60.02 4.58 -55.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.365 kcal (2) G-P(sol) polarization free energy of solvation -60.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds